LOCUS       NM_001164726            1261 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus Fc receptor-like 6 (Fcrl6), mRNA.
ACCESSION   NM_001164726
VERSION     NM_001164726.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Kulemzin,S.V., Zamoshnikova,A.Y., Yurchenko,M.Y., Vitak,N.Y.,
            Najakshin,A.M., Fayngerts,S.A., Chikaev,N.A., Reshetnikova,E.S.,
            Kashirina,N.M., Peclo,M.M., Rutkevich,P.N., Shevelev,A.Y.,
            Yanushevskaya,E.V., Baranov,K.O., Mamonkin,M., Vlasik,T.N.,
            Sidorenko,S.P., Taranin,A.V. and Mechetina,L.V.
  TITLE     FCRL6 receptor: expression and associated proteins
  JOURNAL   Immunol Lett 134 (2), 174-182 (2011)
   PUBMED   20933011
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Schreeder,D.M., Cannon,J.P., Wu,J., Li,R., Shakhmatov,M.A. and
            Davis,R.S.
  TITLE     Cutting edge: FcR-like 6 is an MHC class II receptor
  JOURNAL   J Immunol 185 (1), 23-27 (2010)
   PUBMED   20519654
REFERENCE   3  (bases 1 to 1261)
  AUTHORS   Schreeder,D.M., Pan,J., Li,F.J., Vivier,E. and Davis,R.S.
  TITLE     FCRL6 distinguishes mature cytotoxic lymphocytes and is upregulated
            in patients with B-cell chronic lymphocytic leukemia
  JOURNAL   Eur J Immunol 38 (11), 3159-3166 (2008)
   PUBMED   18991291
REFERENCE   4  (bases 1 to 1261)
  AUTHORS   Wilson,T.J., Presti,R.M., Tassi,I., Overton,E.T., Cella,M. and
            Colonna,M.
  TITLE     FcRL6, a new ITIM-bearing receptor on cytolytic cells, is broadly
            expressed by lymphocytes following HIV-1 infection
  JOURNAL   Blood 109 (9), 3786-3793 (2007)
   PUBMED   17213291
REFERENCE   5  (bases 1 to 1261)
  AUTHORS   Seaman,W.E., Niemi,E.C., Stark,M.R., Goldfien,R.D., Pollock,A.S.
            and Imboden,J.B.
  TITLE     Molecular cloning of gp42, a cell-surface molecule that is
            selectively induced on rat natural killer cells by interleukin 2:
            glycolipid membrane anchoring and capacity for transmembrane
            signaling
  JOURNAL   J Exp Med 173 (1), 251-260 (1991)
   PUBMED   1845873
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000013.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ228799.1, FQ230096.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-96                JAXUCZ010000013.1  87604562-87604657   c
            97-117              JAXUCZ010000013.1  87601410-87601430   c
            118-393             JAXUCZ010000013.1  87600533-87600808   c
            394-675             JAXUCZ010000013.1  87600101-87600382   c
            676-803             JAXUCZ010000013.1  87599645-87599772   c
            804-1261            JAXUCZ010000013.1  87595058-87595515   c
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /map="13q24"
     gene            1..1261
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /note="Fc receptor-like 6"
                     /db_xref="GeneID:305103"
                     /db_xref="RGD:1563939"
     exon            1..96
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /inference="alignment:Splign:2.1.0"
     CDS             66..767
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /note="cell surface glycoprotein gp42"
                     /codon_start=1
                     /product="cell surface glycoprotein gp42 precursor"
                     /protein_id="NP_001158198.1"
                     /db_xref="GeneID:305103"
                     /db_xref="RGD:1563939"
                     /translation="MLLWMVLLLCVSMTEAQELFQDPVLSRLNSSETSDLLLKCTTKV
                     DPNKPASELFYSFYKDNHIIQNRSHNPLFFISEANEENSGLYQCVVDAKDGTIQKKSD
                     YLDIDLCTSVSQPVLTLQHEATNLAEGDKVKFLCETQLGSLPILYSFYMDGEILGEPL
                     APSGRAASLLISVKAEWSGKNYSCQAENKVSRDISEPKKFPLVVSGTASMKSTTMVIW
                     LPVSCLVGWPWLLRF"
     exon            97..117
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /inference="alignment:Splign:2.1.0"
     exon            118..393
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /inference="alignment:Splign:2.1.0"
     exon            394..675
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /inference="alignment:Splign:2.1.0"
     exon            676..803
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /inference="alignment:Splign:2.1.0"
     exon            804..1261
                     /gene="Fcrl6"
                     /gene_synonym="Gp42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggtttttctc tccccagctt catctctgcc tactgtctga cctgctctgc ttcaagaaag
       61 gcaccatgct gctctggatg gttctactgc tctgtgtttc catgactgaa gcccaagagt
      121 tgttccagga tcctgtgctg agtcgtctca actcttcaga gacatcagat ctgctcctga
      181 agtgtacaac caaggtggac cccaacaagc cagcttctga gctcttttac tctttctaca
      241 aggacaacca catcattcag aacaggagtc acaacccact atttttcatc tcagaagcca
      301 atgaggaaaa ctctgggctt taccagtgtg tggtggacgc taaggatggc acaattcaga
      361 aaaagagtga ctatctggat atcgacctct gcacttctgt atcccaacct gtgctgactc
      421 tgcaacacga agccactaac cttgctgaag gagacaaagt gaagtttctt tgtgagaccc
      481 agctgggctc ccttcctatc ctttactcat tctacatgga tggagagatc ctaggggaac
      541 ctctggctcc ctctggcaga gctgcctccc tcctcatctc agtgaaggca gagtggagtg
      601 gcaagaacta ctcctgtcaa gctgaaaaca aagtctccag agatataagt gagcccaaga
      661 agttcccctt ggttgtctca ggtactgcct cgatgaagag caccacgatg gttatctggc
      721 tacctgtaag ctgcttggtg ggatggccat ggctgctgcg gttctgattt agttcttcaa
      781 gccctgcaaa aaaaaaaaac atggtatgaa aataagaggc tgcttatcac agcaggtgat
      841 tgtgatttgc cgtctgcact agcaaggaca tgattcttgc caattgtaga taatctaatt
      901 taggggactc tggagagggt atgaatgaca gagcctagag agggattagg ggcgctatga
      961 agaaggatgc tgctgctgct gctggtcttc ttgctcctgg tggctgttgt taaggattgt
     1021 catgtggtcg tgttcaagag aagaagtcgg agacatgact atgaagattg gacttgcttc
     1081 aaggaaccca atgccccaaa tcagcagaaa gtagtataaa aaaggtctat gccccccttt
     1141 cccctctagc cttctttctc tcctaactag tgtttgtgag ttggaattgg ggtggaaaag
     1201 ggtttggagg ggaggcggag ttataagaac ctaataaagt agctttcaaa atatctcaaa
     1261 a
//
