LOCUS       NM_001395712            3250 bp    mRNA    linear   ROD 26-APR-2024
DEFINITION  Rattus norvegicus FCH and mu domain containing endocytic adaptor 1
            (Fcho1), mRNA.
ACCESSION   NM_001395712
VERSION     NM_001395712.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3250)
  AUTHORS   Catsburg,L.A., Westra,M., van Schaik,A.M. and MacGillavry,H.D.
  TITLE     Dynamics and nanoscale organization of the postsynaptic endocytic
            zone at excitatory synapses
  JOURNAL   Elife 11, e74387 (2022)
   PUBMED   35072626
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3250)
  AUTHORS   Umasankar,P.K., Sanker,S., Thieman,J.R., Chakraborty,S.,
            Wendland,B., Tsang,M. and Traub,L.M.
  TITLE     Distinct and separable activities of the endocytic clathrin-coat
            components Fcho1/2 and AP-2 in developmental patterning
  JOURNAL   Nat Cell Biol 14 (5), 488-501 (2012)
   PUBMED   22484487
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 3250)
  AUTHORS   Henne,W.M., Boucrot,E., Meinecke,M., Evergren,E., Vallis,Y.,
            Mittal,R. and McMahon,H.T.
  TITLE     FCHo proteins are nucleators of clathrin-mediated endocytosis
  JOURNAL   Science 328 (5983), 1281-1284 (2010)
   PUBMED   20448150
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000016.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760389
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-35                JAXUCZ010000016.1  18464664-18464698   c
            36-100              JAXUCZ010000016.1  18460773-18460837   c
            101-153             JAXUCZ010000016.1  18460227-18460279   c
            154-245             JAXUCZ010000016.1  18457349-18457440   c
            246-320             JAXUCZ010000016.1  18456427-18456501   c
            321-462             JAXUCZ010000016.1  18456133-18456274   c
            463-615             JAXUCZ010000016.1  18455801-18455953   c
            616-720             JAXUCZ010000016.1  18455556-18455660   c
            721-819             JAXUCZ010000016.1  18454851-18454949   c
            820-916             JAXUCZ010000016.1  18454643-18454739   c
            917-965             JAXUCZ010000016.1  18454045-18454093   c
            966-1058            JAXUCZ010000016.1  18453866-18453958   c
            1059-1083           JAXUCZ010000016.1  18453451-18453475   c
            1084-1141           JAXUCZ010000016.1  18453166-18453223   c
            1142-1320           JAXUCZ010000016.1  18452523-18452701   c
            1321-1345           JAXUCZ010000016.1  18452404-18452428   c
            1346-1394           JAXUCZ010000016.1  18451976-18452024   c
            1395-1489           JAXUCZ010000016.1  18451521-18451615   c
            1490-1738           JAXUCZ010000016.1  18451095-18451343   c
            1739-1845           JAXUCZ010000016.1  18450412-18450518   c
            1846-1933           JAXUCZ010000016.1  18450223-18450310   c
            1934-2042           JAXUCZ010000016.1  18450014-18450122   c
            2043-2198           JAXUCZ010000016.1  18449396-18449551   c
            2199-2331           JAXUCZ010000016.1  18449062-18449194   c
            2332-2531           JAXUCZ010000016.1  18448659-18448858   c
            2532-2587           JAXUCZ010000016.1  18448417-18448472   c
            2588-2749           JAXUCZ010000016.1  18448016-18448177   c
            2750-3250           JAXUCZ010000016.1  18447424-18447924   c
FEATURES             Location/Qualifiers
     source          1..3250
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="16"
                     /map="16p14"
     gene            1..3250
                     /gene="Fcho1"
                     /note="FCH and mu domain containing endocytic adaptor 1"
                     /db_xref="GeneID:290639"
                     /db_xref="RGD:1307683"
     exon            1..35
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            36..100
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            101..153
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     CDS             127..2772
                     /gene="Fcho1"
                     /note="FCH domain only protein 1; FCH domain only 1"
                     /codon_start=1
                     /product="F-BAR domain only protein 1"
                     /protein_id="NP_001382641.1"
                     /db_xref="GeneID:290639"
                     /db_xref="RGD:1307683"
                     /translation="MSYFGEHFWGDKNHGFEVLYHCVKQGPVATKELADFIRERASIE
                     ETYSKAMAKLSKLASNGTPMGTFAPLWEVFRVSSDKLALCHLELTRKLHDLLKDVLRY
                     GEEQLKTHKKCKEEVQGTVDAVQMLAGVGQLLPKSRENYLSRCMDLERLRRENTSQKE
                     MDKAETKSKKAADSLRRSVDKYNSARADFEIKMLDSALRFQAMEEAHLQHMKTLLGSY
                     AHSVEDTHVQIGQVHEEFKQNVENVTVDMLLRKFAESKGTGREKPGPLDFDAYSSAAL
                     QEGNYPLLSTAMKRLRGAKAFRLPGLSRREPRASVDFPESGSGVPPEVDEEGFTVRPD
                     TSQNSEAEPPRFSSSDSDFDDEEPRKFYVRIKPAPARTMACSSEAAAAQLRATAGSLI
                     LPPGPGGTMKRLSSRDTSGKPQRPRSAPRSSCTEKPLASEEPLSKSLFGPPLESAFDH
                     EDFTGSSSLGFTSSPSPFSSSSPENVEDSGLDSPSLAAPGPSPESWVPRPGTPQSPPT
                     CRAQHQEARDPVPRVPSPGPWGPEAGAGADSLTLADPTREGLAATLRRPRSRKVSCPL
                     TRSSGDLCRSLSPSPLGSSAPTIPPDRPSFSAQMGHGVSRGPSPVVLGSQDTLPVATA
                     FTEYVYAFFRGHNPSCLARVTGELTMTFPAGIVRVFSGTPPPPVLSFRLVHTSPIEHL
                     QPNADLIFSDPSQSDPETKDFWLNMAALTEALQHQAEQNPTASYYNLVLLRYQFSRPG
                     PKSMPLQMSAHWQCGPTLTRVSVEYSYRAGATAVSTPLTNVQILLPVGEPVTSVRLQP
                     AATWNTEEKRFTWKLPDVREAGGSGHLSASWQPQSGPSTPSPVTAQFTSEGATLSGLD
                     LELLGGGYRMSLVKRRFTGMYLTSC"
     exon            154..245
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            246..320
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            321..462
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            463..615
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            616..720
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            721..819
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            820..916
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            917..965
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            966..1058
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1059..1083
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1084..1141
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1142..1320
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1321..1345
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1346..1394
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1395..1489
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1490..1738
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1739..1845
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1846..1933
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            1934..2042
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            2043..2198
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            2199..2331
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            2332..2531
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            2532..2587
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            2588..2749
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
     exon            2750..3250
                     /gene="Fcho1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtctggagc gcgcaggtgg cggccgcgag aggcgatgga gaaactgagg cacagagctg
       61 cgtgacttgg agccaggaga agagtggctt ctgagtggtg acagactcag gacagaggct
      121 accaggatgt cctattttgg ggaacatttt tggggcgaca aaaaccatgg ctttgaggtc
      181 ctctaccatt gtgtgaagca gggacccgtg gccaccaagg agctggctga cttcattagg
      241 gaaagggcca gcatcgagga gacatactcg aaggccatgg ccaaactgtc caagctagcc
      301 agcaacggga cccccatggg gaccttcgcc ccgctctggg aggtcttccg tgtgtcctcg
      361 gacaaactgg cactgtgcca cctggagctg actaggaagc tccacgatct cctcaaggat
      421 gtgctgcgct atggcgagga acagctcaag acccacaaga agtgcaagga ggaagttcag
      481 ggcactgtgg atgcggtaca gatgttggca ggtgttgggc agctcctgcc aaagtctcgc
      541 gagaattacc tgagccgctg catggacctg gagaggttgc gtagagagaa caccagccag
      601 aaggagatgg acaaggcaga aaccaaaagc aagaaggcag ccgacagcct gcggcgctct
      661 gtggataagt acaactcagc ccgagcagac tttgagatca agatgcttga ttcagccctg
      721 cggtttcagg ccatggagga ggcgcacctg cagcacatga agaccttgct gggctcctat
      781 gctcactctg tggaggacac ccacgtgcag atcgggcagg tgcatgagga atttaagcag
      841 aatgtggaaa atgtgacggt ggacatgctc ctcaggaaat ttgcagagag caagggcacc
      901 gggcgcgaga agcctgggcc tctggacttt gatgcataca gctcagctgc cctgcaggaa
      961 ggcaactacc cacttctgtc aacagcaatg aaacgtctcc gtggagccaa ggctttccgc
     1021 cttccgggac tgagccgtcg ggagccacgt gcatctgttg acttcccaga gtctggctca
     1081 ggggtgcctc cagaggttga tgaggaaggc ttcactgtgc gccccgatac atctcagaac
     1141 agtgaggccg agcccccacg cttctcctct agtgactctg attttgatga tgaggagcct
     1201 agaaagttct atgttcgcat caagcctgcc cccgcccgca ccatggcctg cagctctgaa
     1261 gctgcagccg cccagctcag ggccacagct ggcagcctca tcctcccgcc aggcccaggg
     1321 ggcaccatga aacgtctctc atcgcgggac acttctggga agccacagag acctcggtcg
     1381 gccccacgca gcagctgcac agagaagccg ctggcctcgg aggagccact gtccaagagc
     1441 ctctttgggc cgccgctgga gtctgccttc gaccacgagg acttcacagg ctccagcagc
     1501 ctgggcttca catccagccc atctcctttc tcatcctcat ctccggagaa tgtggaagac
     1561 tcgggcctgg actctccatc tcttgctgca cccggtccat cgcctgagtc ctgggtcccc
     1621 cgaccaggca ccccgcagag cccacccacc tgcagggcac agcaccagga ggccagggac
     1681 ccagtgcccc gtgtgccctc gccaggtccc tgggggcctg aggcaggtgc aggtgcagac
     1741 tcactgacgc tggctgaccc caccagggag ggcctggctg ccacgctgag gagaccacgg
     1801 tccaggaaag tgtcctgccc gctcaccagg agcagtggtg acctgtgccg gtcgctcagc
     1861 ccatccccac tgggatcctc tgcccccacc atcccccctg accggcccag cttctccgcc
     1921 cagatgggac acggtgtctc ccgtggcccc agcccagtgg tcctgggatc ccaggacacc
     1981 ttgcctgtgg ccacagcctt cactgagtat gtctatgcct ttttccgtgg ccacaacccc
     2041 agttgcctgg ctcgagtcac cggggagttg accatgacct tccctgcggg cattgtacgt
     2101 gtgttcagtg ggaccccacc accacctgtc ctcagcttcc ggctggtgca tacgtccccc
     2161 atagaacact tacagcccaa cgctgacctg atcttcagcg acccctccca gagtgacccg
     2221 gagaccaaag atttctggct gaacatggcg gcattgacgg aggccctgca gcaccaggca
     2281 gagcagaacc ccaccgcctc ctactacaac ctggtgctgt tgcggtacca gttctcccgc
     2341 cctggaccca agtcaatgcc cctgcaaatg agcgcccact ggcagtgcgg gcccacactc
     2401 acgcgggttt cggtggagta tagctaccgt gcgggtgcca ctgctgtgtc cacgccactc
     2461 actaacgtcc agatcctgct gcccgtgggg gagccggtca ccagtgtgcg gctgcagcct
     2521 gcggccacct ggaacacaga ggaaaagagg ttcacatgga agcttccaga tgtgcgtgag
     2581 gcagggggct cgggccacct gtccgccagc tggcagccgc agtcggggcc cagcacccct
     2641 agccccgtga ccgcgcaatt caccagtgag ggcgccacgc tatccggcct ggacctggag
     2701 ctgctgggtg gcggctaccg catgtccctg gtgaagcgga gattcacagg gatgtacctc
     2761 accagctgct gaggtgcccg gtgcacgggg accgcctgcc ctcccgccgc cgccgccggc
     2821 ttccagctgc cccagactgg actccatgga caggaacgcc cccaccccct accccgtttc
     2881 agtctggctc agccaactcc tcctgcctcc gtccgcaaac aggggccctg gccctttagt
     2941 attctttttt gttttttaag tattctttaa ataaacagtt ttctagcaaa ataaagagga
     3001 atcaatcctc tttctggttc agactgggaa ggatgggagg aggagaaagg gggtgcttat
     3061 acccacaatg catttcatcc ccagggctgt gtgagctgcc tattcctgct gacttacagc
     3121 tgagttagag ggagggagaa gtaggtaaac ccctagagtt ctccactccc ctaacgctgc
     3181 aaccctctaa tacagctagt tcttcatatt gtggtgaccc ccaaacataa aattatttca
     3241 tttctactta
//
