LOCUS       NM_001044235             714 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus Fcf1 rRNA-processing protein (Fcf1), mRNA.
ACCESSION   NM_001044235 XM_001056999 XM_216747
VERSION     NM_001044235.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Sloan,K.E., Bohnsack,M.T., Schneider,C. and Watkins,N.J.
  TITLE     The roles of SSU processome components and surveillance factors in
            the initial processing of human ribosomal RNA
  JOURNAL   RNA 20 (4), 540-550 (2014)
   PUBMED   24550520
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Wang M, Anikin L and Pestov DG.
  TITLE     Two orthogonal cleavages separate subunit RNAs in mouse ribosome
            biogenesis
  JOURNAL   Nucleic Acids Res 42 (17), 11180-11191 (2014)
   PUBMED   25190460
REFERENCE   3  (bases 1 to 714)
  AUTHORS   Castello A, Fischer B, Eichelbaum K, Horos R, Beckmann BM, Strein
            C, Davey NE, Humphreys DT, Preiss T, Steinmetz LM, Krijgsveld J and
            Hentze MW.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from AM258960.1.
            
            On Aug 31, 2012 this sequence version replaced NM_001044235.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: AB256045.1, AM258960.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-714               AM258960.1         4-717
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="W"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q31"
     gene            1..714
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /note="Fcf1 rRNA-processing protein"
                     /db_xref="GeneID:299198"
                     /db_xref="RGD:1310899"
     exon            1..25
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     CDS             23..619
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /note="FCF1 small subunit"
                     /codon_start=1
                     /product="rRNA-processing protein FCF1 homolog"
                     /protein_id="NP_001037700.1"
                     /db_xref="GeneID:299198"
                     /db_xref="RGD:1310899"
                     /translation="MGKQKKTRKYATMKRMLSLRDERLKEKDRLKPKKKEKKDPSALK
                     EREVPQHPSCLFFQYNTQLGPPYHILVDTNFINFSIKAKLDLVQSMMDCLYAKCIPCI
                     TDCVMAEIEKLGQKYRVALRIAKDPRFDRLPCTHKGTYADDCLVQRVTQHKCYIVATV
                     DRDLKRRIRKIPGVPIMYLSNHRYNIERMPDDYGAPRF"
     exon            26..93
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     exon            94..165
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     exon            166..314
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     exon            315..387
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     exon            388..475
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     exon            476..570
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
     exon            571..699
                     /gene="Fcf1"
                     /gene_synonym="RGD1310899"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaacaggag tgcgtcgaga acatggggaa gcaaaagaaa acaaggaaat atgcgactat
       61 gaagcgaatg cttagtctaa gagatgagcg acttaaagaa aaggataggt tgaagcctaa
      121 aaagaaagaa aagaaagatc ctagtgcgct gaaggaaaga gaagtccccc agcatccttc
      181 ctgcttgttc ttccagtata atacacagct gggtccacct taccacatcc tggtggatac
      241 caacttcatc aacttttcca ttaaagccaa actggactta gtgcagtcaa tgatggactg
      301 tctgtacgcc aagtgtatcc cttgtataac cgattgtgta atggctgaaa ttgagaaatt
      361 aggacagaag tatcgtgtgg cactaagaat cgccaaagat ccccgatttg accgattgcc
      421 atgcacacac aaaggaacct atgccgatga ctgcctggtg cagagggtaa ctcagcacaa
      481 gtgttacatt gtggccacag ttgaccgtga cctcaaacga agaatccgga agatccctgg
      541 tgtcccaatc atgtaccttt ctaaccacag atacaacatc gagcggatgc cagatgatta
      601 tggagcccct cgcttctaat tctcactcca cagaatctgc ctgctgttct tggaccagct
      661 ttctctcatc aattaattaa acactttctg atttttaaaa aaaaaaaaaa aaaa
//
