LOCUS       XM_039091289            3801 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus Fc alpha and mu receptor (Fcamr),
            mRNA.
ACCESSION   XM_039091289
VERSION     XM_039091289.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq; corrected model.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            frameshifts :: corrected 1 indel
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-184               JACYVU010000242.1  28635161-28635344
            185-304             JACYVU010000242.1  28637454-28637573
            305-305             "N"                1-1
            306-407             JACYVU010000242.1  28637574-28637675
            408-548             JACYVU010000242.1  28638904-28639044
            549-887             JACYVU010000242.1  28643736-28644074
            888-1641            JACYVU010000242.1  28645006-28645759
            1642-1760           JACYVU010000242.1  28646332-28646450
            1761-3801           JACYVU010000242.1  28647232-28649272
FEATURES             Location/Qualifiers
     source          1..3801
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3801
                     /gene="Fcamr"
                     /note="Fc alpha and mu receptor; The sequence of the model
                     RefSeq transcript was modified relative to its source
                     genomic sequence to represent the inferred CDS: inserted 1
                     base in 1 codon; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 4 Proteins, and 86%
                     coverage of the annotated genomic feature by RNAseq
                     alignments"
                     /db_xref="GeneID:681070"
                     /db_xref="RGD:1584674"
     CDS             146..1912
                     /gene="Fcamr"
                     /note="The sequence of the model RefSeq protein was
                     modified relative to its source genomic sequence to
                     represent the inferred CDS: inserted 1 base in 1 codon"
                     /codon_start=1
                     /product="LOW QUALITY PROTEIN: high affinity
                     immunoglobulin alpha and immunoglobulin mu Fc receptor"
                     /protein_id="XP_038947217.1"
                     /db_xref="GeneID:681070"
                     /db_xref="RGD:1584674"
                     /translation="MDQDAPAKPREQKRLTCQDRQFSGPAFHIGLPSCWSKLKSHSQS
                     AQPWAPCHSXLLTRLPLASCLWLQVTSLRTKWKILLLILCLLHGSSMTPPHRRPHSRW
                     LQSGSQQFRAHLYSVEAHTVATTLCCWKNSLSGANALRGPKLVSGETGGTVTIRCHYA
                     PTSVNRHQRKYWCRLGPPLWICYTVVSTNQYTHHDYRGRVALTDVPQSGLFMVRLLQL
                     SLGDTGLYRCGIGDRNDMLFFSVNLTVSAGPSNTTYAAAPASSEPITASPGTASSAAN
                     RWTSGVTQVLEGRGSEWDRSAPTPDTSKTTSSANGRQTLTTARTMVPRTSSREEGSVK
                     VAVSTPEGPAPKSGSLFSTTQGVWVWSTRNSVTTGATTSEGRKQGTTPETDGPREETN
                     VSTSPNAPRKTTGTTRPSVLISEHGTWETLQDETKVSKQQMLYSPEGSSPAPSAQTLN
                     ATCMEAAPGEGRTDGSLGNTTEESSPLTPSQLSAAGPMWVSGKGSSMKSTFTERESDS
                     RILTPVSIVLALLLIAALVLLKRRLGGERTSQKTERVPRITLIQMTHFLPDKLPGEGK
                     NLQQSDLPTQASLTVLEKDPGL"
ORIGIN      
        1 cagtctttca gctctagttc ccacagcctt caactcctca ccctgccttc tcagactcca
       61 gattgagaga aagccactgg aagactccca aacaccaaca cctctttgga aaaaaaaatc
      121 caagttgatc ttgctcagga ccatcatgga ccaagatgcc ccggctaagc ccagagaaca
      181 aaagcgcctc acttgccaag acagacagtt ctccggccct gcctttcaca tagggctacc
      241 cagctgctgg agcaaactga aatcgcacag ccagagcgcc cagccctggg ctccctgcca
      301 ctctnagctt ctcacaaggc tccctctggc ctcttgtctt tggttgcagg tcactagcct
      361 gagaacaaag tggaaaatac ttcttctcat actctgcctg ctccatggtt catccatgac
      421 ccctccacac aggaggcccc attccagatg gctgcagtct ggctctcaac agttcagggc
      481 ccatctctac tccgtggaag cacacacagt tgccacgacc ctttgctgct ggaaaaactc
      541 cctttcaggt gcaaacgcat tgagaggccc caagctggtg tctggggaga ctgggggaac
      601 tgtcaccatc cgttgccatt atgcccccac ctcagtcaac aggcatcaaa gaaaatactg
      661 gtgccgcctg gggcctccat tgtggatctg ctacaccgtc gtgtccacca accaatacac
      721 tcaccacgac taccgtgggc gtgtggctct caccgacgtt ccacagagtg gtttgttcat
      781 ggtgaggctg ctccagctgt ccctgggtga cacgggactt taccgctgtg gcattggaga
      841 ccgaaacgac atgctgttct tcagcgtgaa tctgactgtg tctgcaggcc cttccaacac
      901 aacctatgca gcagctccag cttctagtga gcccatcaca gcatctcctg ggacagcatc
      961 ctcagcagct aacagatgga cctcaggagt cacccaggtc ctagaaggcc gaggttcaga
     1021 atgggacaga tcagctccaa ccccagatac aagcaaaact acatcttccg ccaacggaag
     1081 acaaacctta acaacagcca gaacaatggt tccaaggaca agcagcagag aggagggttc
     1141 tgtcaaggtg gcggtctcca caccagaggg tccagctcca aaatcaggga gcctgttcag
     1201 tacaacacag ggtgtttggg tgtggagcac caggaactca gtaacaaccg gtgctaccac
     1261 gagtgagggt aggaagcaag gcacaacccc agagactgat gggcctcgag aggaaacaaa
     1321 tgtcagcacg tctccaaatg cacccaggaa gaccacagga accacgaggc cgtcggtcct
     1381 gatctcagag catgggacct gggaaactct ccaagatgaa acgaaggttt ctaagcaaca
     1441 aatgctgtac tccccggagg ggtcatcgcc agctccaagt gcacagacct tgaatgctac
     1501 atgtatggaa gcggcgcctg gggaaggaag aactgatggg agcctaggaa acactactga
     1561 agaaagcagc cccttgacac caagccagct ctcagcagca ggccctatgt gggtttcagg
     1621 caaagggtca tccatgaaga gtacttttac agaaagagaa agcgactctc ggatcctgac
     1681 tccagtctcc attgtgctgg ccctgcttct aattgctgct ctggtcctac tgaaaaggag
     1741 actcggggga gagaggacct ctcagaagac agaaagggtg ccaaggatca cgctaattca
     1801 gatgacacat ttcctaccgg ataagctccc tggtgagggt aagaacttgc agcagagtga
     1861 ccttcctacc caagccagcc tgaccgtcct ggagaaggac ccaggactct gaggatggga
     1921 aggtaaagag ctcggtcacc atggagggag gaccaagccc ggatagctcc atggcttctt
     1981 catccccttc ttgttttcct ccacctacat gaagctaact gagttcaatc tccacctgga
     2041 gacatgggag gctaccagcg tgggtctcag acaaccaggc attctccaaa gtggcgctgt
     2101 cactgctgcc tccgggcacc cttccttctc tctacccgtt aatactaagc ctgctgctca
     2161 cgttaacagc attctcctat accaggctcg cccaagcaag cacagccata gctccttaag
     2221 gactgtaatt atacttcatc tatttcacta catctctagt gggacttcag caaattaaac
     2281 tccatagctg tttggctagg gatggcatgg atttggtgga cactgaagat cctcctggca
     2341 ggaggtctaa acacccaagg gccttcattc gttttttggg gggattcact agacgattgt
     2401 gtcggagggt ggtttccgcg ggagacggga ggaacaagca tccactcttt gtatcatatc
     2461 tctgtatttg actgtgccct cattatgctg tgggtcttct gcccatgtcg agattttctg
     2521 ggatttccct aaataatgga agaagggggt acttttcatt atcaatctcc tcttgttcca
     2581 ctgtttatga atggttggta tcaaaggttg tggacaggct ggggacagtt tgggaaagac
     2641 agaaggacaa acgagaggaa ttttatgtgg attctgtctt acaaccacat ctgttattgg
     2701 ggaaccttta cccactgtta accccaccat cttttcagca atcacatttg ggattttctt
     2761 tgccagacat gccagcacgt gctctgtatt gggcagtatg atcattgagc aatagaagct
     2821 atgggggaag aaaggtccca acaccaattt aagaactgtc acatggacag gctcttgtct
     2881 tgtctcaaac tgtcagtggc atccgagtcc ttcagaaaca cctattcaca cctcatcatg
     2941 accccagata ctataccaag aaagtcaagt gaggcatcct cggggctgat aggaaacctg
     3001 tcatagatag atagatagat agatagatag atagatagat agatagatag atagatagat
     3061 agataatgca taaatgcaga ttggatgcat ctagccaggt ggaaacacag acctttatat
     3121 gcttaatcta gaacagtggt tctcaacccg tgggtcatga cccctttggg ggaggggacg
     3181 ggtcaaagga ccctttccca agggtcacat atcaaacatc ctgcatatca tatatttaca
     3241 ttatgatttt taaccatagc aaaattagag ctatgaagtg gcaacaaaaa taattttatg
     3301 gttgggggtt gccccaacat gaggaactgt gttaaagggt cataacatta gggtggttga
     3361 gagctactgt gcgacaggga acctgaggcc cagtagaagc agccacttgc tggaagtcac
     3421 tcgggcaata aaactagtga aatgagagag agacagagag ggacagagag agacagacag
     3481 agagacagag agacagagag agacagacag agagacagac agagactata agcacacatg
     3541 accttggcct agtgcctttc cacttcaacc acttcggtat aaacaaagca gagcttgtca
     3601 aaagtgtgtc agaccacaac cattgctcca gactatgttc tgcccacaat ctcagcctgc
     3661 ctgaggaacc agtgagagag atggaaaagc cactatagct ccattccatc catgaaccag
     3721 cagttcttga cagatatata atacatacat acatacatac atacatacat acatacatac
     3781 atacaaacaa acatacacac a
//
