LOCUS       XM_006233627            2563 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus F-box and WD repeat domain containing
            5 (Fbxw5), transcript variant X4, mRNA.
ACCESSION   XM_006233627
VERSION     XM_006233627.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051338.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_006233627.4.
            
            On Jan 21, 2021 this sequence version replaced XM_006233627.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2563
                     /gene="Fbxw5"
                     /note="F-box and WD repeat domain containing 5; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 48 ESTs, 6 long SRA reads, 5 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 151 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:362081"
                     /db_xref="RGD:1305661"
     CDS             370..2079
                     /gene="Fbxw5"
                     /codon_start=1
                     /product="F-box/WD repeat-containing protein 5 isoform X1"
                     /protein_id="XP_006233689.1"
                     /db_xref="GeneID:362081"
                     /db_xref="RGD:1305661"
                     /translation="MDEGGMPLLPDSLVYQIFLSLGPADVLAAGLVCRQWQAVSRDEF
                     LWREQFYRYYQVARDVPRHPAATSWYEEFRRLYDMVPCVEVQTLKEHTDQVLHLSFSH
                     SGYQFASCSKDCTVKIWNNDLTISLLHSADMRPYNWSYTQFSQFNQDDSLLLASGVFL
                     GPHNSSSGEIAVISLDSFALLSRVRNKPYDVFGCWLTETSLISGNLHRIGDVTSCSVL
                     WLNNAFQDVESENVNVVKRLFKIQNLNASTIRTVMVADCSRFDSPDLLLDAGDQAGLP
                     CRVFDLGGDTEEEATDPGLHTSGSGHVKEGLRRVFDSVLDGHGQLSDCALETKVAELL
                     AQGHTKPPECPDADSRNKYLIFTTGCLTYSPHQIGIKQILPHQMTTAGPVLGEGRGSD
                     AFFDALDHVIDVHGHIIGMGLSPDNRYLYVNSRAWPPGSVVADPMQPPPIAEEIDLLV
                     FDLKTMREVKRALRAHRAYTPNDECFFIFLDVSRDFVASGAEDRHGYIWDRHYNICLA
                     KLRHEDVVNSVAFSPQEQELLLTASDDATIKAWRSPRIVRVLQAPHPRPRPFFSWFAS
                     HRR"
ORIGIN      
        1 aagccgggcg cagcgcagcg ggcagaggca ccgcggtgag tcccggcttt ggccccgccg
       61 tgctcacctg tgtcatctgc cctgtcccca gtcaccggcc ttgtgcccca ttactcccag
      121 tcctgcggtc accagccttt tgccactttc ggtgtccctc gtccccggtc ctggccttcg
      181 tttattttct cgggcctggt cccggtcgtg ggcctcgccc tgccttgtcc tactttaact
      241 ggcctttgct accttcacgg gctttgttca ctgtcaccgt cttttctcct gcaatgtcta
      301 cacttgtaca gcctttggtg gctttatctg gccagtgata gccttggacc gtctgggcag
      361 aatgtcacga tggatgaggg gggcatgccc ctgctccccg acagcctggt ctaccagatc
      421 ttcctgagct tgggccctgc agatgtgctg gctgctgggc tggtgtgccg ccagtggcag
      481 gctgtctccc gggacgagtt cctatggagg gagcagttct accgctacta ccaggtggct
      541 cgcgatgtgc cccgccaccc agcggccaca tcctggtatg aggagttccg gcggctctat
      601 gacatggtgc cctgtgtgga ggtgcagaca ctgaaggagc acaccgacca ggtcctgcac
      661 ctcagcttct cccactcggg gtaccagttt gcctcctgct ccaaggactg cacagtgaag
      721 atctggaaca atgacctgac catctctctg ctgcacagtg cagatatgag gccatacaac
      781 tggagttaca cccagttctc ccagttcaac caggatgact cactgttgct ggcctcgggg
      841 gtgttcctag ggccacataa ctcctcctca ggcgagatag ctgtcatcag cttagactcc
      901 ttcgccctgc tgtcgcgtgt gcgaaacaag ccctatgatg tgtttggctg ctggctcaca
      961 gaaaccagcc tcatctcggg gaacctgcac cgcattggag atgtcacctc ctgctcagtg
     1021 ctgtggctca acaatgcctt ccaggatgtg gagtcagaga acgtcaacgt ggtaaagcgg
     1081 ctctttaaga tccagaacct caatgccagc accatccgca ccgtgatggt ggctgactgc
     1141 agccgctttg atagcccgga cctcctgctg gatgctggtg accaggctgg gctcccctgc
     1201 cgagtctttg acctaggtgg ggacactgaa gaagaggcca ctgacccagg tttgcacacc
     1261 tctggttctg gccatgtcaa ggaaggttta cggcgtgtgt ttgatagcgt cctggatgga
     1321 catggacagc tgtcagattg tgcactggag accaaggtgg ctgagctgct ggcccagggc
     1381 cacaccaagc ccccagagtg tcctgacgct gacagcagga acaagtacct catcttcacc
     1441 actggctgcc tcacgtactc acctcatcag atcggcatca agcagatcct gccgcaccag
     1501 atgacaactg cagggcccgt gctgggcgag ggccggggct ctgatgcctt ctttgatgcc
     1561 ctggaccatg tcattgatgt gcatgggcac atcattggca tgggcctgtc tcccgataac
     1621 aggtacctgt atgtgaatag ccgtgcctgg ccccctggct cagtggtcgc cgaccccatg
     1681 cagccaccac ccattgcaga ggagattgac ttgctggtgt ttgatctgaa gaccatgcgg
     1741 gaggtgaagc gagctctgcg agcacaccgt gcctacacac ccaatgatga gtgcttcttc
     1801 atctttctgg atgtcagcag ggattttgtg gccagtgggg ctgaagatcg gcatggctat
     1861 atctgggacc gccactacaa catctgccta gccaagctgc ggcatgagga tgtggtcaac
     1921 tcagtggcct ttagccccca ggagcaggag ctcttgttga cagccagcga tgatgccact
     1981 atcaaagcct ggcgctcacc acgcattgtt cgtgtcctgc aggctccaca cccacgccca
     2041 cgccccttct tctcctggtt tgccagccat aggcgctgaa ggcttcagtg atttgagcca
     2101 ttggaacctc ctggggaaaa tgtcccctgt ggttccttac tgccctggga cagagtagct
     2161 tatagcagta acgccttagg aggggcatcc tgaccccaac acacaacctg ctcactcagc
     2221 cgcaggctta gcactagggt aggccttgtt ggcagcacca gagaccccat gttagcctct
     2281 tggccgccgt ggggtacacg ggacactgga aaccctgttc acctaccctc ttcccttggg
     2341 ttggccagct cacatagccc caagctgacc tctgcctggt acctttcata ctcagccaaa
     2401 cccacaccct tggcgtcttg agtgtaccct gggtggcagg ccacaggcac cggtctctga
     2461 taattcgggt cttgctactg atggagtggc ctgcagtgga ccatgggtgc tgcatgctgc
     2521 actcatgaac tgtttgggcc tgaataaaca gttggcaaca gca
//
