LOCUS       XM_039087732            2021 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus F-box protein 47 (Fbxo47), transcript
            variant X1, mRNA.
ACCESSION   XM_039087732
VERSION     XM_039087732.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087732.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2021
                     /gene="Fbxo47"
                     /note="F-box protein 47; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     ESTs, 3 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 3 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:360615"
                     /db_xref="RGD:1559709"
     CDS             450..1805
                     /gene="Fbxo47"
                     /codon_start=1
                     /product="F-box only protein 47 isoform X1"
                     /protein_id="XP_038943660.1"
                     /db_xref="GeneID:360615"
                     /db_xref="RGD:1559709"
                     /translation="MASRVNTTFTLIPSSKCRRLNHQSSDFCNTLDSDPQLLSTLGNF
                     KVLPLEILHIILRYLSVKDIGMLSMVSKTVSQHIINYISTSSGSRRLLLQNFHDLDLP
                     GTKEETALLEHYRALGLLFKRCTLLLPTKERLKYIQKILSEVPCFKFSGCSAPLQCLG
                     LSCYGMFLQTLTAGWDELECHRVYNFLCEQTNLSRKMQTVVCNKPGSARKLELRVRLF
                     CRNVLLDHWTHRSDSAFWLTRILKPWPMVNQARLLYIIFGPTSPHDGQVIWQEMIEGP
                     TDESSLKGLANAIKLLYDTGAKGWTADDVISLVDELSVVPREWLLENNARLLILSGNN
                     ICFTFMASKAVNGRAIELARLIVFLALVCEKELYCMDWTVRMMQKVCKVFNTATERKS
                     FLQSVANAFACVTMEMLQPVMSGERDDDDRGFLNLFHLLHAQANFHKEVLYLTMNAVS
                     S"
ORIGIN      
        1 ggctcctccc gcagggattc ctgggagagc tctgagtaat cgtgagggga ggggcagaaa
       61 ggtcgaggct gcttgatatt catgaggagg cggagcctcc acccgctggg gctcctggga
      121 gaattctaaa atctacttga ggcgacgggg gcgcccgaga gctgaagaca cagcttcggg
      181 gcggagcgga ggtagcgaag cagtatcctc ccccattttc tggcgggaaa agcctgaggc
      241 gatttttatt tttaagtatt atgaaatctg aggagggtgg gacaagacga ctaaatccca
      301 ctttcctgtg atactgtagc cggaaaactg tcgaaacctg tgactataaa aaaaaatccc
      361 aacactcagg aggcaaaggc agttagatct ctgtgatctg atctacagtt ccagaacagc
      421 cagtggataa atttatggga taagagaaga tggcgtctag agtaaatacc actttcactc
      481 tgatacccag ctcaaaatgt agacgtttga atcatcaatc cagcgatttt tgcaacactc
      541 ttgattcaga tcctcagctc ttatctacac ttggaaattt taaagtctta ccattggaaa
      601 tattacacat aattttaaga tacttgtcag tgaaggatat tggcatgtta agtatggtgt
      661 ccaaaacagt cagccagcac ataattaatt acatctcaac ctcatctgga agtaggagac
      721 ttttactaca gaactttcat gaccttgatc tgcctggcac aaaagaagag actgctctat
      781 tggagcacta cagagctcta ggtctactat ttaaaagatg caccttgctg cttcccacca
      841 aggaaagact gaaatacatt cagaagatac tctcagaagt tccctgcttc aagttcagtg
      901 gctgctcagc tcctctgcag tgtttaggat tatcatgtta tggcatgttt ttacagactt
      961 taaccgcagg ctgggatgaa cttgaatgtc atcgtgtgta taacttctta tgtgagcaga
     1021 ctaatctctc ccgaaagatg cagactgttg tctgtaacaa accaggaagt gctcgaaaac
     1081 tggagttaag ggttagattg ttctgccgga atgtcctact tgatcactgg acgcatcgga
     1141 gtgattctgc attttggtta actcgaatat taaagccgtg gccaatggtg aatcaggcaa
     1201 gattgctata tattatcttt ggaccaacat ctcctcatga tgggcaggtg atttggcagg
     1261 aaatgataga agggcctaca gatgagtcca gtctgaaagg tttggctaat gccattaagt
     1321 tactgtatga cacaggtgcc aaaggctgga cagcagatga tgtcatcagt cttgtagatg
     1381 agctgtcagt ggttccccgg gagtggcttc tggagaacaa tgcacgcctc ctgatcctga
     1441 gcgggaacaa catctgcttc actttcatgg ctagtaaagc tgtaaacggg cgagccatcg
     1501 agctggcaag gctcatagtc tttttggctt tggtgtgtga gaaagagttg tactgcatgg
     1561 actggacagt tagaatgatg caaaaagtct gcaaagtctt caacactgca acagagagaa
     1621 agagcttcct gcagagcgta gcaaatgcct ttgcctgtgt cacgatggaa atgctgcagc
     1681 ccgttatgtc tggagagcgt gatgatgatg acagaggctt cctgaatttg ttccatcttc
     1741 tccatgctca ggcaaacttc cataaggagg tgctgtatct gaccatgaat gctgtctctt
     1801 cctaagtcag gaagcttgtc tcttaaagag tatgttcgcc tggactggca ttcaggagag
     1861 tgaggctttt tcacatccaa gtatagcacc tattgggctc ttgagaatct aattaaccag
     1921 aaactccagt tgcacagaac tttggctgta actgtttcac tttgattatt agaaaatagc
     1981 aggcaaacct aaaaatatat tgcaactttt ctggaaaaca a
//
