LOCUS       NM_001395590            5909 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus F-box protein 42 (Fbxo42), mRNA.
ACCESSION   NM_001395590 XM_006239253
VERSION     NM_001395590.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5909)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000005.1.
            
            On Jul 21, 2021 this sequence version replaced XM_006239253.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643288.24628.1,
                                           SRR26360190.1411008.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-266               JAXUCZ010000005.1  158734165-158734430
            267-533             JAXUCZ010000005.1  158754882-158755148
            534-650             JAXUCZ010000005.1  158756558-158756674
            651-785             JAXUCZ010000005.1  158765884-158766018
            786-939             JAXUCZ010000005.1  158781718-158781871
            940-1050            JAXUCZ010000005.1  158783075-158783185
            1051-1147           JAXUCZ010000005.1  158785759-158785855
            1148-1204           JAXUCZ010000005.1  158786271-158786327
            1205-1321           JAXUCZ010000005.1  158787414-158787530
            1322-5909           JAXUCZ010000005.1  158787973-158792560
FEATURES             Location/Qualifiers
     source          1..5909
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /map="5q36"
     gene            1..5909
                     /gene="Fbxo42"
                     /note="F-box protein 42"
                     /db_xref="GeneID:362646"
                     /db_xref="RGD:1304787"
     exon            1..266
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            267..533
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     CDS             284..2437
                     /gene="Fbxo42"
                     /codon_start=1
                     /product="F-box only protein 42"
                     /protein_id="NP_001382519.1"
                     /db_xref="GeneID:362646"
                     /db_xref="RGD:1304787"
                     /translation="MASSSDSEDDSFMAVDQEETALEGTMEQDEDPHPVLEVEETRHN
                     RSMSELPEEVLEYILSFLSPYQEHKTAALVCKQWYRLIKGVAHQCYHGFMKAVQEGNI
                     QWESRTYPYPGTPITQRFSHSACYYDANQSMYVFGGCTQSSCNAAFNDLWRLDLNSKE
                     WIRPLASGSYPSPKAGATLVVYKDLLVLFGGWTRPSPYPLHQPERFFDEIHTYSPSKN
                     WWNCIVTTHGPPPMAGHSSCVIGDKMIVFGGSLGSRQMSNEVWVLDLEQWAWSKPNIS
                     GPSPHPRGGQSQIVIDDATILILGGCGGPNALFKDAWLLHMHPGPWAWQPLKVENEDH
                     GAPELWCHPACRVGQCVVVFSQAPSGRAPLSPSLNSRPSPISATPPALVPETREYRSQ
                     SPVRSMDEAPCVNGRWGTLRPRAQRQTPSGSREGSLSPARGDGSPILNGGNLSPGTAA
                     VGGASLDSPVQVVSPSTPSASDGYDLKVGLSLVPRRGSLPDQKDLRLSSIDVNWDLKS
                     ASTSSRVDSTDSRTVAGSVRHPPEQTNGVHTPPHVASALAGAVSPGALRRSLEAIKAM
                     SSKGPSASAALSPPLGSSPSSPGSQSLSSGETVPIPRPGPAQGDGHSLPPIARRLGHH
                     PPQSLNVGKPLYQSMNCKPMQMYVLDIKDTKEKGRVKWKVFTSSSVVGPPETSLHTVV
                     QGRGELIIFGGLMDKKQNVKYYPKTNALYFVRAKR"
     exon            534..650
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            651..785
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            786..939
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            940..1050
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            1051..1147
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            1148..1204
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            1205..1321
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
     exon            1322..5909
                     /gene="Fbxo42"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcttctccc agtctgagca gcagcggcgg tggcatcagg gacggcggcg gcggcggcgg
       61 cggcggcggc ggcggtagcc gcgacggcgt ttcagtggag gaagatggcg gctccgggcg
      121 accccgggtt ccgccagctg tgaagatccc cggagcacag caagcaccgg cctgaggcag
      181 agcggctgtg ctctggccct ggccctggct ccttcgccac cttcaccgga gacgcgaaac
      241 cgagagcgcg gagcgggctg gcccagagct tcaagtgtgt gtcatggcca gctcctcaga
      301 cagtgaagat gacagtttca tggccgtgga ccaagaagaa actgcactgg aagggacaat
      361 ggagcaagat gaggacccac acccagtatt ggaggttgag gaaacaagac ataataggtc
      421 catgtctgag ctgccagaag aggttttgga gtatatcctg tccttcctct caccatatca
      481 ggaacacaaa accgcagctc tggtctgcaa gcagtggtat cggcttatca aaggtgtagc
      541 ccaccagtgt taccatggtt tcatgaaggc tgtccaggaa ggaaacattc agtgggagag
      601 ccgaacttac ccttatcccg gaacccccat cactcagcgc ttctcccaca gtgcatgcta
      661 ttacgatgcc aatcagtcta tgtatgtctt tggaggctgt acccagagca gctgcaatgc
      721 tgccttcaat gacctctgga ggctcgacct aaatagcaaa gagtggattc gaccgttggc
      781 ctcagggtcc tatccttccc ccaaagctgg ggccactctg gtcgtgtaca aggacttgct
      841 agtgctattt ggtggctgga caaggccaag tccctatccc ttacaccaac cagagagatt
      901 ctttgatgaa attcacacat actcaccatc taaaaactgg tggaactgca ttgtcaccac
      961 acacgggcct cctcctatgg ctggccattc ctcctgtgtg ataggtgaca aaatgattgt
     1021 cttcggtggc tccttaggat cccggcagat gagcaatgaa gtctgggtcc ttgacctgga
     1081 gcagtgggcg tggtccaagc cgaacatctc tggccccagc cctcaccccc gaggtggcca
     1141 gtctcagatt gttatagatg atgcaaccat cctgatcctt ggtggctgtg gcggtcccaa
     1201 cgctctgttc aaagatgcct ggctgctgca catgcacccg ggtccctggg cctggcagcc
     1261 acttaaggta gaaaacgaag accatggtgc cccggaacta tggtgtcatc cagcctgccg
     1321 ggtgggacag tgtgtggtgg tcttcagcca ggcgcccagc gggagagcgc ccctcagccc
     1381 cagtttgaac tctcgcccat cacctatcag tgccactcct ccagccctgg ttcctgagac
     1441 ccgagagtac cgctcccagt ccccagtgag gagtatggat gaagctcctt gtgttaatgg
     1501 ccgctgggga acactgaggc ccagggctca aaggcagact ccctcaggtt cccgggaagg
     1561 gagcctctcc ccagccagag gagatggctc tcccatcctc aatggtggaa atttgtctcc
     1621 agggacagca gctgtcgggg gtgcttcctt agacagccct gtgcaggtgg tatctccaag
     1681 cactccatct gcctctgacg ggtatgacct aaaagtaggg ctttctctag tcccccggcg
     1741 agggtcttta ccagatcaga aggacctgag gttaagctct attgatgtga attgggacct
     1801 gaagtctgca tccactagca gtcgtgtgga cagtacagac agcaggacag ttgcggggag
     1861 tgtaagacac cctcctgaac agaccaatgg tgttcacacc ccaccgcatg tggccagtgc
     1921 ccttgccggg gctgtatctc ctggtgccct gcgtcggagt ttggaagcca tcaaagcaat
     1981 gtcatccaaa ggcccctcag cctcagcagc actaagtcct cctcttgggt cttctccaag
     2041 ctcccctggg agtcagagtc tgagcagtgg agaaacagta cccatccccc gcccaggacc
     2101 agcccaagga gatggtcatt ccttaccccc cattgctcgc cgcctgggcc accaccctcc
     2161 acagtccctc aatgttggca agcccttgta ccagagtatg aactgcaaac ccatgcagat
     2221 gtatgtgctg gacattaaag acaccaagga gaagggccgg gtcaagtgga aagtatttac
     2281 tagcagttct gtggttggac ctcctgaaac cagcctgcac acagtggtac agggccgagg
     2341 agagctcatc atatttggag ggctcatgga caagaagcag aatgtgaagt actatccaaa
     2401 aaccaacgcc ttgtactttg tgcgagcaaa gagataatgt gttcaacacc ccttcccttt
     2461 ctgtgtcttt taatttggaa ttttgcagtg tgcaaacatt tggactgaga cttgggaaaa
     2521 caacatgact cccacaaacc aaaactccaa ttccatgcct aacttgctcc aggctgggat
     2581 taaatcccca ctaaggaaaa gattatatat atacagatat attatatagc caacactgtt
     2641 tacaaataaa ggcgagatct tcctcctggt tcagatcagc tgtttcagtc ttagtggagg
     2701 caatgctggc cttttctact ctgctggtaa ctagagcagg aagtaagggg acagacagca
     2761 gtaacttccc acaagaagct gaagagcccc tgtgatcttt ccatggcctt ctcggagcca
     2821 gaaaccatgg cctcgacagg acaccaagga agaggcttca gatgctgtag gatcagagtc
     2881 aggacccgtg atggctctgg agaagcaccc tgtgcctggt cccttctgcc ctctgtgatc
     2941 cagagaagtc gcccaacaag aaacactttc ccacgtgctg gagtcgtgct gaaacaatgt
     3001 gcatagagcc gccatccctc cgtctgcctc ctgcctgtcc atggtctttt tgggtccttt
     3061 ctatgtgtct cagcaaacac tcagtgtctg attaggggat tttctgacaa tcgtgtttgg
     3121 ttgcaagttg ccaaaccata cttgttttcc ttttagaact gggtcctgag aggtctgtcc
     3181 tgtctgtagg ctgctccctg tccttctgtg gtttggtttg ggatgttttg ttgaattttt
     3241 tttgttctat ttggggcatt tggccttttt ttgtttgctc gtttaaagca ccagaacttt
     3301 ctcacttctt cctctctgac aaagctccag tgtccacaga attcagacat tttagagcct
     3361 tcctggcacc ctcagggccc gttgggatcg acccacgcag tgtgctggtc tacatctgtg
     3421 accctagcac tcagggcaga ggcgggatgg tttcaggttt aggaagcctg gataatgatg
     3481 agactctcaa caaaacaaag taaaattaag atgccaggat cattttaaca aaatctgtga
     3541 agcatcaaaa gacacctttt atttttttcc aaggcagatc tcactacgta cctcacagat
     3601 cctcctgcct ctgcctgtca cttgtgatac caccctgtgt gctgtgctgt tgacaagtga
     3661 ctggcctgag tatcatgtcc ttgacgttgg agatacacac tgacccgggg gtagctccgt
     3721 ccttcatgtc gtcttgtccc tgtgtccccc aaaccaggac agtggtttgt ttgttttgtt
     3781 gttgtttttt atagagaaag ctataaatta gtggtctcta agccacagcc tggacacagg
     3841 aaaaatcaaa gtaagattat ttcaaatgac aatgcaactc tggttttggt ggtttctcat
     3901 cagtgggtaa aggattttta ttttgccttt aaaacagaac ttgaaacaac aacagcagca
     3961 gcagcagcat caccccaccc ccggcagcat ctcccaggca cagggctgct gcagcttggc
     4021 ctagctcatg gccagcactc cacctatccg accgacagac aagtgtgtca gtctgctccc
     4081 agctgttagc tttgctctag tgatcttggc aagagcacac gcgcgcgcac acacacacac
     4141 acacacacac gcacgcacgc cccagtctcg aagccccaga aagggctggc tctagaggag
     4201 gggtatgcac tctggagctg ctcccagggg atcacccccc gtgcctactt cctgcgtgcc
     4261 ccaccactcc agctccctgc tctgttgctg ccgccagtcc tttggccgag actgttcgat
     4321 ctgtggggtc ttgactcaag agatgaggcc agcacataag cagcctagca ttcattgctg
     4381 aaccctcttt gtggtgtttg cgtgtggatg gcgcctgtgg acttggtctc tacttaaaca
     4441 tcaactatga ggacacctga aaattcagaa tctctacttt gtagtctttc tctttccctg
     4501 tggccttcct aagctggttg tcaactgttg attcttcgac ttttcccaag tagacaggca
     4561 ggaaaaatag taggcgatgg gaagcgatgg gttcctctgc actctggggt cctggggcac
     4621 tgctgagagc aaggggtctc cagtccctcc cgagaaaaca gatcaagtct cgcttgcacc
     4681 cagccctgtg ggacttggtg gtccctgagc cctgtagatg ttgctgtggg aagcagctca
     4741 gcagtggaga tggtggtctc ctcagcctca tgaggctgag cgtttactac gacttccagt
     4801 atctcagcag agctcagcat ccccacacca ccatcagttc agatttaacc acgacccttt
     4861 tgacacgata ccaattttgt cttaaaattc accaagagac atgagacaaa atattttgtt
     4921 tgaaccctca ggagcaccta aagaaaatat ttatcagtat ttaagtattt aaaatacatc
     4981 ttgtttctac ttgaagcttt aaccctttcc attcctgcaa gtgtgccttt gagagccctc
     5041 ggtcatatta acgtcagcca ttttgttggc ctcctgtgag agttctggac gctgctctgc
     5101 tcctgaaaga gcttcctgtt catgcatgcc acactgtgca gcagagaaca ttcgttttca
     5161 ctcctgtttc tgcctttctt ccttgcctgg gatgaggact ccgccatccc tgccttctga
     5221 ttttaatgtt tgagctctgg ccagcactga aaccatcaac tgtggaggag tggtcttggc
     5281 actccctgag gagaggagag ggcagggcag ggcagggcag cactgcagga ggctcaactt
     5341 ggaaagacag gaagctgctg cggtggagca aggggaccct cccttcattt gtcttaagtt
     5401 ccttctgctt tgctttctcc cttccccttc agtctgtcca tctgtctgtc cttgtcctca
     5461 tggtgactct ggcatgggtg atgcactctg tttgcattat ctgtggtctc accagcacag
     5521 acgacagcgg ggaggatctg aaggagtcca gggtgaggaa gcctggcctc agagacagct
     5581 ctgctgtcgt ctgcaggtgg cctcttgctg cccccatcct tgggaatgaa agccaacctc
     5641 tggctccact ctgctcgctc tgccccctcc taccaaccag ggctcccgtc agcgtgcacc
     5701 caccgtgccc tggcaaagct ggtgctgtga gtgatgtttc ccatacaacc aggggtgccg
     5761 gcggcggcgc actccaatag tcattttagg cacatcacag tgtaggaatg aaaatggatt
     5821 ccatggatat ttaaatctgt cagtttcatt ttgttaatgt tttccccgat gactttttag
     5881 caatttaaca aataaaacaa cagactgaa
//
