LOCUS       NM_001107871            6709 bp    mRNA    linear   ROD 26-FEB-2024
DEFINITION  Rattus norvegicus F-box protein 41 (Fbxo41), mRNA.
ACCESSION   NM_001107871 XM_001073977
VERSION     NM_001107871.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6709)
  AUTHORS   Ebstein F, Lange N, Urban S, Seifert U, Kruger E and Kloetzel PM.
  TITLE     Maturation of human dendritic cells is accompanied by functional
            remodelling of the ubiquitin-proteasome system
  JOURNAL   Int J Biochem Cell Biol 41 (5), 1205-1215 (2009)
   PUBMED   19028597
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000148.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001107871.3.
            
            On Jun 3, 2021 this sequence version replaced NM_001107871.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMD00132261, SAMD00132262
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, longest protein
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-321               JACYVU010000148.1  15369229-15369549   c
            322-482             JACYVU010000148.1  15353514-15353674   c
            483-1520            JACYVU010000148.1  15351479-15352516   c
            1521-1746           JACYVU010000148.1  15348678-15348903   c
            1747-1820           JACYVU010000148.1  15348148-15348221   c
            1821-2179           JACYVU010000148.1  15347548-15347906   c
            2180-2421           JACYVU010000148.1  15346557-15346798   c
            2422-2537           JACYVU010000148.1  15346263-15346378   c
            2538-2690           JACYVU010000148.1  15346013-15346165   c
            2691-2786           JACYVU010000148.1  15345787-15345882   c
            2787-2905           JACYVU010000148.1  15343784-15343902   c
            2906-3064           JACYVU010000148.1  15343345-15343503   c
            3065-3180           JACYVU010000148.1  15341167-15341282   c
            3181-6709           JACYVU010000148.1  15337519-15341047   c
FEATURES             Location/Qualifiers
     source          1..6709
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /map="4q34"
     gene            1..6709
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /note="F-box protein 41"
                     /db_xref="GeneID:312504"
                     /db_xref="RGD:1566130"
     exon            1..321
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            322..482
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            483..1520
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     CDS             622..3243
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /codon_start=1
                     /product="F-box only protein 41"
                     /protein_id="NP_001101341.1"
                     /db_xref="GeneID:312504"
                     /db_xref="RGD:1566130"
                     /translation="MASLDLPYRCPRCGEHKRFRSLSSLRAHLEYSHTYETLYILSKT
                     NSICDGAAAAAAAAAAASGFPLAPEPAALLAVPGARREVFESTSFQGKEQAAGPAPAG
                     PHLLHHHHHHAPLAHFPGDLVPASLPCEELAEPGLVPAARYALREIEIPLGELFARKS
                     VASSACSTPPPGPGPGPCSGPTSASPASPSPADVAYEEGLARLKIRALEKLEVDRRLE
                     RLSEEVEQKIAGQVGRLQAELERKAAELETARQESARLGREKEELEERASELSRQVDV
                     SVELLASLKQDLVHKEQELSRKQQEVVQIDQFLKETAAREASAKLRLQQFIEELLERA
                     DRAERQLQVISSSCGSTPSASLGRGGGGSASGPGLRGPGRMREHHAGPAVPSTYAVSR
                     HGSSPSTGASSRVPAASQSSGCYDSDSLELPRQEEGPSEDSGPGGLGSRAQATNGGSE
                     RSQPPRSSGLRRQAIQNWQRRPRRHSTEGEEGDVSDVGSRTTESEAEGPSDVPRPGPA
                     VAGPLNSCRLSARPEGGSGRGRRMERGSPSRSNEVISPEILKMRAALFCIFTYLDTRT
                     LLHAAEVCRDWRFVARHPAVWTRVLLENARVCSKFLAMLAQWCTQAHSLTLQNLKPRQ
                     RGKKESKEEYARSTRGCLEAGLESLLKAAGGNLLILRISHCPNILTDRSLWLASCYCR
                     ALQAVTYRSATDPVGHEVIWALGAGCRDIVSLQVAPLHPCQQPTRFSNRCLQMIGRCW
                     PHLRALGVGGAGCGVQGLASLARNCMRLQVLELDHVSEITQEVAAEVCREGLKGLEML
                     VLTATPVTPKALLHFNSICRNLKSIVVQIGIADYFKEPSSPEAQKLFEDMVTKLQALR
                     RRPGFSKILHIKVEGGC"
     exon            1521..1746
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            1747..1820
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            1821..2179
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            2180..2421
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            2422..2537
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            2538..2690
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            2691..2786
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            2787..2905
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            2906..3064
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            3065..3180
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
     exon            3181..6709
                     /gene="Fbxo41"
                     /gene_synonym="RGD1566130"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccggctccgc cccacctccg ggccgcctcc ctccctgtct cctagctgcg ccccggccga
       61 gcgccccctc ctatctcccc cttctccgcc ctgcgtaccc cgcccgtgat cgcatcgtga
      121 gcccctcccg ctgcgccggg ctgggggatt cggccgcccc cgccccaacc gggaggcggc
      181 ggcggccacc caaggctgca gtggggacca agatctaagg cccagcggcg gccctgcgtc
      241 tggaccgggc acgcgggggt ctgtgcctct gcgcccccag cccagggcca cggtgcctgg
      301 cctcaccaca ggctggaaga ggcacacaca aacacagccc tgatcaagct acaggacctc
      361 ctcagtagca cacagggttc cttcccacga agccctcagg gagagcctct tactctgact
      421 tatgcttggt cttgctttcc agctctggaa tcctgcagtg tattcggttt ggcttctctc
      481 ctcctccggg gccctggctg ttggtgtacc cagtcttttt gatctcacag gccgggccca
      541 cccgcggccc cccatgagcg cgcccggctg accctggagg cggccgcggt ggagccggcg
      601 cgccccaagg gcggctgggc catggcctcg ctggacctac cgtaccgctg cccgcgctgc
      661 ggggagcata agcgcttccg gagcctgtcg tcgttgcgcg cgcacctgga atacagccac
      721 acctacgaga cgctctacat cctctccaag accaacagca tctgcgacgg cgcggccgcc
      781 gctgcagctg cagctgccgc agcctctggc ttccctctgg cgcctgagcc cgcggccctg
      841 ctggctgtcc ccggggcccg gcgcgaggtc ttcgagagca cgtccttcca gggcaaggag
      901 caggcagcgg ggccagcgcc cgcggggccg cacctgctgc accatcatca ccaccacgcg
      961 ccactggcgc atttccccgg tgacctggtg cccgccagcc tgccctgcga ggagctggcc
     1021 gagccggggc tcgtgcccgc tgcgcgctat gcgctacgcg aaatcgaaat cccactcggc
     1081 gagctcttcg cgcgcaagtc cgtggcatcc tcggcctgct cgacgccgcc acccggacct
     1141 ggccctggtc cttgttccgg gcctacctct gcatcgccgg cgtcgccatc acctgcggac
     1201 gtcgcctacg aagagggctt ggcacgcctc aagatccgcg ccctggagaa gctggaggtg
     1261 gaccggagac tagagcggct gagcgaggag gtggagcaga agatcgcggg ccaggtgggt
     1321 cggctacagg ctgaactgga gcgcaaggca gcagagttgg agactgcacg acaggagagc
     1381 gcgcgcctgg ggcgtgagaa ggaggaactg gaggagcgcg cgtctgagct ctcgcgccaa
     1441 gtggacgtga gcgtggaact gctggcttcg ctcaagcagg acctggtgca taaggaacag
     1501 gagctgagcc gcaagcagca ggaggtggtg cagatcgacc agttcctgaa agagacggca
     1561 gcccgggagg ccagtgccaa gctgcggctg caacagttca ttgaggagct cctggagcgt
     1621 gcagacaggg ctgagcgcca gttgcaggtc atcagcagca gctgtggcag cactcccagt
     1681 gccagcctgg gcagaggagg tgggggcagt gcctcggggc ctgggctgag aggcccaggc
     1741 agaatgcgag aacaccatgc aggcccagct gtgccaagca catatgctgt atcacggcat
     1801 ggctcctctc ccagcacagg ggcctccagc cgtgtgccag ctgcatccca gagctcaggc
     1861 tgctatgaca gtgacagtct ggagctaccc cgacaagagg aagggccctc ggaggacagt
     1921 ggccctgggg gcttgggttc acgggcccag gcaaccaacg gtggttcaga gcggtcccag
     1981 ccccctcgta gttcaggtct acgaagacag gccatccaga actggcagcg ccgaccgcgc
     2041 cgtcatagca cggaagggga ggaaggtgac gtctcagatg tgggctcccg aactactgag
     2101 tcagaggctg aaggaccctc tgatgtccca cgccctggac ctgctgtggc tggacccttg
     2161 aacagctgcc ggctctcggc ccgccctgaa ggaggcagcg ggcgaggccg acggatggag
     2221 agaggcagcc cctcacgctc caatgaggtc atcagcccag aaatcctcaa gatgcgtgct
     2281 gccctcttct gtatcttcac ctacctggat acccggacac tgctacatgc tgcagaggtc
     2341 tgccgggact ggcgctttgt ggcgcgccat cccgctgtct ggacgagagt gctgctcgag
     2401 aacgctcgag tctgttccaa gttcctggcg atgttggctc agtggtgcac ccaggctcac
     2461 tcattaacat tacagaacct gaagccccgg cagcggggaa agaaggaaag caaggaggag
     2521 tatgcccgca gcacccgggg ctgccttgaa gcagggctgg agtccctgct gaaggccgct
     2581 ggtgggaacc tgctgatcct gcggatctcc cactgcccca acatcctcac tgaccggtca
     2641 ctctggctgg ccagctgcta ctgccgtgcc ctgcaggctg tcacctacag gagtgccacg
     2701 gaccctgtcg gccatgaggt gatctgggcc ctgggcgcag gctgcagaga cattgtctcc
     2761 ctccaggtgg ctccacttca cccctgccag cagcccaccc ggttcagcaa ccgttgcctg
     2821 cagatgattg gacgctgttg gccccacctc cgggccctgg gcgtaggtgg tgccggctgt
     2881 ggggtacagg gcctggcatc acttgcaaga aactgtatgc ggctgcaggt cctggaactg
     2941 gaccacgtgt cagagattac ccaggaggtg gcggcagagg tctgccggga aggcctgaaa
     3001 ggactggaga tgctggtgct cacagccacc cctgtcaccc ctaaggccct gctacatttt
     3061 aacagcatct gccggaacct caaatccatt gtggtgcaga ttgggattgc agattacttc
     3121 aaagagccca gcagtcccga ggcccagaag ctgtttgagg atatggtgac aaaactccag
     3181 gccctgagac ggaggcctgg cttctcgaag attctgcaca tcaaggtaga aggtggctgc
     3241 taacccgggt gaggggcggc agggcacctg ccagccccac accaagtgct ctttggacct
     3301 ctggaggggc cctggcttgg actagacctt tggaggctta gtgtttcccc aggttccaga
     3361 cagtggttga atatcctgtc cagttgggac agcagagtga caggtgaccc agagcactgc
     3421 ctgcccagga caggggctga aaagaagctg ccctgagaca cctcccccct cacattccca
     3481 gctgaaacag cctctggcac agccagcaag gagctgagcc gacacaccag cagctggttg
     3541 tcactgctca gaggatctgc agtagccacc cagcagctcc tcagctgctc aggcaggtct
     3601 ccttcctgag gccatctcct ggtcaggagc ctgtcaagcc acaggccaga aggggcttaa
     3661 ggcagctcag acatgacaag gaggactctt ctcccctttc cctgaccaag ccctctgtaa
     3721 ggcactccct ttggacagag agactttctt ccaggtccac attctcctgt gataatccag
     3781 gcaagtctag gaatccaagt acaaggttag ctgaagttgg ggcagggcca tagggttgaa
     3841 tttcaaaagg ttaaaaaaaa aaaaaaaaag gtctagaaca caccaggacg agacctgcac
     3901 ctcccaagca ggcagaggac tggccagttg gaggaggcta ctcctaagac agagttcttg
     3961 tcatcacact ccagagctaa gctcaaagta gtctataccg ctccttgctg agggatcaga
     4021 gagctggggt cccaccaaag ccctacagtg agaagggacc caggcatttt ggcaggattc
     4081 ccaagccttt caggtcccta ggccattggg aggggggact ctgggttacc tgctgtgctg
     4141 gagtttgggg gagggggagt ggcgttacct aacagaggaa tcacttccac agcccgtctt
     4201 cctgagtctt tacagtcctg ggctgaaact atagtaggag aatacttgtg gtatggtgtc
     4261 gctggccctt gcatcatacc caggaagtct ggtcaccaaa ccccacagac tgagcatccc
     4321 ctaactgaat tcctctgctc ggaacttgca gtggccaaga cacaggtctt ggccaccctc
     4381 atttgggcag atctttcaaa tgcctggttt gtcatccaca tcttagggtt ttctttgctc
     4441 ctttataagg tgggatcctc ttgccagttt tctccagctg tgcacaacct ggactgggca
     4501 caaacacatc tgtaggttgt tgccaaacaa gtcccttcca ctgctgcaca gcctccagct
     4561 ggatgctccc tgaccctata gctctgtccc agtttgtcat catcgctgag ctgtgtggct
     4621 tgttctgtac ctgctcctta cagactgaaa tgccaaggct gtcgtgctgg gtactccacg
     4681 cctcgtcctg catgtaacct tggctgtgcg gtatctatgc ccctacctct cacagctgcc
     4741 tccggttgct cccacctccc cagccttgtc cccaggagtc acaggcaaca gcacaacttt
     4801 cctccttcag tggcccagaa agggggtgga ggtgcgcttg ggccccagct gcctttagta
     4861 ggtcaggtgt ttgccagctg catccatgta gctcctgctt cctgtgactc tcaagactga
     4921 ggtgctgccc tttctgtctc ttggataaag cacaaagtaa tgttgttggc caagcctgcc
     4981 ccaagggggt tccgattcac aaccccagga tttggacatc tccctgggta ggggaggcac
     5041 ctgctgttgg gggaagtaga tcagggtgca cagccatcag ggcaagaagc tagctagccc
     5101 cgggcattct gatccacgga gagggaatcc tacccctaag aggtcccacc cgtgttcttg
     5161 ttctgagtaa aggtgagtaa agtgtaagtt ttaacctaag cctttaccaa cctaagtgac
     5221 aggtcactgt gtcctgcctg gctgagtctt gggcatcata gtcttcaggc atgctgagag
     5281 ccagcagctc tgacaccaag ttgtggaccc tttgccttct ccgaaggggg gcaatccctg
     5341 cctctggatg ctgtgctcat ttacatcttt agcagtcaca gagcctgttg ggcatggggt
     5401 gagcccctgg cttccttaga agcaccccag cctttcatca gctactcaaa gtcccctgca
     5461 tctcatactt actgaggcac aggaagcccg agtgggcatg ccctgctcca gaaagcagct
     5521 ctgggtcagc agagaaggct cacagagggc aaccacttgc tatctctcac actcccatcc
     5581 cctgccaaac agcctggcgc atctaagttg tggcatggtt tggcttgagt acttaatgct
     5641 tatgcaggct gctttccccc agttatggca aaaaggtatg cgccctgccc agacacccag
     5701 ctttccaccc atggagagta ccctaaaatc aggcttttct ttttttaaac cccattgaca
     5761 actgaggcta agtcagcctc aggaattgca tcagaaactt accaggcctt cttcccaagg
     5821 cctgctttgc tctgtcacca gccctgatct tgaatccaga acacaggcaa taagctgtca
     5881 actccagtgt gtaaggcaca atgttgaagg acaatttccc agagttgaca gctggtgcca
     5941 aagacagttc ccggtgaact tggagaggtg agacctcagt gggacatggt ccagtgcccg
     6001 gtggagttaa gaactgatgg ggtctaccct agtcaccagc ctgaggacct gacagtttcc
     6061 tgcccttggt ggccatgctt tttcatccag ccttggctca ggccagcatc tctctgtata
     6121 tattactgtg tatattcact cctggacaag tgagctcagc tgtagtcctt gcctgaggac
     6181 aagtcttaag ggtgggtgaa gagcagacca ttaggctttc cttaactttt tgggacctta
     6241 gtccttagac tgcccgacaa tcaagcaggc accccaccag gaggccagct ctgggcctct
     6301 gtggttatta cagccctggg gaggcttgac ctggaattcc caaggcttta ctcggccctg
     6361 gcagggatct caggcaggga cctgaggtgg ctcaagaggg cacagctagc ccttaggccc
     6421 tgactccctg cacagccagg ctgcaacctg ccctcatgca cactaggcag aggggtggac
     6481 aggaactttt gattttagtt ttgtttctaa agtggtgcct gtacctccag cccccagggg
     6541 gccctccctg gccccactta cctgccccac caggcattgc cattccagca ctttgcccca
     6601 tgtcgcccag atgccctttg cagaatgtat ccgagcgtat gtatttaaaa ggactcgtgg
     6661 gcgtcagaat ttatggttct gtatccaata aaagatggtg aactgaaaa
//
