LOCUS       XM_039088907            3878 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus F-box protein 40 (Fbxo40), transcript
            variant X3, mRNA.
ACCESSION   XM_039088907
VERSION     XM_039088907.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051346.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039088907.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3878
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="11"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3878
                     /gene="Fbxo40"
                     /note="F-box protein 40; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     mRNAs, 24 ESTs, 3 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     7 samples with support for all annotated introns"
                     /db_xref="GeneID:363790"
                     /db_xref="RGD:1309781"
     CDS             425..2557
                     /gene="Fbxo40"
                     /codon_start=1
                     /product="F-box only protein 40"
                     /protein_id="XP_038944835.1"
                     /db_xref="GeneID:363790"
                     /db_xref="RGD:1309781"
                     /translation="MGRARRPPPALHRHCEGCIDRHCRVPAEPSVSCLVISCHLLCGA
                     TFHMCKESEHTLLCPLEQVPCLNSEYGCPLSMARHKLAKHLQVCPASVVCCSMEWNRW
                     PNVDSETVLHENIMKESPSEECLDTALALQDQKVLFRSLKMVELFPETRDATEEEPAM
                     NGDTSWEETAGAVGGVDAGLVPNSCLPATNGQTMELSQEERDALAKTKEGMDLDKFGK
                     WESMFSKEHAASVLTGSSGKSEDKNENVSGKEQRSGDGSTGDAECSTERRGPQESPKP
                     QEPPTTIEMTGLAPWQDGVLERLKTAVDAKDYNMYLVHNGRMLIHFGQMPACTPKERD
                     FVYGNLEAQEVKTVYTFKIPVSYCGKRARLGDAMLRCRPSEHKAVDTSDLGISVEDLP
                     KSDLIKTTLQCALERELKGHVISESRSIDGLFMDLATQTYNFESEQFSSETVLADLLG
                     TTQSGGLHVELHSECVTRRHNKSSSAFTFTCNKFFRRDEFPLHFKNVHTDIQSCLNGW
                     FQHRCPLAYLGCTFVQNHFRPPGQKAKVIYSQELKTFAIKPEVAPELSEKWKSDHLSG
                     RDGKSLNSLTSLPLEVLQYIAGFLDSISLSQLSQVSVLMRNICATLLQERGMVLLQWK
                     KKRYSHGGTSWKVHNQIWQFSSLFSKIKSWEFNDVTSMSEHLKTCPFNVVEHKTDPIR
                     LTSMCQPQEQARESLVSTFRARPRGRHS"
ORIGIN      
        1 cctgcccacg gcacacacag ggctggggct gttctggcct taccctgacc cttcctgcaa
       61 aggctttcct ccttcctctg tgaaagcgag cccggggttg gcataagtgc tactttccca
      121 tgggctctca tctgctcccc cagcacttag acattgagtg ttgataacct acagacgaaa
      181 gaagtcaact cgggtcctct gctgcagcag aagcaccggc agccaccgcc tccagacctg
      241 cttgatcgac agcaaagggc tggtagctgc ggatgctggg ccagcttgta ccatttaggg
      301 agcacaatat tgaattcatt gtgggtggtg ccgcccaggc ctggtcatcc tgagttccat
      361 aagaaaggaa gctaagcaag acctgaaaag caaaccaagt taagaagcca gaagtgggga
      421 agccatgggc cgagcacgca ggcctccacc tgcactgcac aggcactgcg agggatgcat
      481 cgaccgccac tgccgtgttc cagcggagcc cagcgtctcc tgcctggtga taagctgtca
      541 cctgctctgt ggcgctacct tccacatgtg caaagagtca gagcatacgc tcctctgccc
      601 tctggaacag gttccgtgcc tcaactctga gtatggctgc ccgctctcca tggcacgcca
      661 caaactggct aagcacctgc aggtgtgccc cgccagcgtg gtctgctgct ccatggaatg
      721 gaaccgctgg ccaaacgtgg actcggaaac agtccttcat gagaacatca tgaaagagag
      781 ccccagcgag gagtgtttgg atacagccct ggccctccaa gatcagaagg ttctcttcag
      841 atccttgaaa atggtagagc tttttccaga aaccagagac gccaccgagg aggagccagc
      901 catgaatggc gataccagtt gggaggagac tgcgggcgca gtcgggggcg tggatgcagg
      961 gctagtacca aactcttgtt tgccggcaac caatgggcaa acgatggagc tcagtcagga
     1021 ggaacgagat gcattggcca aaaccaaaga agggatggac ctggacaagt ttggcaagtg
     1081 ggaaagtatg ttcagcaagg agcacgcagc ctctgtttta acaggttcct cggggaaaag
     1141 tgaagacaag aatgagaatg tgtctgggaa agagcagcgc tctggtgatg gtagcacagg
     1201 ggatgcagag tgttctaccg aaaggagagg accacaggaa agcccgaagc cccaggaacc
     1261 tcccaccacc attgagatga cagggcttgc tccctggcaa gatggcgttc tggaaagact
     1321 aaaaacagca gtggacgcca aagactataa catgtatctg gtgcacaatg gacggatgct
     1381 catccacttc gggcagatgc ctgcttgtac gcccaaggag agagacttcg tttacggcaa
     1441 cctcgaagct caagaagtga agacggttta taccttcaaa attcccgtga gctactgcgg
     1501 gaagcgagct cgcttgggag atgccatgtt gaggtgcaga ccaagtgagc acaaggccgt
     1561 ggatacttcc gacttgggca tctctgtgga ggacctgccc aaatccgatc tcatcaagac
     1621 caccctccag tgtgctttgg aaagagaact caaaggccac gtcatctctg agtccaggag
     1681 catcgatgga ctctttatgg atctcgccac ccaaacatac aactttgagt cagaacagtt
     1741 ttcctcagag acagtgttgg ctgacctcct aggcactacc caatccgggg gcctgcatgt
     1801 ggagctccac agtgagtgtg tgaccagaag acacaacaaa agcagctcag cttttacttt
     1861 tacctgcaac aaattcttcc ggagggatga atttcccctg cacttcaaga atgtccacac
     1921 cgacattcag tcgtgtctca atggctggtt ccagcatcga tgccccctcg cctacttggg
     1981 atgtacattt gttcaaaacc acttccgccc ccctggacaa aaagcaaaag tgatctatag
     2041 tcaggagctg aagacctttg ccatcaagcc agaggttgct ccggaactga gcgagaaatg
     2101 gaaaagcgac catctctcag gccgcgatgg gaaaagcctg aattctctaa ccagcctgcc
     2161 cttggaggtt ttgcaataca ttgctgggtt tctggacagc atcagcctgt cccagttatc
     2221 ccaggtatca gtactgatga ggaacatctg tgcaacgttg ttgcaagaga gagggatggt
     2281 cctcttgcaa tggaagaaga agaggtattc tcatggaggc acctcctgga aagtccacaa
     2341 tcagatctgg cagttcagca gcctcttctc aaaaatcaag agctgggagt ttaatgacgt
     2401 cacctccatg tccgaacacc tgaaaacctg tcctttcaat gtcgtggagc ataagactga
     2461 ccccattcgt ctgaccagca tgtgccagcc ccaagagcag gccagggaga gcttagtgtc
     2521 cacgtttagg gcccgaccgc ggggaaggca ctcttaaaga tctgcacacc gctgctcctg
     2581 gcttctcaga attattcaaa gtaggacagt gtggtttgaa acctgcacat ctagaccatg
     2641 tgtggagccc ttcaggcctt agcaagtaca ctaggacact agtttttgag ctatggctcg
     2701 tatgatagtg ccacattttt tgagccttac cttgtttctt tcctccctta aaatagataa
     2761 gtcaggggag aaaattaata gtttaagccc atttgatgaa tgaacccaag ttcttagttg
     2821 actggagaac aaggacattg taaggagcat agactactac ttctacattg agcagaaatg
     2881 tagcagaatt tacaagcccc tttccagttc tcgggaaggt gacacaggga ccgggtctga
     2941 ggtgcagtga cctcccaggg tattcaggtg gagggaattc aactggaaga ttctgaagct
     3001 cggttggtct tgacaattca gggcttttta gtcaccctac tgcatcaaag cccagatggt
     3061 tttaaggcaa cccaagagaa cgggccacac tgtgtaagca cagcagtttc aaggatacca
     3121 caagccaaag caaaacagtc tgctgtatat agtcttggca acaccaagaa aaaactcttt
     3181 aaaatgaagg aaaggccaaa gttctctgga agcaaagtgg ctcctggttg agagccactg
     3241 tcctaaagga tgctacatca gcagtgggga gttagaatgc gctcactttt actgtgacaa
     3301 atctgacctt acttggcctg tataattcaa cacaactctt gcttgtttta ctaaatacgt
     3361 gttaaacatg tagtgttgct aaattgagaa ccaggtagag cagatctacc cgatatggca
     3421 ttttgtcctt gggccacaaa gtcatatatc ttccctgccc tctttaagga aacctgaaac
     3481 caggaaagtc atttagctta ggttaagttc ctcttccctt aattggtgcc attttccagc
     3541 aactctagaa gttctcaagc taatgaaaaa cgaggaaaag gggaggaaag cgtcacaggg
     3601 aaccagccat ccaagaatcc aaatgatgga gtcttgccaa cctgtgagct cgttgtctgg
     3661 gcatctgtct ctctgaccct ggttcagagc tggtgcagac gaagagggtg gtgcagatga
     3721 agaaggtggt gcagacgaag ctggtgcctc tgcaaaggca gcagagcaag tccattctga
     3781 aagcatgctc actctccgct gtattcctca catgctattg ttaacacgat gctgttcttt
     3841 atgcctgatc tttacagttt ggtttggatt tcaccact
//
