LOCUS       XM_039111020            4683 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus F-box protein 10 (Fbxo10), transcript
            variant X1, mRNA.
ACCESSION   XM_039111020
VERSION     XM_039111020.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051340.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jan 12, 2024 this sequence was replaced by
            NM_001427214.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4683
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="5"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4683
                     /gene="Fbxo10"
                     /note="F-box protein 10; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 14
                     ESTs, 5 long SRA reads, 6 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 123 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:362511"
                     /db_xref="RGD:1305465"
     CDS             156..3008
                     /gene="Fbxo10"
                     /codon_start=1
                     /product="F-box only protein 10 isoform X1"
                     /protein_id="XP_038966948.1"
                     /db_xref="GeneID:362511"
                     /db_xref="RGD:1305465"
                     /translation="METGGLPLELWRVILAYLHLPDLGRCSLVCRAWYELILSLDSTR
                     WRQLCLGCTECRHPNWPNQPDVEPESWREAFKQHYLASKTWAKNALDLESSICFSLFR
                     RKKERRTLSVGPGHEFDSLGSALAMASLYDRIVLFPGVYEEQGEIILKVPVEIVGQGK
                     LGEVVLLASIDQHCSTTRVCNLVFMPAWFSPIMYKTTSGHIQFDNCNFENGHIQVHGP
                     GTCQVKFCTFKNTHVFLHNVPLCMLENCEFVGSENNSVTVEGHPSADKNWAYKYLLGL
                     IKASPIFLPAEDNDFLMSLDLESQDQAWSPRTCDIVIEGSQSPTSPVSSSPKPGSKEG
                     EVGSDGERVAQTPDSSDGGLSPSGEDEDDEQLTYRLSYQVQGPRPVLGGSFLGPPLPG
                     ASIQLPSCLVLNSLHQELQKDKEAMALASSVQGCLIRKCLFRDGKGGVFVCSYGRAKM
                     EGNVFRNLTYAVRCIHNSKIVMLRNDIYRCRASGIFLRLEGGGLIAGNNIYHNAEAGV
                     DIRKKSNPLILCNQIHHGLRSGIVVLGNGKGVIRNNQIFSNKEAGIYILYHGNPIVSG
                     NHIFKGRAAGIAVNENGKGLITENVIRENQWGGVDIRRGGVPILRSNLICFGYSDGVV
                     VGDEGRGLIEGNTIYANKGCGVWMMSSSLPHVSSNHVSYNGLYGVAVFSQKDGEFPGG
                     HGAQENFSEDGDAILWETELEKEDDPLRRPVTVALVESNSINHNGASGIFVQSSEALQ
                     VTANVIHANGDRGVTIVQSSQLTRVANNSISCNRQSGVKVEFQCKVELRGNGIYDNRG
                     HGIITKGDGTAVVENDIIGNRGSGLQLLPRSDTKVLKNRIHSFRAYGIAVRGRVKALV
                     QENIIFQGKTNKTIFQQITNNRECIMQNNKFLVFKKKSDTWRLVNPPARPHLENSLRG
                     SSAAHSGHKVAAMATRITARVEGGYHSNRSIFCTIL"
ORIGIN      
        1 gtccagccct acacccgcgt cacgtgacag ccatcggggg cggggcgcgc ggcgaagtcg
       61 gaccccctct ggcagagctc cgcagtcctc tggcagccct gcggcttcca gggcgtcgcg
      121 gccgcggccg gggagcgcgg ctcccagagg tgaccatgga aacgggcggc ctccccctgg
      181 agctgtggcg tgtgatctta gcctacctgc atcttcctga cctgggccgc tgcagtctgg
      241 tgtgcagggc ctggtatgag ctgatcctca gcctggacag tacccgttgg cgacagctgt
      301 gtctgggctg cactgagtgc cgccacccca actggcccaa ccagcccgat gtggagcccg
      361 agtcctggag ggaggccttc aagcagcact atcttgcctc taagacctgg gctaagaacg
      421 cactggactt ggagtcttct atctgcttct ctctgttccg caggaagaag gagcgacgta
      481 ccttgagtgt tgggccaggc catgagtttg acagcttggg cagtgcctta gccatggcca
      541 gcctctatga tcgaatcgtg cttttcccag gtgtgtacga ggagcaaggg gaaatcatcc
      601 tgaaggtgcc agtggagatt gtgggccaag ggaagttggg tgaggtggtc ttgcttgcca
      661 gcattgacca gcactgctca accacccgtg tgtgcaatct tgtcttcatg ccagcctggt
      721 tctcaccaat catgtataag accacatcag gtcacatcca gtttgacaac tgcaactttg
      781 agaatggaca catccaggtc catggcccag gtacctgcca agtgaaattt tgtaccttca
      841 aaaataccca tgtctttttg cacaacgtgc ccttatgtat gttggaaaac tgtgaatttg
      901 tgggcagcga aaacaactct gtgaccgttg agggtcaccc gtcagccgac aagaactggg
      961 cctataagta cctgctgggc cttatcaagg cctctcccat cttcctccct gcagaggaca
     1021 acgacttttt aatgtccttg gacttagaga gccaggacca ggcctggagc ccaaggacct
     1081 gtgacattgt catcgagggc agccagagtc ctacaagtcc agtctctagc tctccaaagc
     1141 caggctccaa ggagggagag gtgggcagcg atggggagag agtggcccag actccagaca
     1201 gcagtgacgg cggcctgagc cccagcggtg aggatgagga tgatgagcag ctcacctaca
     1261 gactgtccta ccaggtgcag ggcccccgcc ctgttctggg cggctccttt ctgggccctc
     1321 ccctacctgg agcatccatt cagctcccca gctgtctagt tctgaactca ctgcaccagg
     1381 agctgcagaa agacaaggaa gccatggcgc tagccagctc cgtgcagggc tgccttatcc
     1441 gcaagtgcct cttccgggac gggaagggcg gtgtcttcgt ctgctcttat ggccgcgcca
     1501 agatggaagg aaacgtcttt cggaacctga cttatgcagt gcgatgtata cacaatagca
     1561 agatcgtcat gctcaggaat gatatttacc gctgccgggc atcaggcatc tttcttcgat
     1621 tggagggcgg aggcttgatc gctggcaaca atatttacca caatgcagag gctggcgtgg
     1681 acattcggaa gaaatccaac ccactcatcc tgtgtaacca gatccaccac ggtcttcgat
     1741 ctggcattgt tgtccttggc aatgggaaag gtgtcatcag gaacaaccaa atcttttcta
     1801 ataaggaggc tggcatttat atcctgtacc acggaaatcc gattgtgagc ggaaaccaca
     1861 tcttcaaggg gcgtgcagct ggcatagcag tgaacgagaa tggcaaaggc ctcatcacag
     1921 aaaacgtcat ccgcgagaac cagtggggag gtgtagacat ccgccgaggc ggcgtcccga
     1981 tcctcaggag caacctcatc tgctttggct actcagatgg cgtggtggtg ggggatgaag
     2041 gcagaggact gatagaaggg aataccatct atgctaacaa aggatgtggc gtgtggatga
     2101 tgtcctccag cctgccccat gtctccagca accatgtgag ctacaacggc ctgtatgggg
     2161 tggcagtgtt cagccagaaa gacggtgagt tccctggggg ccacggggct caggagaact
     2221 tcagtgagga cggggacgcc atcctctggg agacggagct ggagaaggag gatgacccac
     2281 tgcgccggcc cgtcaccgta gctctcgtgg agtccaacag tattaatcac aatggagcat
     2341 caggaatctt tgtccagagc agcgaggcac ttcaggtcac cgccaatgtg atccatgcca
     2401 atggggacag aggcgtcacc attgttcaga gcagccagct cacacgagtg gctaacaaca
     2461 gcatctcctg caatcgccag agtggggtca aggtggaatt tcaatgcaag gtggagctcc
     2521 ggggcaatgg tatctatgac aacagaggcc atggcatcat tactaagggc gatggtaccg
     2581 ctgttgtgga aaatgacatc atcggcaacc gcggcagtgg actgcagttg ctgcccaggt
     2641 ctgacactaa ggtactaaag aaccggatcc actccttccg ggcctatggc attgcagtgc
     2701 ggggccgtgt taaggccctg gtacaggaga acatcatctt ccagggcaag accaacaaga
     2761 ccatcttcca gcagatcaca aacaaccgag agtgcatcat gcaaaacaac aagttccttg
     2821 tcttcaagaa gaagtctgac acctggcgcc tggtgaaccc accagcacgg ccccacctgg
     2881 aaaactcact ccggggctcc tctgcagccc acagtgggca caaggtggca gccatggcaa
     2941 ccaggatcac agcccgtgtg gaaggtggct atcacagcaa ccgtagcatc ttctgtacca
     3001 tcctgtaagc gagaaggcct gcctcgggcc caggccccgg acggtgcaga gagctgcagg
     3061 ctgactcctg aggtggaagt taagcctggg aagtctccca gacccacccc catcttacaa
     3121 accaccactc ctgaagtggg ccctcggcct cctggggcct aagaacgagg agttacctct
     3181 agaaccctta gctccaaaac cttggcagga aggatcttgg gacatttccc caggtgcagt
     3241 tggagtgtct ccagtcactc cagtggcact cagaggttat gaagagctgc ggagacttaa
     3301 acagtacacg cagcttttag gtcagttgtt ccaagctaca gaagacctct cactttacac
     3361 agaccaagct gactcttctc agggaagaga acgcttactt ctgaccagga agtagctgtg
     3421 gtgaggtgga cacagctacc cctttcctga accttgactc tctgggtccc tcttgggcct
     3481 atgccagcct cccagccgcc cctgggagct gcagtgttta ttaaacagct ctcctagact
     3541 agcagcgcat ggtcctgtga gcaaggaagg gcttgggaca ggagttcttc ctgaaagctg
     3601 cctaggaatg acaggggaca tgttacaaat aagagggcag gggctgcctt cagtgtgtgg
     3661 gcaggggctg ggctgggccc cctaggatga acaaagttac tgtcctcaag gggtacccca
     3721 agttcagagc gttagcttag cacctgtcac aggattctga ctgtgtgcac acatacattc
     3781 cagctcccct agagtccagc ctgtctagac agacccctgc ctcaccccga cgtgtccatg
     3841 tcctcatggg tgaccagctg ccttgaccag cccttccgta ttccccactc tgtgccttgg
     3901 cttgagcttg tttttccccc tggcatggcc ctccccagct aactccatct gcagatccca
     3961 ccctttactc gagggtgact ttagctcgac actgccgtct ccatgtgact ctccccttgc
     4021 tcaggtgatc gtgtcgccca gcaccctcag ccttgcctgc cctcctgctc ctcaggacac
     4081 tgagcacttt ctgccttgct ttggaactct gggtccatac ccgtcctgcc cgtccgcctg
     4141 tgaactctct aaaggcagag ccacctgtct gtccttttgt cccagcccag agccagagtt
     4201 gagttagtgg ctgaagtgat gagaggtcca gctcccaaag ggcttcacca gacggcactg
     4261 acggtggcga gctttgcgag ccaggctgag gaagggatct gcatgcaggg ccagctctgc
     4321 ctgacgaccc ctttcccacg tggcctccac tgcagggccc tcaccagcct ttggggtcac
     4381 tgtcccacac tgggccctgt cccatgctgg ttctgtggag ccctaggtgc tgctgtgtgg
     4441 gtgggtggga gggggagctc tgacttctcc ctaagcactc tgggaagaac actggccttt
     4501 cccatgtgta gcactgtcca ctgcacttgt ctggtggccc caatgtgagt cgctgtataa
     4561 aaatgctgcc tttgttattt tgtaagaaat gacttttctg tgaaccaagt actcacgaaa
     4621 tctcagtaac caaaataaag ttctatattt taaaggaggt gcctccaggg cctcagcttg
     4681 gtc
//
