LOCUS       NM_001009504            3459 bp    mRNA    linear   ROD 18-FEB-2024
DEFINITION  Rattus norvegicus F-box and leucine-rich repeat protein 16
            (Fbxl16), mRNA.
ACCESSION   NM_001009504 XM_006246020 XM_579304
VERSION     NM_001009504.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3459)
  AUTHORS   Ebstein,F., Lange,N., Urban,S., Seifert,U., Kruger,E. and
            Kloetzel,P.M.
  TITLE     Maturation of human dendritic cells is accompanied by functional
            remodelling of the ubiquitin-proteasome system
  JOURNAL   Int J Biochem Cell Biol 41 (5), 1205-1215 (2009)
   PUBMED   19028597
REFERENCE   2  (bases 1 to 3459)
  AUTHORS   Liu,T., Ma,Z., Que,H., Li,X., Ni,Y., Jing,S. and Liu,S.
  TITLE     Identification and characterization of scirr1, a novel gene
            up-regulated after spinal cord injury
  JOURNAL   Exp Mol Med 39 (3), 255-266 (2007)
   PUBMED   17603280
  REMARK    GeneRIF: SCIRR1 ise involved in the succeeding injury and/or repair
            processes of the injured spinal cord
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JACYVU010000219.1.
            
            [WARNING] On Apr 3, 2024 this sequence was replaced by
            NM_001009504.3.
            
            On or before Oct 31, 2022 this sequence version replaced
            XM_006246020.4, NM_001009504.1.
            
            ##Evidence-Data-START##
            CDS exon combination :: AY823669.1, CV463503.1 [ECO:0000331]
            RNAseq introns       :: single sample supports all introns
                                    SAMD00132261, SAMD00132262 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-255               JACYVU010000219.1  2862842-2863096
            256-902             JACYVU010000219.1  2870111-2870757
            903-1411            JACYVU010000219.1  2871420-2871928
            1412-1496           JACYVU010000219.1  2872251-2872335
            1497-1560           JACYVU010000219.1  2872658-2872721
            1561-3459           JACYVU010000219.1  2873152-2875050
FEATURES             Location/Qualifiers
     source          1..3459
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q12"
     gene            1..3459
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /note="F-box and leucine-rich repeat protein 16"
                     /db_xref="GeneID:494223"
                     /db_xref="RGD:1309127"
     exon            1..255
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /inference="alignment:Splign:2.1.0"
     exon            256..902
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /inference="alignment:Splign:2.1.0"
     CDS             270..1709
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /note="spinal cord injury and regeneration related 1;
                     spinal cord injury and regeneration-related protein 1"
                     /codon_start=1
                     /product="F-box/LRR-repeat protein 16"
                     /protein_id="NP_001009504.1"
                     /db_xref="GeneID:494223"
                     /db_xref="RGD:1309127"
                     /translation="MSSPGIDGDPKPSCLPRNGLVKLPGQPNGLGAASITKGTPAAKN
                     RPCQPPPPPTLPPPSLATPLSRVALAGGPCPPASGPASGPVPGPPVERPPLATDEKIL
                     NGLFWYFSACEKCILAQVCKAWRRVLYQPKFWAGLTPVLHAKELYNVLPGGEKEFVNL
                     QGFAARGFEGFCLVGVSDLDICEFIDNYSLSKKGVKAMSLKRSTITDAGLEVMLEQMQ
                     GVVRLELSGCNDFTEAGLWSSLSARITSLSVSDCINVADDAIAAISQLLPNLAELSLQ
                     AYHVTDTALAYFTARQGHSTHTLRLLSCWEITNHGVVNVVHSLPNLTSLSLSGCSKVT
                     DDGVELVAENLRKLRSLDLSWCPRITDMALEYVACDLHRLEELVLDRCVRITDTGLSY
                     LSTMSSLRSLYLRWCCQVQDFGLKHLLAMRSLRLLSLAGCPLLTTTGLSGLVQLQELE
                     ELELTNCPGATPELFKYFSQHLPRCLVIE"
     exon            903..1411
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1412..1496
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1497..1560
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /inference="alignment:Splign:2.1.0"
     exon            1561..3459
                     /gene="Fbxl16"
                     /gene_synonym="Scirr1"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cttatttatc tgggcacagc ctcagcctcc ccggtgggag gctcagggcg gcagatcctc
       61 tcccaccggg gagctccgct ccggactctg ccgagagggc tctggcgcgg ggcgccgggc
      121 gcggggcgca gtccggccct gctagccagt ccagcacctc agccgcctcc gcgctcggcg
      181 gctcgggtgc tgggctcccc atgacgcgag gtcgcccagc ggacagcgtg gcatgagcca
      241 gaaaccctgg ccgagaacgt gcaaggaaaa tgtcgagccc tggtatcgat ggtgacccca
      301 agccttcatg cttgcctcga aacggtctgg tgaagctgcc tggccagccc aacggcctag
      361 gcgcagccag catcaccaag ggcacacctg ctgccaagaa ccgtccttgc cagccaccac
      421 ccccacccac ccttccacct ccaagcctgg ctacaccact gtcccgggtt gctctggccg
      481 gggggccatg ccccccagcc agtggaccag cctcaggccc agtgcctgga ccccccgtgg
      541 agcggccacc actggccaca gatgagaaga tccttaatgg actcttctgg tatttctcag
      601 cgtgtgagaa gtgcatacta gcccaggtgt gcaaggcttg gcggcgtgtg ctctaccagc
      661 ccaagttctg ggcaggcctc acgcctgtgc tgcacgccaa ggagctgtac aacgtgctgc
      721 ctggaggcga gaaggagttt gtgaacctgc agggcttcgc tgctagaggc tttgagggct
      781 tctgcctagt tggtgtctct gacttagata tctgcgaatt catcgacaac tactcgctct
      841 ctaagaaggg agtcaaggcc atgagtctca agcgctccac catcactgac gctggtctag
      901 aggtgatgtt ggagcagatg cagggagtgg tgcgcctgga gctgtcaggc tgtaacgatt
      961 tcaccgaggc tggcctgtgg tccagcctca gcgcacgtat cacctcacta agcgtcagtg
     1021 actgcatcaa tgtggcggac gatgccatcg ctgccatctc acaacttcta cccaacctgg
     1081 cagagctaag ccttcaggcc taccacgtga ctgacacggc actggcctac ttcacagcac
     1141 gtcagggcca cagcacccac acgttgcgcc tgctctcctg ctgggagata accaaccacg
     1201 gggtggtcaa tgtggtgcac agtctgccca acctcacctc actcagcctc tcgggctgct
     1261 ctaaggtcac tgatgatggg gtggagcttg tagccgagaa tctgcgcaaa ttgcgcagtc
     1321 ttgacctttc ctggtgccct cggatcacag atatggcact ggagtatgtg gcctgcgact
     1381 tgcaccgact ggaggagctc gtgctggaca ggtgtgtacg catcacggac actggtctca
     1441 gctacttgtc caccatgtcg tccctccgca gcctctacct gcgatggtgc tgccaggtgc
     1501 aggacttcgg gttgaagcac ctcttagcca tgagaagttt gcgactcttg tctctagcag
     1561 gctgcccgct cctaaccacc accgggctat ccggcctagt gcaactgcaa gagctggagg
     1621 agctggagct gaccaactgc cctggagcca ctcccgagct cttcaagtac ttctcgcagc
     1681 acctgccgcg ctgcctcgtc attgaatagc gcaggcttcc ccacccggcc gcgggaaccg
     1741 gcctcgccca gggcagtagc ccctcttcca cccctgccgg agcatcattt ctccgccctg
     1801 cgctggaggc ggggcaagct gagggaaacc ccgccccgtg cctccctagc tcctctgctc
     1861 tactgctcca tccccgtccg gggcaagagg cagaggggcc agccccacgc acgcacgcac
     1921 actcggggac tttgtgcatg cccctcgtgc ccgcactgca cgcccgccct ccaccatgcc
     1981 acagccgccg ccatcactcg cccgccttct gggggtctag gtccttttgg gggatgcttt
     2041 gagtgcatat gccctcagta gcttctccac ttcattctgc tctccgcctc ccctcgctgt
     2101 cccccccatc ccgggcaggg cccaagggga tggagggatt ggtcccccag gacttagggg
     2161 cttggaagag ccccaagggc ctcccacatc ttccactgca ccgcgcctgg agccctccaa
     2221 ggggtatgag gcgccacagg ccactgccaa agccatggcc ccctgaggag cccaacttcc
     2281 ccatgcccac ctgacctagt ggcttccctt cttccttgtt gccatatggg tcagttcttg
     2341 ttctctgtgt cccaccccca ctcccgcaac cccccatatc tcctttcccc ctggcctaca
     2401 gatccttggg ccctggccag gctgggacag ctttaggagg atgcagacct tggaacaatc
     2461 aacattagcc taaccggtgc ccattcaccc aagtgcaagg gtggaatagg cacctgacag
     2521 accctaatct ggagccaccc acggggctat taggccttgg gatcagccca cccatttcag
     2581 tccctaccca agctgagctc aggcctctca gcactgtgct tcaccctgga taggtctcct
     2641 caggtggaat ctgcagaggg cctggccatg ggtcagggtc agcactgacc agcgattctg
     2701 atcttccagt ggccagcaca cccttcacac cccaaggaag gagggctcct ttctagtcct
     2761 ttcccagctt ccaaaacttt cgcctgccca aaaggggttg tgaccatgtt ctgtcagatc
     2821 tcaagacatt tggaagtcct aggggatcct gacatataca tgacagtact gaagagggac
     2881 tgggaaccct tctctcccaa ccttgaaccc caggagacac agcacccaca actaatcttg
     2941 ggacacccct tatctggttg gaagagagta aactatttcc cagagagcca gagggagaga
     3001 gagagagaga gagagagaga gagagagaga gagagagaga gagagagaga aagagagaga
     3061 gagagctgct gttgacaaaa agtaagagtt caacagccca aagagttccc tgcccctgaa
     3121 gtgttggcca gggaggctcc aggctgaagt ggtcaggagc cagatttgtc agcccctctt
     3181 cccacagtcc cccaacaggg aagggaagct gcccatttgc ccaaagtatt aatgcaactg
     3241 aagctgtgat atttccaatg actgtaggag gaaaatttaa ggggagagag gaacacaaac
     3301 aaaaccaacc aacccctaaa atcattttct tattgtacat aacgacctca ttctcctgta
     3361 tatgcggaag atataacctt atatttggta agtgtttctt gtgctatttt atcacgtgac
     3421 ctgtttataa aaatatatat taaaaaaatt gtaaaaaca
//
