LOCUS       XM_001080034            5152 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus fibrosin (Fbrs), transcript variant
            X1, mRNA.
ACCESSION   XM_001080034
VERSION     XM_001080034.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_001080034.7.
            
            On Jan 21, 2021 this sequence version replaced XM_001080034.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5152
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5152
                     /gene="Fbrs"
                     /note="fibrosin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 9 ESTs, 1 long SRA read,
                     2 Proteins, and 100% coverage of the annotated genomic
                     feature by RNAseq alignments, including 189 samples with
                     support for all annotated introns"
                     /db_xref="GeneID:691899"
                     /db_xref="RGD:1594591"
     CDS             1009..3954
                     /gene="Fbrs"
                     /codon_start=1
                     /product="probable fibrosin-1 isoform X1"
                     /protein_id="XP_001080034.4"
                     /db_xref="GeneID:691899"
                     /db_xref="RGD:1594591"
                     /translation="METAAAPGPGWAAEGERRRRRCSRRDRDREQRRRRGPGGDAPRA
                     LLAAPRGSSSSSSPPPPARPWSSASSGERPGGLRRRRPRPRPRPPRPRARKRPAGSGS
                     RGEEEEEEEEGGADDGEAEEEPEEEEEEEDLIDGFAIASFASLEALQKDASLQPPERL
                     EHRLKHSGKRKRGGSSGATGEPGDSSDREPGRPPGDRPRKWPNKRRRKEAFSRHSLEA
                     GYICDAESDLDERVSDDDLDPSFTVSTSKASGPHGTFNGNCEAKLSVVPKVSGLERSQ
                     EQPPGPDPLLVPFPPKDPPPPPAPRPPVSSPTPLPATPSLPPPPQHQLQLRVSPFGLR
                     TSPYGSSLDLSTGSSSRPPPKAPAPPVAQPPPSSSSSSSSSSSASSSSAQLTHRPPTP
                     SLPLPLSSHSFPPHGLRPPPPPHHPSLVSPGPTLPPPPPLLQVPGHPGASAANALSEQ
                     DLIGQDLNSRYLNAQGGPEVVGAGGSARPLAFQFHQHNHQHQHTHQHTHQHFTPYPPG
                     LLPPHGHMFEKYPGKMEGLFRHNPYMAFPPAVPGLPPGLPPAVSFGSLQGAFQPKNTN
                     PELPPRLGPVLSGLPQKGTQIPDHFRPPLRKPGKWCAMHVRVAYMILRHQEKMKGDSH
                     KLDFRNDLLPCLPGPYGALPPGQELSHPASLFTATGAVHAAANPFTTAPGAHGPFLSP
                     STHIDPFGRPTSFASLAALSNGAFGGLGSPTFNSSAVFAQKESPGAPPAFASPPDPWG
                     RLHRSPLAFPAWVRPPETARTPGSDKERPMERREPSVTKEEKDRDLPFSRPQLRVSPA
                     TPKARAGEEGVRPAKESVRVKEERKEEAAAAAAAAAAAAAAAAAAAAAAAATTGPQGL
                     HLLLERPRPPPFLGPSLPDRCAGFPEPTWLAGPPRLARPPRFYEAGEELTGPGAMAAA
                     RLYSLDPAHPLLYSRLAPPPPPTATPGTPHLLSKTPPGALLGAPPPLVPAPRPSSPPR
                     APGPARADR"
ORIGIN      
        1 ctgagaagga agagggagga ggggcaggga agttctggtg gggaagaggc cgaagactcc
       61 caagaagaca acaggaggat acggtggagt tcctcgctgc ccagcggcct ttccggatcc
      121 ttctatatac aagccagtta ggaacggagg aaaggaggaa gagtctttta tgtcggagga
      181 cagagagaga agctctatcc gtcaccgttg cctcacatcc gggactttgg aaggcaggct
      241 ccgccccctt gcacctttca aggctacaag aggcgtagac ctctttaaat ctccttaaag
      301 gggtgggtac cgaactcggc cgactccaac gccagcctta aaggggaaag cagccgaagc
      361 tgacaaacaa ctcctgttgg aagaattggg acaagcggag ttttcctacc tcctgtccca
      421 cgcaagaagt tcattaaatt catcttaaag gggaagtgac agcttgtgaa gagctagaaa
      481 cttaactacg atctcttcaa aggaacagct cgctgtttga aggcctctgg actctttaaa
      541 ggggtggcct ctttcagccg gaggacttaa gacactttta aaggggaggt cgagctttcc
      601 gcccctttta aaggggtggt ccttcctctt cctctgggag acttgcctcg acccctggca
      661 cggggccgcc accgcactag accagccgga cacagtggag tcgtcttaaa ggggccgggg
      721 gctggacaat ttgaggcctc gccttaaagg gacggccgcc cagttttagt cgtcgcggcc
      781 ccgccagccc tatagggggg gccttcaggc ttgtcgcccc gggggcggcg ccggctctct
      841 gggccttggc cttggggcaa gccaggggcc agcggatcct gttttaaaga ggaagccgga
      901 gctctcttgt ccctgtgcaa gcgccagcgc cgcgctcacg acccggggcc tgtggacagg
      961 ccgcttcggg ccccgccacc tccggatgcg gcgctgaggg ccgtcaccat ggagacggcc
     1021 gcggccccag gcccgggctg ggcagctgaa ggggagcggc gacgaagacg ctgctcgcgg
     1081 cgagaccgtg atcgggagca gcggcgccgc cgaggtccag gcggtgacgc gccccgggcc
     1141 ttgttggctg ccccgcgagg ctcttcatcc tcgtcgtcac cgccgccgcc cgcccgtccc
     1201 tggtcctcag cttcatctgg agagcggcct gggggcctaa gacggcggcg gccccgaccc
     1261 aggcctcgac ccccgagacc gcgagctcgg aagcggcctg ccggttcggg cagccgcgga
     1321 gaggaagagg aggaggagga agaggggggc gcagacgacg gagaagccga ggaggagcct
     1381 gaagaggagg aagaggagga agacttgatc gatggttttg ccatcgctag ctttgccagc
     1441 cttgaggcct tgcagaagga tgcatctctt cagcccccag aacgactgga acatcggctg
     1501 aagcattctg ggaaacggaa gagggggggc tccagtgggg ccactgggga gccaggggac
     1561 agctcagacc gtgagcctgg tcgaccccct ggggataggc cccgcaaatg gcccaataag
     1621 cgaagaagga aagaggcctt ctcccgtcac tctctggaag ctggatatat atgtgacgca
     1681 gaaagtgatc tggatgagag ggtctccgat gatgaccttg acccttcctt tacggtctca
     1741 accagcaaag cctcgggtcc tcatggcacc ttcaatggga actgtgaagc aaaactgtct
     1801 gtggtcccta aagtgtcggg cctggagcgg agccaagagc agcccccggg gcctgacccg
     1861 ctgctagtgc ctttcccccc aaaggatcca ccacctccac cagcccctcg gcctcccgtc
     1921 tcatccccta cacccttacc agctaccccc agtctgccac ccccacccca gcaccagctg
     1981 cagcttcggg tctcaccctt cggcctccga acttctcctt atggcagcag cctggacctc
     2041 agcactggca gctcttcacg gccgcccccc aaggccccgg cccctcccgt ggctcagcct
     2101 cccccctcat catcctcttc gtcctcctcc tcctcatctg cctcctcctc gtccgcgcag
     2161 ctcacccacc ggcccccgac gccctcactg cccctgcctc tgtcctccca cagctttcct
     2221 ccccatgggt tgcgcccacc accaccaccc caccacccct ccttggtctc ccctggcccc
     2281 accctgcccc cacccccacc tctgctgcag gtgccagggc accctggggc ctcagccgct
     2341 aacgcccttt ctgagcagga cctaatcggc caggacctga actcacgcta cctgaatgcc
     2401 cagggtggcc ctgaggtggt gggagcaggg ggctcagccc ggcccctggc cttccagttc
     2461 caccagcaca accaccagca ccagcacacc caccagcaca cccaccagca cttcactccc
     2521 taccccccgg gcctgctgcc tccccacggc cacatgtttg agaaataccc aggaaagatg
     2581 gaaggccttt tccgacataa tccgtacatg gccttccctc ccgctgtgcc cgggctccct
     2641 ccgggtctcc caccagctgt ctcctttggc tccctgcagg gggccttcca gcccaagaac
     2701 acgaaccctg agctgccacc acgactgggg ccagtgctga gcgggctccc ccagaagggg
     2761 acacagatcc ctgatcattt ccggccacct ttgaggaaac caggaaagtg gtgtgccatg
     2821 catgttcgtg tggcttacat gatcctgaga caccaggaaa agatgaaggg tgattcccac
     2881 aagcttgact ttcggaacga cctcctaccc tgccttccgg gaccctatgg ggccctgccc
     2941 cctgggcagg agctctccca cccggcctcc ctcttcactg cgactggagc cgtccatgct
     3001 gcagccaatc ctttcacgac agctcctggg gcccatggac ccttcctgag ccccagtacc
     3061 cacattgatc cctttgggcg ccccacaagc ttcgcttcct tggcggctct ctccaacggg
     3121 gcctttggag gcctgggcag ccccacattc aactccagcg ccgtctttgc ccagaaagaa
     3181 agcccaggag ccccaccagc ctttgcctcc ccaccagacc catggggccg cctgcaccgc
     3241 agtcctcttg cctttcctgc ttgggtccga ccccctgaaa ctgcccggac accgggctca
     3301 gataaggagc gacctatgga gcgaagagag ccctctgtca ccaaggagga gaaggacagg
     3361 gacctccctt tctcacggcc tcagcttcga gtttctcctg ctactcctaa ggccagggct
     3421 ggcgaggaag gagtgcggcc agccaaagag tctgtgcggg taaaagaaga gcggaaagaa
     3481 gaggctgctg ctgcagctgc tgccgctgcc gccgccgctg ctgccgctgc cgctgctgcc
     3541 gccgccgccg ctgcaaccac tgggcctcaa ggtcttcatt tgcttttgga gaggccccgg
     3601 ccacccccct ttcttggccc tagtctgcct gatcgctgtg caggcttccc agagccaacc
     3661 tggttggcag ggcccccacg cctggccagg ccaccacgct tctatgaggc aggtgaggag
     3721 ttgactggac caggggccat ggctgctgcc cgcctctata gtctagaccc tgctcatcca
     3781 ttgctataca gccgtttggc tcctccacca ccacctactg caactccagg aacccctcac
     3841 cttctcagca agaccccacc aggagccctt ttaggagcac caccacctct tgtgcccgcc
     3901 ccccggccca gttccccacc tagggcccct ggcccagccc gggctgacag gtgaggagaa
     3961 gtgaggggca ggggcaaagc tccaccccct ttccccatac cttgtgacaa aagtcctagg
     4021 gctgaagttt ttaagccagg gttggaaggc aaaggtcaca atttcatggt catctctgaa
     4081 gtcatggacc taggtataga atccccaacc ccccgcaagt atctcgtgga ctgtggggtc
     4141 actgggagga caggggtcac aagcctctag agaggtgtgt gtgtgtgtgt gtgcgtgcat
     4201 gcgtgcgcgc acacatgagg ggttcatttc agaggttatg gctcatgacc taaggtgcac
     4261 caatgccccc tctaagggcc tctaggccct tggcctgcct ccccaagggc tcactaagcc
     4321 agaggccaaa gtgccccctc ccttttacct actacccaag ttctcatgcc ctcttagggc
     4381 tgaggaagag gaactaaagg aataggggtt ccatgtacat atttatcacc ccttccacaa
     4441 attccccaga ccttttgtac atttttacag gggtgcccct ctctataatc cccttcctgg
     4501 ttaattaaat cctcagactg gtgctgtgtt cctagcctct ggcctctctg taggggtagg
     4561 gtgtcccagg gcaagagcct ggagaggaca ggcagaatcc cagggcttga ccctgggtat
     4621 gtaggatcca gaaggaagta gaccaacagg gaaagggacc tagaatttaa gctagaagaa
     4681 agggcaattg tacctggctg tcagcccagg tctctccaga cttgttccta tcctgtgtgg
     4741 cccacagctc taaaaaggct cagcctttaa gcttcagatt ccacctctta atggctaagt
     4801 tcctaaccac caccccattt ccaagtgccc ccaggattcc tgggccctgt tccacagtaa
     4861 cctgtcccaa actatgggag ggagaggtgg ccagagaagg tcaccatgaa cacacaccaa
     4921 agaagggggt tggttcaggg ggtgggcaac acaggcagct tctttagcag cctcccagca
     4981 gcagccccag ccttcccaaa gcagcaggca cttccaggct ggggccctaa ctagaaggca
     5041 gggctcagtt taacaaaacc ataacgttga ctttttcccc agtggggctt attctgtaac
     5101 atgacttgcg aatatttata taaaaatgag tgttacaatg agacaccccc aa
//
