LOCUS       XM_017597634            3635 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus fatty acid hydroxylase domain
            containing 2 (Faxdc2), transcript variant X1, mRNA.
ACCESSION   XM_017597634
VERSION     XM_017597634.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017597634.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017597634.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3635
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3635
                     /gene="Faxdc2"
                     /note="fatty acid hydroxylase domain containing 2; Derived
                     by automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 36 ESTs, 6 long SRA reads, 4 Proteins, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 212 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:691221"
                     /db_xref="RGD:1586284"
     CDS             123..1373
                     /gene="Faxdc2"
                     /codon_start=1
                     /product="fatty acid hydroxylase domain-containing protein
                     2 isoform X1"
                     /protein_id="XP_017453123.1"
                     /db_xref="GeneID:691221"
                     /db_xref="RGD:1586284"
                     /translation="MSFQKKGILFPAHTDLNFFSSRARPEPVRSPVMRSPGPASRPTQ
                     AEPGDNKVSLQSYSDTATTKPRTTAGCTCGLLTGTLGNNPSAEKGHIWDSMRRTALIL
                     GLGLLLLAAFWNSITWYPQRFWGASGDFWQTRWETLLSTFEGNEWILYIIGVVLVPGL
                     CFWGFNGLLLMVDRTGKPTFISRYRIQLDKNEPVDPVKLRQSIRTVIFNQSVISFPML
                     VILYPFLKWTGDPCCRELPTFHWILVELVLFTLVQEILFYYSHRLFHHPKLFKKVHKK
                     HHEWTTPIGLISIYADPIEHVVSNMLPVMVGPLAMGSHLSSITVWLSLVLIVSSITHC
                     GYHLPFLPSPEFHDYHHLKFNQCYGVLGVMDHLHGTDVMFKQTKAYERHVILLGFTPL
                     SESIPDPPKKTGSALGPSGPLPHQ"
ORIGIN      
        1 tgcctaggaa gcacaaggcc ctgggttcgg tccccagctc cgaaaaaaaa gaaccaaaaa
       61 aaaaaaaaaa aagttcgagg ggagcagaat ctggcccatg ccctgtttct ctccttaagg
      121 acatgtcctt ccaaaagaaa ggcattctgt ttccagccca cacagaccta aactttttct
      181 catcacgtgc aaggccagag ccagtccgca gcccagtaat gcgatcacca gggccagcct
      241 ccagacccac ccaagctgag cccggtgaca acaaggttag cctgcagagc tacagcgaca
      301 cagcaaccac aaaacccaga accactgcag gctgcacttg tggtttgttg acagggacgc
      361 ttgggaacaa cccctctgca gagaaaggac atatctggga ctccatgagg aggacagctc
      421 tcatcctggg cttggggctg ctcttgttgg ctgccttctg gaactcaatc acatggtatc
      481 ctcagagatt ttggggtgct tctggcgact tttggcagac ccggtgggag acactgctgt
      541 ctacatttga aggcaacgag tggatcctgt acattatagg tgttgtcctc gtgccggggc
      601 tgtgcttctg gggcttcaat ggccttctac tgatggtgga cagaacagga aaacccacct
      661 tcatctcccg ctaccgcatc caacttgaca agaatgagcc agtagaccct gtgaagctgc
      721 gtcagtctat ccgcacagtt atcttcaacc agagcgtcat ctctttcccc atgctggtca
      781 tcctctatcc tttcttaaag tggacaggag acccctgctg tcgagagctg ccaaccttcc
      841 actggatcct ggtggagctg gtccttttca cccttgtgca ggaaatcttg ttctactact
      901 cacatcggct ctttcaccac ccaaagttgt tcaagaaagt tcacaagaaa catcatgaat
      961 ggacaacacc cattggtttg atctcaatat acgccgaccc tatagaacat gtggtttcca
     1021 acatgttgcc agttatggtg ggtcctctag caatgggctc tcacttgtct tctattaccg
     1081 tgtggttatc cctggttctc atcgtcagct cgatcaccca ctgtggctac cacttaccct
     1141 tcctgccttc acctgagttc catgactacc accatctcaa gttcaaccag tgctatgggg
     1201 tgctgggtgt gatggaccac ctgcatggga ctgatgttat gtttaagcag accaaggctt
     1261 atgagagaca tgtcattctg ctgggcttca ccccactctc agaaagcatc cctgatcctc
     1321 caaagaaaac aggaagtgca cttggaccat ccggcccact ccctcatcag tagacagcct
     1381 ggggccatgc tgcccttaaa aatttgcttc ccttggccac catactctaa ggttatgata
     1441 ggatccaggc ttcccccaaa ttacttctca tgtcacttag gatttagcga agaactattt
     1501 aagctggagg ctagccagat gagacaaatc actgagtcag ggtgaatccc ctagtcctct
     1561 gctccactcc catacaactc ccctgtggcc taggcaggat acagagaatg gggtgctgtt
     1621 ggattgactc caaaagcttt tctcatactc aaagccaagg tattctggaa tagtcacagg
     1681 tcagatgcta gatgtggtcc ctgcttccta tcaagagaac ttgacttact tttgctctcc
     1741 acagacacaa gtcccttaga agaaacaatg acaaactaca gcagcttttt attaggacgt
     1801 gcaccccaac tcctgtgcaa tctggggctc tggtccagga ccattcatgt tagggaggat
     1861 tactagatta tttagagatt atttagagag tcagttactc tctaaatcca aaccagcctt
     1921 ctaccaacaa aacattacca aagggcaggc catctcttcc agatgtctca gggagaacta
     1981 taggaggaga gtttctccag aaaaaacgtt accaggcccc accctggcag cacatggtta
     2041 agaatcctga ggtcttagga acttggcatt taggttggat ctgggaggct gccaccatta
     2101 ccatctgtta agttccagca caactgtgtt gatctaacat ttccagttcg agatgagtca
     2161 aaaaaactcc ctcctgtatc ttctataaaa taacccagct gggaacagct ttgcactgca
     2221 cttccagctg cctgggcttt aggcccagtt caaagccggc ctggacaaca gagcaaaacc
     2281 tcaagatctg atggaccagc tggcaactga ggaccttgca gcctcccctc accttagact
     2341 ccttcaagtg cgagcctacc tgcctcaatc ccaccatcat cactggccgg tagctattcc
     2401 cttcttcacg agcatcagaa atgctctctg cagcagtatc aagtcagaca aacaggtcct
     2461 gtgcagtact gtcctggtac atggcccacc acaaggcatg aatattggtg actaaggcct
     2521 taatgtctcc acaaaacaaa caaaagcagc atgtaataaa gtctgtttaa ctccagtaga
     2581 ttgtgttgtc actggcctcc cccgaacact tggggaacta agggcacaca actaaggagc
     2641 caacggacac agctgctcct aatgaccatg actgaggtgg gtgtgcttca tcgggcaact
     2701 tacagaatag aggacactgg tagtgaccat cctactacct gacagtaaga aactagcaaa
     2761 gtgtcaggtc ttggaggaaa ttaaacactc tacataagga attcttgcat acattgtggg
     2821 gaatgaaaac ccaacttcac cttttctcaa gcttcacaac atgcagagtc aacgagggtc
     2881 aaggttggcc aagcacctga atgcactagc agtaccaaga gcctgcctta ggcagatgcc
     2941 caggagccaa aagcagtctt ttcttgagag tgtattgtag ctatgctcac gtacagcgtg
     3001 ggctcctcca tctgggggga cacaccaagt ttctctctct cacacccaac agcagtgtcc
     3061 cagatgggag accagccagt gttttgcctt ttcaagtttt tatttttata catttttttg
     3121 tattaaaaag aaaagcataa taattaccac caattacaaa ggactagagc aggaccagaa
     3181 taatgaatga atcacttcag cctgggaagc agacactctc aataatatta atgttataat
     3241 acaagctcat tcaagtattt tacatttttt tgtcctgttg aatgtgatat cctagaacat
     3301 ggtaaagaca atgtacgagc gtaaggtgga accttctctg caaagcccat gagagttttc
     3361 ctttcctgtg agaactgggc tcaaagtttt cttctgcctc tgccatcacc atggctggag
     3421 gagagggtgg gagctgggga gaacctaggg gccctttaac tagagagact ctggggtcct
     3481 atccagggga acaaccaagc ctctagcact ccccactatc agccttgtct tcatgccctt
     3541 tccctcacgt ccagaccttc caagcagctt gctttctttt gtaaatatca tcaaaaagga
     3601 gtgggacgga gctacagaac aaaaacattt aacaa
//
