LOCUS       NM_001012739             550 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus FAU ubiquitin like and ribosomal protein S30
            fusion (Fau), transcript variant 1, mRNA.
ACCESSION   NM_001012739 XM_342000
VERSION     NM_001012739.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Anger,A.M., Armache,J.P., Berninghausen,O., Habeck,M., Subklewe,M.,
            Wilson,D.N. and Beckmann,R.
  TITLE     Structures of the human and Drosophila 80S ribosome
  JOURNAL   Nature 497 (7447), 80-85 (2013)
   PUBMED   23636399
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 550)
  AUTHORS   O'Donohue,M.F., Choesmel,V., Faubladier,M., Fichant,G. and
            Gleizes,P.E.
  TITLE     Functional dichotomy of ribosomal proteins during the synthesis of
            mammalian 40S ribosomal subunits
  JOURNAL   J Cell Biol 190 (5), 853-866 (2010)
   PUBMED   20819938
REFERENCE   4  (bases 1 to 550)
  AUTHORS   Yu,Y., Ji,H., Doudna,J.A. and Leary,J.A.
  TITLE     Mass spectrometric analysis of the human 40S ribosomal subunit:
            native and HCV IRES-bound complexes
  JOURNAL   Protein Sci 14 (6), 1438-1446 (2005)
   PUBMED   15883184
REFERENCE   5  (bases 1 to 550)
  AUTHORS   Tollin,M., Bergman,P., Svenberg,T., Jornvall,H., Gudmundsson,G.H.
            and Agerberth,B.
  TITLE     Antimicrobial peptides in the first line defence of human colon
            mucosa
  JOURNAL   Peptides 24 (4), 523-530 (2003)
   PUBMED   12860195
REFERENCE   6  (bases 1 to 550)
  AUTHORS   Hiemstra,P.S., van den Barselaar,M.T., Roest,M., Nibbering,P.H. and
            van Furth,R.
  TITLE     Ubiquicidin, a novel murine microbicidal protein present in the
            cytosolic fraction of macrophages
  JOURNAL   J Leukoc Biol 66 (3), 423-428 (1999)
   PUBMED   10496312
REFERENCE   7  (bases 1 to 550)
  AUTHORS   Vladimirov,S.N., Ivanov,A.V., Karpova,G.G., Musolyamov,A.K.,
            Egorov,T.A., Thiede,B., Wittmann-Liebold,B. and Otto,A.
  TITLE     Characterization of the human small-ribosomal-subunit proteins by
            N-terminal and internal sequencing, and mass spectrometry
  JOURNAL   Eur J Biochem 239 (1), 144-149 (1996)
   PUBMED   8706699
REFERENCE   8  (bases 1 to 550)
  AUTHORS   Olvera,J. and Wool,I.G.
  TITLE     The carboxyl extension of a ubiquitin-like protein is rat ribosomal
            protein S30
  JOURNAL   J Biol Chem 268 (24), 17967-17974 (1993)
   PUBMED   8394356
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            BC091402.1.
            
            On Apr 20, 2005 this sequence version replaced XM_342000.2.
            
            Transcript Variant: This variant (1) represents the longest
            transcript. Variants 1-3 encode the same protein.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC091402.1, FQ146426.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..550
                     /gene="Fau"
                     /note="FAU ubiquitin like and ribosomal protein S30
                     fusion"
                     /db_xref="GeneID:29752"
                     /db_xref="RGD:61938"
     exon            1..60
                     /gene="Fau"
                     /inference="alignment:Splign:2.1.0"
     exon            61..143
                     /gene="Fau"
                     /inference="alignment:Splign:2.1.0"
     CDS             69..470
                     /gene="Fau"
                     /note="40S ribosomal protein S30; ubiquitin-like protein
                     FUBI; Finkel-Biskis-Reilly murine sarcoma
                     virusubiquitously expressed; Finkel-Biskis-Reilly murine
                     sarcoma virus (FBR-MuSV) ubiquitously expressed (fox
                     derived) protein"
                     /codon_start=1
                     /product="40S ribosomal protein S30 precursor"
                     /protein_id="NP_001012757.1"
                     /db_xref="GeneID:29752"
                     /db_xref="RGD:61938"
                     /translation="MQLFVRAQELHTLEVTGQETVAQIKAHVASLEGIAPEDQVVLLA
                     GSPLEDEATLGQCGVEALTTLEVAGRMLGGKVHGSLARAGKVRGQTPKVAKQEKKKKK
                     TGRAKRRMQYNRRFVNVVPTFGKKKGPNANS"
     exon            144..288
                     /gene="Fau"
                     /inference="alignment:Splign:2.1.0"
     exon            289..344
                     /gene="Fau"
                     /inference="alignment:Splign:2.1.0"
     exon            345..516
                     /gene="Fau"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgctccttcc tctttcttga ctccatcttc gcggttgcag cagcggcgtc cgcgggtaag
       61 tagccaacat gcagctcttt gtccgcgccc aggaactaca caccctcgag gtgaccggcc
      121 aggagacggt cgcccagatc aaagctcatg tggcctcact ggaaggcatt gcccccgaag
      181 atcaagtcgt gcttctggca ggctcgccgc tggaggatga ggccacccta ggccagtgtg
      241 gtgtagaggc cctgaccact ctggaggtag ctggccgcat gctgggaggt aaagttcatg
      301 gttctctggc tcgtgctggg aaagtgagag gtcagactcc caaggtggcc aaacaggaaa
      361 agaagaagaa gaagactggt cgggccaaga ggcgaatgca gtacaaccga cgctttgtca
      421 atgttgtgcc cacctttggc aagaagaagg gccccaatgc taattcctaa gtcctgttgt
      481 gatcctgcca cactaataaa gccactttgc ccagaaaaaa aaaaaaaaaa aaaaaaaaaa
      541 aaaaaaaaaa
//
