LOCUS       NM_001399367            3137 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus FAST kinase domains 5 (Fastkd5), transcript
            variant 1, mRNA; nuclear gene for mitochondrial product.
ACCESSION   NM_001399367 XM_039106571
VERSION     NM_001399367.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Antonicka,H. and Shoubridge,E.A.
  TITLE     Mitochondrial RNA Granules Are Centers for Posttranscriptional RNA
            Processing and Ribosome Biogenesis
  JOURNAL   Cell Rep 10 (6), 920-932 (2015)
   PUBMED   25683715
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   3  (bases 1 to 3137)
  AUTHORS   Simarro,M., Gimenez-Cassina,A., Kedersha,N., Lazaro,J.B.,
            Adelmant,G.O., Marto,J.A., Rhee,K., Tisdale,S., Danial,N.,
            Benarafa,C., Orduna,A. and Anderson,P.
  TITLE     Fast kinase domain-containing protein 3 is a mitochondrial protein
            essential for cellular respiration
  JOURNAL   Biochem Biophys Res Commun 401 (3), 440-446 (2010)
   PUBMED   20869947
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jan 6, 2022 this sequence version replaced XM_039106571.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR21887623.995370.1,
                                           SRR21887623.995377.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMN12840108 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-87                JAXUCZ010000003.1  138300717-138300803 c
            88-234              JAXUCZ010000003.1  138299471-138299617 c
            235-3137            JAXUCZ010000003.1  138283315-138286217 c
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q36"
     gene            1..3137
                     /gene="Fastkd5"
                     /gene_synonym="AABR07053741.1; Fastkd5-ps1; RGD1563839"
                     /note="FAST kinase domains 5"
                     /db_xref="GeneID:366192"
                     /db_xref="RGD:1563839"
     exon            1..87
                     /gene="Fastkd5"
                     /gene_synonym="AABR07053741.1; Fastkd5-ps1; RGD1563839"
                     /inference="alignment:Splign:2.1.0"
     exon            88..234
                     /gene="Fastkd5"
                     /gene_synonym="AABR07053741.1; Fastkd5-ps1; RGD1563839"
                     /inference="alignment:Splign:2.1.0"
     exon            235..3137
                     /gene="Fastkd5"
                     /gene_synonym="AABR07053741.1; Fastkd5-ps1; RGD1563839"
                     /inference="alignment:Splign:2.1.0"
     CDS             432..2726
                     /gene="Fastkd5"
                     /gene_synonym="AABR07053741.1; Fastkd5-ps1; RGD1563839"
                     /note="FAST kinase domains 5, pseudogene 1"
                     /codon_start=1
                     /product="FAST kinase domain-containing protein 5,
                     mitochondrial"
                     /protein_id="NP_001386296.1"
                     /db_xref="GeneID:366192"
                     /db_xref="RGD:1563839"
                     /translation="MSATLKLLKLLKYKASCNPSAYHAAQSMAYWPMENIAQHGGQNL
                     PKHNSSCHLARKVKNIGDTTLSQRAFTTSSAHLGLEFNKASALKASALHPDSPSARRG
                     EEDVEVFDSFEGTRVFLKLRPEYQLHSYNRSETRQPLSASEGELILHKVTFYEDKLQP
                     EVITNYFCKLSSLPAEQSSVLLCSNSFALLCHQSVRNIQLFNTSDLVSILKAFVDLRI
                     PFSASMLDVYETRFCHQVWGMNLDQLLLVADLWRNLGRRVPRFLKIFFSYLNLHWREL
                     SLSQLIHLIYIIGENRQVPQDLMQKLESLILKYIDSVNLEEVGTICLGFFKSSTSLSE
                     FVMRKIGDLACANMQDVRSHTLVHILKMFRFTHVDHVNFMRQFGEIAPQRIPSLGVQG
                     VMHLTLACSALRILDERVMNAVAASLPPRVAHCRSKDVAKILWSFGTLNYKPPNTEEF
                     YSSLINEIHRKMPEFNQYPEHLLTCLIGLAFSEYFPAEFINVALSPGFVKLAQMRSKF
                     ELTKELFTLDGTVAIECPDYKGNRLNSHLQQEASANLWSLANKDMRSKPEFLETLYLL
                     ETMLGGPQYIKHHMILPHTRSSDLEVQLDANMKPLPFNSEATPTEDVAQLRLKQVGVS
                     LTDDLMNQLLKGKAKRYFQGETELETGQLSIELRKKTTVPLVDSDCNGADRLGDTGIA
                     GLCPLTHMQTPLVKLAIQFTNKNQYCYGSRDLLGLHNMKRRQLVQIGYRVVELPHWEW
                     LPLLKRTRLEKLAYLHEKVFTSAL"
ORIGIN      
        1 gtggagcggt tgatgcggga gtctgtatat tgacttacct ggtgcggcca gggactggag
       61 ttagggcgct accctcgtgg gtttcagtgc tggaggaggc cagaagaggg cgctggatct
      121 cctgggactt gaattaaagt tgattgtgag ccatagtgtg ggcattgggg atcaagcccc
      181 catccactgg aagagcagcc aggactctta aacattgagc agtttctcca gccagtagaa
      241 gccactcatt tttcatctac ccttttttca gtatctggca ccaatactgg cccatcattt
      301 gtggcccatg gctcttgtgg tatgccgaag agttacaggc agtttctgtg gaacatctct
      361 aatgaagcac catataaaca agaacgtgtg acttttctct gactgccaaa aagatcagca
      421 cagactccag aatgtcagcc actctcaagc tattaaaact tttaaaatac aaagcatctt
      481 gtaatccttc tgcttaccat gcagcccaaa gcatggcata ttggcctatg gaaaacatcg
      541 cacagcatgg gggacagaat ctccctaaac ataatagctc ctgccatctt gccagaaaag
      601 ttaagaacat tggtgatacc accctgtctc agagagcctt cacaaccagc agtgcccacc
      661 tgggtttgga attcaacaaa gcttctgcgc tcaaggccag tgcattgcat ccagactcac
      721 ccagtgccag aagaggcgaa gaggatgtag aggtctttga ttccttcgaa ggaacccgag
      781 ttttcttaaa gctaaggcca gagtaccagc ttcacagcta taacagaagt gagactcgcc
      841 aacccttatc tgcctcagaa ggtgaactaa ttttgcacaa agtcacattt tatgaagata
      901 aactccagcc agaagtcata actaattatt tttgtaagct cagctctttg ccagcagaac
      961 agagttccgt tttgctgtgc agtaacagct ttgctttgct ctgtcatcag agtgtgagaa
     1021 acatacagct ctttaacacc tcagacctgg tcagtattct gaaagccttt gtcgacctaa
     1081 gaatcccctt ctccgcctcg atgctagatg tgtatgaaac caggttttgc catcaggtat
     1141 gggggatgaa cctggatcag cttctcctcg tggctgatct ttggcggaac ttaggccgca
     1201 gagtgcctcg atttttaaaa atttttttta gctaccttaa tttgcactgg agagagctat
     1261 ctttgtctca gctaattcac ttaatttata ttataggtga aaatcgtcaa gtaccacagg
     1321 acctgatgca aaaactagaa tcactgatcc ttaagtatat agattcagtc aatttagagg
     1381 aagttggtac catctgtttg ggttttttta aatcaagtac tagcctctct gaatttgtca
     1441 tgcggaaaat tggagatcta gcttgtgcta atatgcagga tgtgcgtagc cacaccttag
     1501 ttcatattct taaaatgttc cgcttcactc acgtagatca tgtaaatttc atgaggcagt
     1561 ttggagaaat tgctcctcag agaattcctt ccttgggggt tcagggtgtt atgcacctta
     1621 cccttgcctg ctcagcctta cgtatcctgg atgaaagagt aatgaatgca gtagctgcct
     1681 ctttgcctcc aagggtagca cactgtcgaa gtaaagatgt tgccaaaatt ctgtggtcgt
     1741 ttggaactct gaattataag ccaccgaaca cagaagaatt ttattccagt ctgataaatg
     1801 aaatccacag aaagatgcct gaattcaacc agtacccaga gcaccttctc acctgcctga
     1861 ttggcttggc attttctgag tactttccag ctgaattcat aaatgttgct ctgagcccag
     1921 ggtttgtcaa gttagctcaa atgagaagta agtttgaact cactaaggaa ctgtttactc
     1981 ttgatggtac agttgccatt gaatgtccag attacaaggg caaccgcctt aattctcacc
     2041 ttcagcaaga agcatctgca aatctgtgga gtttagcaaa caaggacatg agatcaaagc
     2101 ctgaattcct agaaactctc tacttacttg agaccatgtt gggtggccca cagtacatca
     2161 agcaccatat gattttacct catactcgat cttctgactt agaggttcag cttgatgcta
     2221 acatgaagcc attaccattt aatagtgaag caacaccaac tgaagatgta gcccaattac
     2281 gacttaagca agtgggagtc agccttacag atgatttgat gaatcagttg ctaaagggaa
     2341 aagccaagag gtatttccag ggggaaactg agttagagac tggccagcta tccatcgagt
     2401 taagaaagaa gacaactgta cccttggtgg actctgattg caatggagca gatagattgg
     2461 gggatacggg aatagctggc ttgtgccctc tcacccacat gcagacccca ctagtaaagc
     2521 tagctatcca gtttacaaac aagaaccaat actgctatgg ttccagggat cttcttggat
     2581 tgcacaatat gaagagaagg cagctggttc aaattgggta ccgtgtggta gaattacccc
     2641 actgggaatg gcttccatta ctgaaaagaa ctcgcttaga gaagctagca tacctccatg
     2701 agaaagtgtt cacctctgct ctctgaaggg cactcatggg catttatgct cataaaagga
     2761 acaggtgcat accctatatc tgtaggttaa ggatccttaa ccagaaaatc aaagtcaaat
     2821 gtcctaaaat ctggaactga gtactgatct cagatcaggg acattcaagt ggtagtctat
     2881 gcagataccc tggacttcaa atctcaaaca cctctagtct caagtatttg atacagggat
     2941 gctcaagctg tctttcaagt aattctaaaa gccagagtgc aggtgggtaa taaaaccatc
     3001 tgttgagtag ccatgggtgt actcttctgt tgcagagcca gtagcaattg tatgttactg
     3061 caggttgtgt tatatactct agttgtatgt tttgctcaga ataaataagc ttcttcaaaa
     3121 tgaggttgat ccacaaa
//
