LOCUS       NM_001191738            3555 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus FAST kinase domains 1 (Fastkd1), mRNA; nuclear
            gene for mitochondrial product.
ACCESSION   NM_001191738 XM_230003
VERSION     NM_001191738.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3555)
  AUTHORS   Boehm,E., Zaganelli,S., Maundrell,K., Jourdain,A.A., Thore,S. and
            Martinou,J.C.
  TITLE     FASTKD1 and FASTKD4 have opposite effects on expression of specific
            mitochondrial RNAs, depending upon their endonuclease-like RAP
            domain
  JOURNAL   Nucleic Acids Res 45 (10), 6135-6146 (2017)
   PUBMED   28335001
REFERENCE   2  (bases 1 to 3555)
  AUTHORS   Han,S., Udeshi,N.D., Deerinck,T.J., Svinkina,T., Ellisman,M.H.,
            Carr,S.A. and Ting,A.Y.
  TITLE     Proximity Biotinylation as a Method for Mapping Proteins Associated
            with mtDNA in Living Cells
  JOURNAL   Cell Chem Biol 24 (3), 404-414 (2017)
   PUBMED   28238724
REFERENCE   3  (bases 1 to 3555)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 3555)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   5  (bases 1 to 3555)
  AUTHORS   Simarro,M., Gimenez-Cassina,A., Kedersha,N., Lazaro,J.B.,
            Adelmant,G.O., Marto,J.A., Rhee,K., Tisdale,S., Danial,N.,
            Benarafa,C., Orduna,A. and Anderson,P.
  TITLE     Fast kinase domain-containing protein 3 is a mitochondrial protein
            essential for cellular respiration
  JOURNAL   Biochem Biophys Res Commun 401 (3), 440-446 (2010)
   PUBMED   20869947
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000003.1.
            
            On Jul 17, 2010 this sequence version replaced XM_230003.5.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.14063.1,
                                           SRR26643293.16960.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-1339              JAXUCZ010000003.1  74882029-74883367   c
            1340-1408           JAXUCZ010000003.1  74881569-74881637   c
            1409-1534           JAXUCZ010000003.1  74878534-74878659   c
            1535-1933           JAXUCZ010000003.1  74877497-74877895   c
            1934-2044           JAXUCZ010000003.1  74875563-74875673   c
            2045-2176           JAXUCZ010000003.1  74874131-74874262   c
            2177-2663           JAXUCZ010000003.1  74872145-74872631   c
            2664-2778           JAXUCZ010000003.1  74870035-74870149   c
            2779-2907           JAXUCZ010000003.1  74866389-74866517   c
            2908-3039           JAXUCZ010000003.1  74865899-74866030   c
            3040-3153           JAXUCZ010000003.1  74865285-74865398   c
            3154-3292           JAXUCZ010000003.1  74862143-74862281   c
            3293-3407           JAXUCZ010000003.1  74860363-74860477   c
            3408-3555           JAXUCZ010000003.1  74857540-74857687   c
FEATURES             Location/Qualifiers
     source          1..3555
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="3"
                     /map="3q21"
     gene            1..3555
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /note="FAST kinase domains 1"
                     /db_xref="GeneID:311112"
                     /db_xref="RGD:1563531"
     exon            1..1339
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     CDS             1005..3503
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /codon_start=1
                     /product="FAST kinase domain-containing protein 1,
                     mitochondrial"
                     /protein_id="NP_001178667.1"
                     /db_xref="GeneID:311112"
                     /db_xref="RGD:1563531"
                     /translation="MFRLRGVSLLSWRAFPFRPFSCESLIVQMQNCADEEQVFDLIER
                     NKATLSEQQVGCAFNVLWQFQKQKTILEKNVERVRNHPQFLSLCSVTTDHIPAMSDVT
                     LVDVLYSIKQFAVESHHPLIEALVTEGWRRLERFDINVLSIFSTCLADQHLYFSPLMG
                     KIADIVNRKLEAIQDLRALSVLMVSISSLISPCFQERLLTRAELLFDTVDSSKVNIAR
                     RILLFLRNVKHSHYPLLERCNQVFIRNVSHLDLESISRILSLYQSLQFHSFEFIEVAR
                     GRLAELSLPSDHPESFVRLFAALGPVARPEIRKQLKSTILLLSEELSSQQALTVLGAM
                     EDMESRDSHLIKKIVSVLYRHLDNCKSVELLKIIQALTFLHFQSKELFMKLREVLLSR
                     LEASVTPSEVSVLVSALSMLPYPHLNETALSRTETVLPQCDFRELSDLVVCLMRWIQN
                     DHLCSASTAGKQLDLLQKLDHWGHRRLQQSTSLDLLWEELKSVKGEWLHESLVEESIT
                     ALQRFMDEIDHSNVAKIASFLSKTNYLSTPLLDRIASVVVEQIKKIHPFSVLAIILPF
                     SILNYDPPQKDEFFGACVQCCNSYLGTLDPGTLVFLGFSMATLEYFPEDLLKKMFNIE
                     FLARLDSQLEILPSSLSARIQFRLMELNRAVCLECPELQVPWFHDRFCQRQFNKDTGV
                     MNGAQQQIYKMLAEVLGGHRYVKPSTLSPYYHTVDFECILDKRKKPLPYESHSVTPGK
                     SPGVHGDSNTSRAEPRLPPEAERIAIEFLDVRAFCSNILHLKGKSAMKKRHLEILGYR
                     VIQVPYFEWNSMAMSTKDTRMDYLREQIFGAGRS"
     exon            1340..1408
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            1409..1534
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            1535..1933
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            1934..2044
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            2045..2176
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            2177..2663
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            2664..2778
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            2779..2907
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            2908..3039
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            3040..3153
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            3154..3292
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            3293..3407
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
     exon            3408..3555
                     /gene="Fastkd1"
                     /gene_synonym="RGD1563531"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgcttttcc ttccgcactg ggacaagctc tgttaccggg agaagtttct ccaggaaagg
       61 ctaaataccc ttggacgcta ctggtgagcg agagacacca gcttaccgct gcggctgcca
      121 ggcctcggat gatccctgcc ttctgagccg tccagagcag ccccgtaggc cgtagcgggc
      181 gtgggatgga ctcgccggtt ggtcagtggc tctgccttcc gtagcccgca gggttccgcc
      241 cgggacgcgc ggtttagttt agtagctgcg gtctccttac ctgtttgggt tctcagcacc
      301 gcagagcacc gttgccatct aggccagtgg aggccagttc tcccgccggc caggtgctcg
      361 ggataccagt catctgtgaa ccgtggggct gtgcgacact caagccagct taccacactt
      421 ccaactgtgt cacactccca aggcggctcc tttggtcaca aggtttcccc aaggtcacct
      481 ttttgtaatt ctcatagatt gggctacagg atgagacata tctccacaaa gaagcaagca
      541 gatactttta aaaataaaca aatcaatttt gagttcgttt tctaatgccg cttttgtggt
      601 cagagttgaa aagaaacatt ttaaaattag gttcaggaag agactctttc ccccgagccc
      661 ccggatgttt tatttcggat caaatctagc tggttcagac caagaacagt ctgtagttca
      721 aacaaaaaga aacatcctcg ttacttgaaa tttgaatttg ggggatcaat ttgatagtaa
      781 tgagacaaga gtaaccaagg ctaaccagtt gttttacaga ttctattgaa atggatttag
      841 aactgccgag atggaaaaaa aacacgtgaa tgaaggccag tttttatact gtcacagcac
      901 atctgacttc tagcacagat gatctctctc ttttttaaac caaagaaaaa ttgtgctaag
      961 gaaggaaaag aaacctctat tttagagaac tgtccgttat aaacatgttc cgtctacgag
     1021 gcgtctctct actctcttgg agagcgtttc cgttccgccc cttcagttgt gagtcattaa
     1081 ttgttcagat gcagaactgt gcagatgaag aacaagtgtt tgatcttatc gagagaaata
     1141 aggccacgct ctcagaacag caagtgggct gtgcatttaa cgtactttgg cagtttcaga
     1201 agcagaagac catcttggag aaaaatgttg agcgcgttag aaaccatcct cagtttctta
     1261 gtctttgcag tgttacgaca gatcacatcc cagcaatgag tgatgtcacc ctggtggatg
     1321 tgttatacag cataaaacag tttgcagttg aatcccatca cccactaatt gaggccctgg
     1381 tcacagaagg gtggcgaaga ctcgaaaggt tcgatattaa tgtgctgtca atattttcca
     1441 cttgcctggc cgatcagcac ttgtatttta gtccattaat gggaaaaata gctgacattg
     1501 tgaataggaa actggaagcc atacaggact taagggcctt gtctgtcttg atggtcagca
     1561 tttcttcttt aatatcaccg tgctttcaag aacgactgct gaccagagca gaacttcttt
     1621 ttgacactgt agattcttcc aaggtcaaca ttgcaaggag gatactactg ttccttcgga
     1681 atgtcaagca cagtcactac ccactgttag agaggtgcaa tcaagtgttc atcagaaatg
     1741 tgagccatct tgacttggag tccatcagtc gaatccttag tctgtatcag tctctacagt
     1801 tccacagctt tgaatttatc gaggtggctc gagggaggct ggctgagctg agcctccctt
     1861 ctgaccatcc tgaaagcttc gtcagactgt ttgctgcgct ggggccggtg gccaggcctg
     1921 agataaggaa acagcttaaa tcaactatac tgctgctgtc agaggagctg agcagccagc
     1981 aagcgctgac tgtgttggga gcaatggaag acatggaaag cagagactca cacttgatta
     2041 aaaagatcgt gtctgtcctg tacagacatt tggataactg taaatcagta gagctattga
     2101 agataataca agcgctgaca ttcctacact tccaaagtaa ggagcttttt atgaaactca
     2161 gagaagtact tctcagtcgt ttggaagcta gtgtcacacc cagcgaggtt tccgttctgg
     2221 tctctgctct ctccatgctt ccatatcctc acctcaacga aacagccctg tcccgaactg
     2281 agacagtttt accacagtgc gacttcaggg aactgagtga tttggtagtg tgtctcatgc
     2341 gctggattca gaatgatcac ctgtgctcgg ctagcactgc tgggaagcaa ctggacctcc
     2401 ttcaaaaact ggatcactgg ggccatcgcc ggctgcagca gagcaccagc ttggatctac
     2461 tgtgggagga gcttaagtct gtgaagggag agtggcttca tgagtccctg gttgaagaat
     2521 caatcaccgc tttgcagcgc tttatggatg agatcgatca cagcaatgtc gccaagatcg
     2581 catctttcct ttccaaaact aactacctca gcactccgct gctcgacagg atagcttcgg
     2641 tggtcgttga gcagatcaag aagatccatc ccttttcagt ccttgctatt attctcccat
     2701 tcagcatttt gaactatgat ccacctcaaa aggatgaatt ttttggagcg tgtgtccagt
     2761 gctgtaattc ttacttaggt acattggatc ctgggacatt agtgtttctt ggtttctcta
     2821 tggctacact tgaatatttt ccagaagatc tgctaaagaa aatgtttaac atcgagttcc
     2881 tagccagatt agattcccag cttgaaattt taccttcaag tctcagtgca aggatccagt
     2941 tccgccttat ggagttaaat agagccgtct gcttggagtg ccccgagctg caggtcccgt
     3001 ggtttcatga ccgcttttgt cagcgacagt ttaacaaaga taccggtgtt atgaatggag
     3061 cgcaacaaca gatctataaa atgttagcag aggtcctggg aggacaccga tatgtaaagc
     3121 cttcgactct ttcaccatat taccacacag tggattttga atgcattttg gataaacgaa
     3181 aaaagcccct gccttatgaa agccacagcg taactccggg aaaatcccca ggagtacacg
     3241 gggattcaaa tacttcaaga gctgagccaa ggcttccacc agaagctgag aggattgcta
     3301 tagaattttt ggatgtaaga gccttttgtt caaacattct tcacttaaaa ggaaaatctg
     3361 ctatgaaaaa gcggcatttg gaaatcttgg gctatcgtgt tattcaggtc ccctactttg
     3421 aatggaactc catggcaatg tcaacgaagg atacacggat ggactacctg agagaacaga
     3481 tatttggagc aggcagatca tgactgtagt tttttttttt tccctccatc tttattaaat
     3541 tgggtatttc ttatt
//
