LOCUS       XM_039108897            4101 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus fatty acyl CoA reductase 2 (Far2),
            transcript variant X4, mRNA.
ACCESSION   XM_039108897
VERSION     XM_039108897.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4101
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4101
                     /gene="Far2"
                     /note="fatty acyl CoA reductase 2; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 5
                     ESTs, 9 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 9 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:500368"
                     /db_xref="RGD:1565966"
     CDS             953..2500
                     /gene="Far2"
                     /codon_start=1
                     /product="fatty acyl-CoA reductase 2"
                     /protein_id="XP_038964825.1"
                     /db_xref="GeneID:500368"
                     /db_xref="RGD:1565966"
                     /translation="MSMIAAFYSNKSILITGATGFLGKVLMEKLFRTSPHLKVIYILV
                     RPKSGQTLQERVFQILNSKLFERVKEVCPNVHEKIRPISADLNQRDFAISKEDMQELL
                     SCTNIVFHCAATVRFDAHLREAVQLNVTATQQLLLMASEMPKLEAFIHISTAFSNCNL
                     SHIDEVIYPCPVEPRKIIDSMEWLDDSIIEEITPKLIGDRPNTYTYTKALGEVVVQQE
                     SGNLNVAIVRPSIVGATWQEPFPGWVDNLNGPSGLIIATGKGFLRSIKATPMAVADLI
                     PVDTVVNLTIAVGWYTAVHRPKSTLIYHSTSGNLNPCNWYEMGLQVLATVEKIPFESA
                     FRRPNADFTTNNFTTQYWNTVSHWAPAIIYDFYLRLTGRKPRMLKLMNRLLKTISMLE
                     YFINHSWEWSTNNTEMLLSELSPEDQRVFNFDVRQLNWLEYIENYVLGVKKYLLKEDL
                     AGIPKAKQHLKRLRNIHYLFNTALFLIIWRLLIARSQMARNIWFFIVSFCYKFISYFR
                     ASSTLKV"
ORIGIN      
        1 gtacagcctc ctccaagact cttccaacta gttaggagtt ggaagatcta tgcaagtttt
       61 caccaagccg acttctgata actccagagc cctggagttc tttcaacacc atctcccggg
      121 gtttggactc taactgacct ttgttaccta tttagctctc aacagatctc tatctcgttt
      181 gtgactgaac taataacact gatggaacat ggaggcatct aagtttattt aaggggcgag
      241 gcccattaac tatgcaacag ttttatggca gttaacggtg gggaatattc aacaaaatga
      301 aagaggaaat ggcaacaaag aaaatgtcag aataaacact ctggctcctt cctggacacc
      361 cgcttctgca tttataaaca aatgcaccct gagctccaca gtgagcactg gaagaggttt
      421 ctttctgccc catgagaaca cagacagcta aaggcacctc tccaaagcaa gccctcagca
      481 ggcacctcgt ccttggactc cggagccttt gggactctga gcactattac atttatgata
      541 tctgtgagtg tttgaaaaga gatttctctt taaattgtgg ctaaacttct tgcttatttt
      601 ctgagacaag ctcaaacggt ttttaattct tatacttcta gcgatgcgag ctttcgcctt
      661 aacatttgta gcgtggcagc aaagtcggcg acctcacagc acattgacct taaggcagtt
      721 cctgtagcag tgtcagagtc acagcaaatt gagtgaaaag gacagaaagt tcctacattc
      781 aggttggggg agatggatca gtgaacagtg cttgctaccc aaggtggaga gcctgcgctt
      841 gtgacccagc acacacacag aaagccaggc acggtggcat atatctgcaa ttccagagct
      901 gtggaagcag aggactcttt tcccagaacc gtacaagaag aacagaggaa tcatgtccat
      961 gatcgccgct ttctacagca acaagtctat cctcatcaca ggggccacag gcttcctggg
     1021 caaggtgctc atggagaagt tattccgtac cagcccccac ttgaaagtca tttacatcct
     1081 cgtgagaccc aagtctggac agacactgca ggagagggtt ttccagatcc tcaacagtaa
     1141 gctgttcgag agagtcaagg aagtctgtcc aaatgtgcac gagaagatca gacccatctc
     1201 tgcagacctc aaccagcgtg acttcgccat cagcaaggaa gatatgcaag aacttctgtc
     1261 ctgcaccaac atcgtcttcc actgtgcagc cacagtgcgc tttgatgcac atctgagaga
     1321 agctgtgcag ctgaacgtca ccgccaccca gcagctcctg ctcatggcca gcgagatgcc
     1381 aaagctggaa gccttcatcc acatctccac tgccttttct aactgcaacc tgagccacat
     1441 cgatgaggtc atctacccgt gccccgtgga gccgagaaag atcattgact ccatggagtg
     1501 gttagatgac tctatcattg aagagatcac tcccaagcta attggggacc ggcccaatac
     1561 ctacacctac accaaagcct tgggagaggt agttgtgcag caagagagcg gaaacttgaa
     1621 tgtggctatc gtcaggccat ccatagtggg agcaacctgg caggagcctt tcccgggttg
     1681 ggttgataat ctaaatggac ccagtggact cattattgcg actgggaaag gatttcttcg
     1741 gtccataaaa gcaacaccca tggcagtggc agatctgatt ccagttgaca cagttgttaa
     1801 cctcaccata gcagtaggat ggtatactgc cgttcataga cctaagtcaa cgttaatcta
     1861 ccattccaca tctggcaatc tcaatccctg taactggtac gaaatgggat tacaggtctt
     1921 ggcgaccgtc gaaaagatcc catttgagag tgctttcaga aggccaaatg ctgacttcac
     1981 caccaacaat ttcactaccc agtattggaa caccgtcagc cactgggctc cggccatcat
     2041 ctatgacttc tatctgaggc ttactggaag gaaacccagg atgctgaagc tcatgaaccg
     2101 gctgctaaaa accatttcca tgctggagta tttcatcaac cacagctggg aatggagcac
     2161 aaacaacact gagatgcttc tgtcagagct cagtcctgaa gaccagagag tattcaactt
     2221 tgatgtgcgt cagttgaact ggcttgaata cattgagaat tatgttttgg gggttaagaa
     2281 gtatctactg aaagaggatc tggctggtat ccccaaagca aagcaacacc taaaaaggct
     2341 ccggaatatt cactacctct tcaacactgc cctgtttctt atcatctggc gcctcctcat
     2401 tgcaaggtct cagatggctc ggaacatctg gttcttcatt gtgagcttct gttacaagtt
     2461 catctcctac ttccgggcct ccagcacact caaggtctaa gaacattata ccagcccatc
     2521 atctgggacc tcagatacct ctaaggcagt aaactgggtc ttaagctaga aagtaacaag
     2581 cagcacacca agcttccagt cgaagttgcc attccatctt cttccctatt cttgagagag
     2641 agggagagag ggagagtatg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg tgtgtgtgtg
     2701 tgtgtgtgtg tgtgtgcgcg cgcgcgcgct tggttggttg gttggttggt tggttggttg
     2761 gttgggtttt ttccttagtt tttgttttgg ttcagtgagg aaagtcagac tgcatacatt
     2821 tacaaaaacg taacttccag attatgtcct gacaccacca ccccacacta tcacacatga
     2881 agcatgaaag cacttatttt cctttattta gcttttcttc ccaacaaaac taattttaac
     2941 tcactgagca tggaaaaaca catggcagaa ggctaagcag gccagagaaa ggcagcacca
     3001 agcaggggag catgctctgc accaaggcaa gagcttccaa ccattgtaaa ctgtgcaaag
     3061 ctcgacctcc ttaccatact gcacaagcag ccttctgtgt taaacactac agccctggtt
     3121 gagggggaag tgggctcgtg cctatcctgt ttctcacctc tgtccacact ttaaccctaa
     3181 aaggaacgta gataagtaca caccaagtaa gaaattgaat catacatgca ccagggagta
     3241 tttcgtttaa catgacttgg acatccccta ttctacaatt ttaatcacta ttatcctgaa
     3301 agcctctcaa gtccctttct tatttaatga tgttgccaaa gcccttctac ttaagtatct
     3361 cactcaggcc tcagtcagaa aggatgatgg ggagtgagat gttcctagac tagagccatg
     3421 gaaaccctcc tgacctttgc cagtgaggaa agcaaaactt caaataaagt tttaagttct
     3481 agtttctgtc ttcatgtgtg gagttgggag gagcacactc ctggtcacct gaggcccctt
     3541 gtacatcagt catcccagtc acatgttaat taattccatt cacaaattct catactcata
     3601 agctggcacc cagttttgct cacatttgag atgagggcat actgaactgc agatctctgc
     3661 atggtaacat gaaatattca aattaatgtc cacacatatc actgaaaacc acaaacgagc
     3721 agttagcacg tgtatgctca cattctgatg gctgaagtgt ggccagcact gaggtctcct
     3781 cagaaccacg aggaacatat tgggagaacc ctttctggca cagtttctgc aaacttgatt
     3841 aaggtcagtg actactgtcc agacagaaaa ctcaactctg aaataaagca cctgtgggtt
     3901 tccccatggg acacatctgc aagacacctc tgagttacat caaagacacc acctaaggat
     3961 acaataacag gaactcaaga cacaggaaaa gactaaaatg acagttgtaa agatttacta
     4021 ccttttgatc attgtttcat caatccaaga aatccagcga ctgagtttga acttcggtta
     4081 aataaaactc tgaattacta a
//
