LOCUS       XM_056985574            6979 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FA complementation group M (Fancm),
            transcript variant X1, mRNA.
ACCESSION   XM_056985574
VERSION     XM_056985574.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051341.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 1, 2024 this sequence was replaced by
            NM_001427663.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6979
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..6979
                     /gene="Fancm"
                     /note="FA complementation group M; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 6
                     ESTs, 2 Proteins, and 98% coverage of the annotated
                     genomic feature by RNAseq alignments, including 116
                     samples with support for all annotated introns"
                     /db_xref="GeneID:314172"
                     /db_xref="RGD:1307897"
     CDS             265..6318
                     /gene="Fancm"
                     /codon_start=1
                     /product="Fanconi anemia group M protein isoform X1"
                     /protein_id="XP_056841554.1"
                     /db_xref="GeneID:314172"
                     /db_xref="RGD:1307897"
                     /translation="MSGRQRTLFQTWGPSLVRGAGAPGCGQPRSPAVTESLPEEDDEV
                     LLVAAYEAEQQLDPGDGGFCAAAGALWIYPTNCPVRDYQLDISRTALFCNTLVCLPTG
                     LGKTFIAAVVMYNFYRWFPSGKVVFMAPTKPLVTQQMEACFHVMGIPQSHMAEMTGST
                     QAVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAAHVKCLVVDEAHKALGNYAYCQVVR
                     ELVKYTNHFRILALSATPGSDIKAVQQVITNLLIEKIELRSEDSPDILPYSHERRVEK
                     LVVPLGEELGAIQKTYVQILETFASSLIKRNILMKRDIPNLTKYQIILARDQFRKNPS
                     PNIVGVQQGIIEGELAICISLYHGYELLQQLGMRSLYFFLSGIMDGTKGMTRVKTELS
                     RNEDFTKLYSHLQSVFAHVRDAAAASEASAFQKGNKEKKFVYSHPKLKKLEEVILEHF
                     KSWNAKNTTEKKCQESRVMIFSSFRDSVEEIAEMLSQHQPGVRVMTFVGHASGKNTKG
                     YTQKEQLRVVRQFRDGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLIQRMGRT
                     GRRRQGRIVVILAEGREERTYNQSQSNKKNIYKAISGNRQVLRLYQGSPRMVPDKINP
                     ELHKMFITHGVYESEKARSVQRKSFSSRSGIKAGNSNKDGLLSEEEFNLWNRLYRLGD
                     SDTVKGVALPRSHFLSLQEDRVAQEPTTGIHQLSLSEWSLWQDHPLPTHQVEHSDRCH
                     HFISIMRMIEGMRHEEDECSYELKIKPFLQMEDVYSKYNAPRNGYKNVASVTRIAPKK
                     SSFRPSVDAGGSLSVTESEEGCADTVEQMDSEWTKITSLREKATTVGKGQTREQTDDD
                     HDDADSSDSDRNSPADVVSRVPPSGERVADVGGIPILGAVTEDDSHTGTLLMECQVTE
                     KSLARYSLDSGYSSFSDDKSLSSHLFLPLEEELYTERAAELFYRCQPMTEEVLANVEK
                     FLSHSPPSLSGLSDVEYAVTQGFELDNESCLPYPEREHSPKPGSPYPEREHSPKPASL
                     ALYTAVNSQSNLELNSAKHTNPPSEKDCLPATTHNNIPDQPSFCDSDSETHNIKNQNL
                     VSNSYGQIQVNLENNLVDENSHDDSEPPVLFTDEDESLLLFEDDLKNIEDGTEELNGV
                     GLPPLDRISQPLCVSDKTLISEMPPVSHFLISDELLDDDSEPEDQIICDTKCWEGVEG
                     RDEEIKTEGQPFDCSADLFSVTFDLGFCSSGSDDENPARASDRSSTLGTAEVPGRHSD
                     KEVKDASHASGPLGGTISPIPSEKMPWSPCAQSKECAPFHSALSLPVRERAMSTPLSK
                     AHRSSKTGAHVLKTLDSTKEKAGGQGFKVTLNPRFDNLGFSVEETKSSDQLSVYQSPR
                     CPKVEHLTSESEDDVFLKKTRKPKGNVLKSPEDQKNNEVDSPIHVVKKSRVLRSELSS
                     SDDESENFHRPCPKLEYFKDRNRNTRKGSKAQKKRIHMKALARGFLDEEAEVSGEDAD
                     CVSSDEGDDSENEKDSSLLDFVNDRTQLSQAINDSEMRAIYMKSVRSPLMSTKYKMVR
                     EKHNSMNIFSQIPEQDENYLEDSFCVAEEESCRSQSSEEEIFVDFNLTKDSFTDEDIR
                     YKTRHAVKLKQMNKKQNCTRSRKKLSRIILPDSDSSEEENTANGREDPSAGGHAADKH
                     TQQGQLWASGPSGSVQPKVLCNPAGNQSSGQRLQVLPNIMDAVPGALNVRAQSHNQTK
                     STSPPCASVESRKECGNRPVQLKVGDQDTSAAPCSASLLPDAEVLIAPRHPREGNRAC
                     ILVDSREITTGLEVISSLRTVHGLQVEICPLNGCDYIVSNRMVVERKSQSEMLSNTAK
                     NKFIEQIQRLQSMFQRICVIVEKDREKAGDISKMFRRTKCYDSLLTALVGAGIRILFS
                     SGQEETAGLIKELSLVEQRKNAGIHIPAVLDTGTCEALQFYLSIPGVSYVTALNMCHQ
                     FSSVKKMVNSSPEEISTCAQVTHQKAEEIYKYIHYTFDMQMLPNDLTQERQKSETCST
                     L"
ORIGIN      
        1 acaaaacttg caaaggcgac taaatccaga cactcgccca acttcgctca acacgcatgc
       61 gtttcagctg gtttccggaa tggcaaccaa tcatcttcct gctgcaaagt cggcggcgga
      121 ttcttcaacc cgaccggctg cggccagtcc cgccccccgg gttccactgt gtcactggcg
      181 ggagactgat gggcgtccga tccgtgtcgg ttgcaccgcg gtccgggcgg cttcctcagc
      241 ggagccccgc tgctgctggg catcatgagc ggacggcaga gaacgctctt ccagacgtgg
      301 ggcccgagcc tcgtgcgagg cgccggcgct ccgggctgcg gccagccgcg ctcgcccgcg
      361 gtgacggagt ctctcccgga ggaggacgat gaggtgctgt tggtggcagc gtacgaggct
      421 gaacagcaac tggatcccgg ggatggcggc ttctgcgcgg ctgcgggcgc cctgtggatc
      481 taccccacca attgccccgt gcgcgactac cagctggaca tctccaggac cgcgctgttc
      541 tgcaacaccc tggtgtgctt gcccaccggt ctggggaaga cctttattgc cgccgtggtc
      601 atgtataatt tctaccgctg gttcccttct ggcaaggtgg ttttcatggc acccacgaag
      661 cccctggtga cacagcagat ggaagcctgc ttccacgtga tgggtattcc acagtctcac
      721 atggctgaaa tgacaggttc aactcaagct gtcaacagga aggagatatg gtctagcagg
      781 agggttcttt ttcttacacc tcaagttatg gtaaatgacc tgactagagg ggctgtccct
      841 gctgcccatg taaagtgtct tgtggttgat gaagctcata aggctcttgg gaactacgct
      901 tactgccagg ttgtaaggga actggtcaaa tacaccaatc actttcgaat cttggctctt
      961 agtgccacac caggtagtga tatcaaggct gtgcaacagg tgatcactaa cctactaatt
     1021 gaaaagatag agcttcgttc ggaagactct ccggatattt tgccttactc tcacgaaaga
     1081 agagttgaaa agcttgttgt tccccttggg gaagaactag gagccattca aaagacatat
     1141 gtccagattt tggaaacatt tgccagttct ttgattaaga gaaatatttt gatgaaaaga
     1201 gacattccca acctaacaaa ataccagata attctggcaa gagatcaatt taggaaaaat
     1261 ccatccccaa atattgtggg agttcagcaa ggcataattg aaggggagtt agccatctgt
     1321 attagtttat accatggtta tgagttactg cagcaactgg gaatgcgatc attgtatttc
     1381 tttctctctg gaatcatgga tggaaccaaa ggaatgacaa gggtaaaaac tgagctcagc
     1441 cggaatgagg acttcacgaa gctctacagt cacctgcaga gcgtgtttgc ccacgtgcga
     1501 gatgccgctg cagccagcga ggcttcggct ttccagaaag gaaataaaga gaaaaaattt
     1561 gtctatagtc atccaaagtt aaagaaactg gaagaagtta tacttgaaca tttcaagtca
     1621 tggaatgcta aaaacaccac tgaaaagaag tgccaggaga gcagagttat gatcttctct
     1681 tcgtttcgag atagcgttga ggaaattgca gagatgcttt cccagcacca gccaggtgtg
     1741 agagtgatga cgtttgttgg ccacgcctca gggaaaaaca caaagggtta cacccagaag
     1801 gaacaactgc gggtggtgag acagttccgt gacggtggtt ataacaccct ggtttccacc
     1861 tgtgttggag aagaaggttt ggatataggg gaagtggatc tcataatatg ctttgatgcc
     1921 cagaagagcc caatccgcct cattcagcgc atgggtagaa ctggccgcag acggcaaggc
     1981 aggattgttg tcatcctcgc tgaaggacgg gaagagcgta catacaatca gagtcagtcc
     2041 aacaaaaaaa atatttataa agctatttca ggtaacagac aagtgcttcg tttataccaa
     2101 ggaagtccac gaatggttcc tgataaaatc aatcctgaat tacacaaaat gttcatcaca
     2161 catggtgtct atgaatcaga gaaggctcgg agtgtacagc gaaagtcgtt ctcctcaagg
     2221 agtggaataa aagctggtaa ttcgaataaa gatgggctct tgtcagaaga ggaatttaac
     2281 ctatggaaca gactctatag gttaggagac agcgacacag ttaaaggagt ggctttgcct
     2341 cggtctcact tcctgtcttt acaggaggac agagtggctc aagaaccaac cactggaatt
     2401 caccagctct ctctctccga gtggagtctc tggcaagatc atccgcttcc tacgcatcag
     2461 gttgagcatt cggatcgatg ccaccatttc atcagcatca tgcgaatgat agaaggaatg
     2521 agacatgaag aggatgaatg cagctatgaa ttgaaaatta aaccttttct acaaatggaa
     2581 gatgtctact caaaatataa tgctccaagg aatggatata agaatgtagc cagtgtcacc
     2641 agaattgctc ccaagaagtc ttcatttaga ccgagtgtcg atgcaggagg ctctttgtca
     2701 gtgacagagt ctgaggaagg gtgtgctgac accgttgaac aaatggattc tgaatggacc
     2761 aaaattactt ctctaaggga aaaagccaca acagtgggaa aaggccagac tcgtgagcaa
     2821 actgatgacg accatgatga tgcagactct tcagacagtg acaggaattc tcctgcagac
     2881 gttgtttccc gggtaccacc cagtggtgaa agagtggcag atgtaggtgg aatccccatc
     2941 ctgggtgctg ttactgaaga tgatagccat acaggaacat tgttaatgga gtgtcaggtc
     3001 acagagaagt cacttgccag gtactcctta gattctggtt atagtagttt cagtgatgat
     3061 aaatctctgt cctcacattt gtttcttcca ttggaagaag agctgtacac agagagagca
     3121 gctgaactgt tttatcgttg tcagcccatg acagaagagg tactggctaa tgtggagaaa
     3181 tttctatctc attctccccc ttccctcagt ggactctcag acgtggagta tgccgttact
     3241 cagggttttg aacttgacaa tgagtcctgc ttaccctacc cagagcgtga acacagtcct
     3301 aaacctggat caccctaccc agagcgtgaa cacagtccta aacctgcttc tctggcatta
     3361 tacactgctg tgaattctca atcaaactta gaattgaatt cagctaaaca tactaatcct
     3421 ccttctgaaa aagattgtct ccctgccaca actcataata acattcctga tcagccctcc
     3481 ttctgtgact ctgatagtga aacccacaat attaaaaatc agaatttagt atctaacagt
     3541 tatggtcaaa tacaagtaaa ccttgaaaat aatttggttg acgagaacag ccatgatgat
     3601 agtgagcccc cagtattgtt cactgatgag gatgagagtt tactgttatt tgaagatgat
     3661 ttgaagaata ttgaagatgg tactgaagag ttgaatgggg tgggccttcc tcccttggac
     3721 agaatcagtc aacccctctg tgtgtcagat aaaactctca taagtgaaat gcctccagtc
     3781 tctcacttct taatttcgga tgagttgtta gatgatgatt ctgagcctga agatcaaatc
     3841 atttgtgata ccaagtgttg ggaaggtgtg gagggcagag atgaagagat aaaaactgag
     3901 gggcagcctt tcgactgctc tgcggactta ttctctgtta cctttgactt aggattttgt
     3961 agttcaggtt ctgatgatga aaacccagca cgtgcatctg ataggagtag caccctggga
     4021 acagccgaag tgcctggacg acattccgat aaggaggtaa aggatgccag tcatgcttca
     4081 ggtccactgg gtggaaccat atcacccatc ccaagtgaaa aaatgccgtg gtcgccctgc
     4141 gcacagagta aggaatgcgc acctttccac tctgctctgt ccttaccagt gagggagaga
     4201 gccatgagta cgccactttc taaggcacat cggagttcta agacaggagc acacgtgctc
     4261 aagacactgg actctaccaa ggagaaagcc ggtggacagg gtttcaaagt gacattgaat
     4321 ccaagattcg acaatttagg attttctgta gaagagacca aaagcagtga tcagctctca
     4381 gtgtatcagt cccctcggtg ccctaaagtt gaacacttaa ctagtgaaag cgaagatgat
     4441 gttttcctga aaaaaactag aaaaccaaaa ggaaatgtcc tgaagtcccc cgaggatcag
     4501 aaaaacaatg aagttgattc tcctattcat gttgtaaaaa agtccagggt gcttaggtca
     4561 gaattatcat ctagcgacga tgagagtgag aattttcaca gaccatgtcc aaaattggaa
     4621 tacttcaagg atcgtaacag gaacaccaga aaaggctcca aagcccaaaa gaaacggatt
     4681 catatgaagg ctctagctcg ggggttctta gacgaggaag cagaggtctc tggagaagat
     4741 gcggactgtg tctcatcaga tgagggtgat gactctgaga acgagaagga ttcctcactg
     4801 cttgattttg taaatgaccg gacccagctt tcacaggcta taaatgattc tgaaatgaga
     4861 gctatttaca tgaaatctgt gcgtagtcca ttgatgagca ctaagtacaa aatggtccgt
     4921 gagaaacata acagcatgaa cattttctca cagattcctg agcaagatga aaactattta
     4981 gaggacagtt tttgtgttgc tgaagaagag tcttgccgaa gccaatcaag tgaagaagaa
     5041 atttttgttg actttaactt aactaaagat tccttcacag atgaggatat aaggtataaa
     5101 actcggcatg cagtaaagct caaacaaatg aacaagaaac aaaactgtac acggtcaaga
     5161 aagaaactgt ctagaattat cttaccagac agtgattcaa gtgaggaaga aaacactgcg
     5221 aatggcagag aagatcccag tgctggtggc catgctgctg acaagcacac acagcagggc
     5281 cagctctggg cttcagggcc atctgggtca gtgcagccca aggtcctttg taatccagca
     5341 gggaatcagt catcagggca gagactacag gtgctaccaa acataatgga tgccgttcct
     5401 ggagccttga atgtgagggc tcagagccat aatcaaacca aatctacgtc accaccatgt
     5461 gctagcgttg agtcaaggaa ggagtgtggg aaccgtccag ttcagttgaa ggttggtgat
     5521 caggacactt cagcagcacc ctgctctgct tcactgctac ctgacgctga ggtactcata
     5581 gcccctagac atccgcgaga aggaaacagg gcctgcattc ttgtagacag tcgagaaatc
     5641 actaccggtt tggaagtcat ttcttcgcta cgaacagttc acgggttaca agtggagatt
     5701 tgtcctctta atggctgtga ctacatcgta agcaaccgaa tggtagtaga aaggaagtct
     5761 cagtctgaaa tgttaagtaa tactgctaag aacaagttca tcgagcagat tcagcgcctg
     5821 cagagcatgt ttcaaagaat atgtgtgatt gtggaaaaag acagagaaaa agcaggagac
     5881 atatcaaaaa tgtttagaag aacaaagtgc tatgacagtt tgctgactgc cttagttggt
     5941 gctggaatcc gaatcctttt cagctctgga caagaagaaa ctgcaggttt aataaaggag
     6001 ctgtcgttgg tggaacaaag aaagaatgcc gggattcata ttccagcagt gctagacact
     6061 ggtacatgtg aggcactcca gttctactta agtattcccg gtgtaagtta tgtgactgcc
     6121 ttaaatatgt gtcaccagtt ttcatctgtg aaaaagatgg tgaacagctc ccctgaagaa
     6181 atctccacat gtgcgcaagt aactcatcaa aaggctgagg aaatctataa atatattcac
     6241 tatacatttg atatgcaaat gttaccaaat gatcttactc aggaaagaca gaaatcagaa
     6301 acatgctcga cactctgagt cactacgaaa gaactctcat aatgctaata tatttcaata
     6361 atcattgtag tttgtgatta ccagtttaaa atatgtaaat atttcatctc ttaatgatct
     6421 ttacattgta tactttttta tttataaact atataattta tttttaaaag gaaatctttg
     6481 atattccaca atcattttga ttagaccaaa acaaattttt actgaataaa tcaagactgt
     6541 gtgaagtgat cagagtggtt taagcatcta agtaaagcaa agagctggga ggtgttcagc
     6601 tgcctcatgt gttgtgcctt gtgttggctg cacaagcctg atgacctgag ctcatcctgt
     6661 gctggctggt ctaatgtcaa cttaagttat ctggaaggag ggaaccttga ttgagaaaag
     6721 atctactgta agtagttatt gttgggagtg gaccaaaacc attactggtg gtgccatccc
     6781 tgggctggtg gtcctgggtt ctataagaaa gcaagatgag caagtcacgt gaagcaggcc
     6841 agtaagcagt acccctccgt agcctctgca tcagctcctg cctccaagtg ccagccctgc
     6901 ttgaactgct gtgctgacat cctccggtga agagactatg atctggaagt ataagccaaa
     6961 taaaacctct cctccgcaa
//
