LOCUS       XM_039101040            3545 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FA complementation group I (Fanci),
            transcript variant X5, mRNA.
ACCESSION   XM_039101040
VERSION     XM_039101040.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3545
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3545
                     /gene="Fanci"
                     /note="FA complementation group I; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, and 100% coverage of the annotated genomic feature
                     by RNAseq alignments, including 26 samples with support
                     for all annotated introns"
                     /db_xref="GeneID:100360594"
                     /db_xref="RGD:2321863"
     CDS             183..3014
                     /gene="Fanci"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X5"
                     /protein_id="XP_038956968.1"
                     /db_xref="GeneID:100360594"
                     /db_xref="RGD:2321863"
                     /translation="MDSYGPKKILDGKAVEIGSSLSKMTNQHACKLGADILLETFKIH
                     EMIRQEILEQVLNRVVTRTSSPISHFLDLFSDIIMYAPLILQSCSKVTETFDYLSFLP
                     LQTVQGLLKAVQPLLKISMSMRDSLILVLRKALFASQLDARKSAVAGFLLLLKNFKVL
                     GSLPSSQCTQSIGVTQVHVDVHSRYSAVANETFCLEIIDSLKRCLGQQADVRLMLYEG
                     FYDVLRRNSQLASSIMQTLFSQLKQFYEPEPDLLPPLKLGACVLTQGSQTFLQEPLGH
                     LLSCIQHCLAWYKSRVVPLQQGDEGEEEQEEEELYHELDDMLESITIRMIKSELEDFE
                     LDKSADFSQNNNVGIKNNICASLVMGVCEVLMEYNFSISNFSKSKSEEILSLFMCYKK
                     FSDILSEKAGKGKAKMASKASDSLLSMKFVSDLLTALFRDSIQSHEESLSVLRSSSEF
                     MHYALNVALQKVQQLTRTGCVSGPDGQNPDRIFQHLCDITRVLFWRYTSIPTSVEESA
                     KKEKGKSISLLCLEALQKTFSAVLQFYQPKVQQFLQALDVMSTEEEEAGVTVTQRASF
                     QIRQFQRSLLNLLSSQEEDFNSKEALLLVTVLSTLSKLLEPTSPQFVQMLSWTSKICK
                     EHSQEDASFCKSLMSLFFSLHVLYKSPVTLLRDLSQDIHGQLGDIDQDVEIEKTDHFA
                     IVNLRTAAPTVCLLVLSQAEKVLEEVDWLITKIKGSVNQETLSDEMTPEDASSQAVPP
                     TVHIEKAITMQLGTLVTFFHELVQTALPSGSCVDTLLKDLSKIYSTLTAFVKYYLQVC
                     QSSRRIPNTVEKLVKLSGSHLTPVCYSFISYVQNKSSNNPKCPEKEKAAVSKSMAKVL
                     RETKPIPNLVFAIEQYEKFLIQLSKKSKVNLMQHMKLSTSRDFKIKGNVLDMVLREEG
                     EDENEEGTASAHTQQDREPAKKRRKKCLS"
ORIGIN      
        1 gttgtcagag cttgttactg ccccagcaga tgagcttcat cacgtggaag gcactattat
       61 tctgcacatc gtgtttgcca tcaaactgga ctgtgaattg ggcagagaac tgctgaaaca
      121 cttgaagtgt tcatagttgg gatcatgtaa ctcaaggtct gatagaattt ggtttcatct
      181 tgatggattc ctatgggcca aagaagattc ttgatggaaa agctgttgaa attggctcca
      241 gtctttctaa aatgacaaac cagcatgcat gtaagctggg agctgatatc ttgttggaaa
      301 cctttaaaat ccacgagatg atcagacaag aaatcctgga gcaagtcctc aatagagttg
      361 ttactcgaac gtcctctccc atcagtcatt tcttagactt gttttcagat atcatcatgt
      421 atgcaccttt aattcttcag agctgttcca aagtcacaga gacatttgac tatttgtcct
      481 ttctgcccct ccagactgtg caagggctgc tcaaggcggt gcagccactt ctcaagatca
      541 gcatgtcgat gagagactcc ttgatcctcg tcttgaggaa agctttgttt gccagtcagc
      601 tggatgcccg gaaatctgct gttgctgggt ttttgctgct cttaaagaac tttaaagtcc
      661 taggcagcct gccgtcctca cagtgcacgc agtctattgg tgttacacag gtgcacgtgg
      721 atgttcacag ccgatacagc gctgtcgcca atgagacctt ttgcctcgag atcatagaca
      781 gcttgaaaag atgcttgggg cagcaggccg acgtccggct tatgctttat gagggcttct
      841 acgatgtcct tcgacggaac tcgcagctgg ctagttcaat catgcagact ctcttctcgc
      901 agttgaaaca gttctatgag ccagagcctg atctgctccc tcctctgaaa ctgggagctt
      961 gcgttctgac ccaaggaagt cagacctttc tccaagagcc gctgggtcat ctgctgtctt
     1021 gcattcagca ttgcttggcc tggtataaga gcagagtagt tcccctgcaa caaggagatg
     1081 aaggggagga ggagcaggag gaggaggagt tgtaccatga gctggatgac atgttggagt
     1141 ccattactat cagaatgatc aagagtgagc tagaagactt tgagctggat aagtcagcgg
     1201 atttctctca gaacaataat gtcggcatca agaataacat ctgtgcgagt cttgtaatgg
     1261 gagtgtgtga ggttctaatg gaatataatt tctccataag taatttcagc aagagtaagt
     1321 ctgaggagat tctgagcctc tttatgtgtt acaagaagtt ctctgacatc ctcagtgaaa
     1381 aagctggtaa aggcaaagcc aagatggcca gtaaggccag cgatagtctt ctgtccatga
     1441 agtttgtatc tgatctcctc actgctctct tcagagacag catccagagt catgaagaga
     1501 gtctgtctgt cctgcggtcc agcagcgagt ttatgcacta tgctttgaac gttgctctgc
     1561 agaaggtaca gcagctaaca cgaacagggt gcgtgagtgg tcctgacggc cagaacccag
     1621 acaggatctt tcagcacctc tgtgacataa ctcgggtctt gttttggaga tacacgtcaa
     1681 ttcctacctc tgtggaggaa tcagcaaaga aagagaaggg gaagagcatc tcactgctgt
     1741 gcttggaggc tttgcagaag acattcagcg ccgtgctgca gttctatcag ccaaaggtcc
     1801 agcagtttct ccaggctctg gatgtcatga gcacagaaga agaagaagca ggtgtcaccg
     1861 tcactcagag ggcctcgttc cagatccggc agtttcagag gtccttgttg aatctgctta
     1921 gcagccaaga ggaagacttt aacagtaaag aggccctcct gctcgtcaca gtcctctcca
     1981 ccttgtccaa gctgctggag cccacgtcac ctcagtttgt acagatgtta tcctggacat
     2041 ctaagatttg caaggaacac agccaggagg atgcctcatt ttgcaagagt ttgatgagcc
     2101 tgttcttcag cctgcatgtg ttatataaga gtcctgtcac cctgcttcgt gacttgtccc
     2161 aggatatcca tggacagctg ggagacatag atcaagatgt agagatcgag aagacggacc
     2221 actttgctat agtgaatttg agaacggctg cccccactgt ctgtttactt gttctgagtc
     2281 aggctgagaa agtcctagaa gaagtggatt ggttaatcac caagatcaag ggctcagtga
     2341 accaagagac tctgtcagat gaaatgactc cagaagatgc ctcttctcaa gcagttccac
     2401 caactgtcca cattgagaaa gccatcacca tgcaactggg aacactggtt acattcttcc
     2461 atgagctagt gcagacagcc ttgccatcgg gcagctgtgt agacacttta ttaaaggacc
     2521 tgtccaaaat atacagcacc ctgacagcat tcgtcaaata ctatctccag gtatgtcaga
     2581 gctccagaag aattccaaac accgtggaaa agctggtgaa gctgtcaggc tctcatctga
     2641 cccctgtgtg ttactctttc atttcttatg tacaaaataa gagcagtaac aacccaaagt
     2701 gcccagaaaa ggagaaggct gcggttagca aatccatggc taaagttctt cgtgaaacca
     2761 agccaatccc taaccttgtc tttgccattg aacagtatga aaaatttctt atccagctgt
     2821 ctaaaaagtc caaggtcaac ctgatgcagc acatgaagct aagtacatct cgggacttca
     2881 agatcaaagg caatgtccta gacatggttc ttcgagagga gggggaagat gaaaacgaag
     2941 agggcactgc atcagcacat acacagcagg acagagaacc agccaagaag agaaggaaga
     3001 aatgcctgag ttaatgtgac cttggggcat ctgcttcatt tgtgcccaac agtacccctt
     3061 gtcatacagc ctgcactgat gttggtgtcc tgttctgaac acactgaact gtgccttccg
     3121 ttagaaggac tcttctgggc aggtcctgct acagaaaaat ggctgccttt tgcaaaaagc
     3181 acatgggaaa gcctgagtta aggagcctgc accacgccaa tgaagctcca caggagcaaa
     3241 tacagagcct ccagacagag ctagggtcca ggctggcttc gtttttccaa ggagcctttg
     3301 gtgagttcaa ttatctggta aatatccagt gcttcacctg taagacagtg ggaactggtt
     3361 aggatccctc cagaaccatg actgagctcg ggtcaaaaag acagtgggtg agagggagta
     3421 tttgagagta gctgccacga gtggcggctt gcctttggca ttttcagcag atacattttt
     3481 ccacataagg atgcactttg gcttatacaa taaatcttta aacatttctg gggtagtttt
     3541 gaaaa
//
