LOCUS       XM_039101038            4542 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FA complementation group I (Fanci),
            transcript variant X3, mRNA.
ACCESSION   XM_039101038
VERSION     XM_039101038.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4542
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4542
                     /gene="Fanci"
                     /note="FA complementation group I; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 1 long SRA read, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 33 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:100360594"
                     /db_xref="RGD:2321863"
     CDS             115..4011
                     /gene="Fanci"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X3"
                     /protein_id="XP_038956966.1"
                     /db_xref="GeneID:100360594"
                     /db_xref="RGD:2321863"
                     /translation="MDLKILSLATDKTTDKLQEFLQTLKADDLASLLESQAVKGRAVG
                     TFLRAILKGSPCSEEDGALRRYKIYSCCIQLVESGDLQQDVASEIIGLLMLEVHHFPG
                     PLLVDLANDFVGAVREDRLVNGKSLELLPIILTALATKKEGLTCGKGDLNGEECKRQL
                     IDTLCSVRWAQRYVIQLTSVFKDVRLTPEEMKLVVAKVLTMFSRLNLQEIPPLVYQLL
                     VLSSKGSRRSVLDGIIAFFRELDKQHSAEQSSDELSELVTAPADELHHVEGTIILHIV
                     FAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDFLKTSV
                     VKSFKDLQLLQGSKFLQTLVPQRTCVSTMILEVVKNSVHSWDHVTQGLIEFGFILMDS
                     YGPKKILDGKAVEIGSSLSKMTNQHACKLGADILLETFKIHEMIRQEILEQVLNRVVT
                     RTSSPISHFLDLFSDIIMYAPLILQSCSKVTETFDYLSFLPLQTVQGLLKAVQPLLKI
                     SMSMRDSLILVLRKALFASQLDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQV
                     HVDVHSRYSAVANETFCLEIIDSLKRCLGQQADVRLMLYEGFYDVLRRNSQLASSIMQ
                     TLFSQGHLLSCIQHCLAWYKSRVVPLQQGDEGEEEQEEEELYHELDDMLESITIRMIK
                     SELEDFELDKSADFSQNNNVGIKNNICASLVMGVCEVLMEYNFSISNFSKSKSEEILS
                     LFMCYKKFSDILSEKAGKGKAKMASKASDSLLSMKFVSDLLTALFRDSIQSHEESLSV
                     LRSSSEFMHYALNVALQKVQQLTRTGCVSGPDGQNPDRIFQHLCDITRVLFWRYTSIP
                     TSVEESAKKEKGKSISLLCLEALQKTFSAVLQFYQPKVQQFLQALDVMSTEEEEAGVT
                     VTQRASFQIRQFQRSLLNLLSSQEEDFNSKEALLLVTVLSTLSKLLEPTSPQFVQMLS
                     WTSKICKEHSQEDASFCKSLMSLFFSLHVLYKSPVTLLRDLSQDIHGQLGDIDQDVEI
                     EKTDHFAIVNLRTAAPTVCLLVLSQAEKVLEEVDWLITKIKGSVNQETLSDEMTPEDA
                     SSQAVPPTVHIEKAITMQLGTLVTFFHELVQTALPSGSCVDTLLKDLSKIYSTLTAFV
                     KYYLQVCQSSRRIPNTVEKLVKLSGSHLTPVCYSFISYVQNKSSNNPKCPEKEKAAVS
                     KSMAKVLRETKPIPNLVFAIEQYEKFLIQLSKKSKVNLMQHMKLSTSRDFKIKGNVLD
                     MVLREEGEDENEEGTASAHTQQDREPAKKRRKKCLS"
ORIGIN      
        1 gcgccttggg ggcgggactt gttgctctgg gaaacggaag tgcggctacg tggagttgag
       61 cgggaatttt ggaaggatcc ttcgctgagg ttgagttctc taatatgagc aagcatggat
      121 ctgaaaattt tatctctagc aacagataaa actacagaca aactgcagga atttcttcaa
      181 accctgaaag ctgatgactt ggccagtctc cttgagagcc aagcagtgaa aggaagagct
      241 gttggaacgt tcctgagagc catcctcaaa ggctccccct gctctgagga agatggagcc
      301 cttaggagat acaagatata ttcttgctgt atccaactgg tcgaatcagg agatttgcag
      361 caagacgttg catcggagat cataggattg ctgatgctgg aggttcacca ttttccaggc
      421 ccgttacttg ttgacttggc caatgacttt gtgggtgctg tcagagagga ccgcctagtg
      481 aatggaaaat ctttggagtt actacccatc atccttactg ccttggctac taagaaggaa
      541 ggcctgactt gtgggaaagg tgatttgaat ggggaagaat gtaagaggca gttgattgac
      601 accctgtgtt ctgtcagatg ggctcaacga tacgtgatcc agctcacttc tgtgttcaag
      661 gatgtccgtc taacgccaga agaaatgaaa cttgtggtgg ccaaagtgtt gacgatgttt
      721 tcaaggttga atcttcaaga aattccaccg ctggtctatc agcttctggt tctctcttcc
      781 aaggggagca gaaggagcgt tctggatgga ataatagcct tcttcaggga gctagacaag
      841 cagcacagcg cggaacagag cagcgatgag ttgtcagagc ttgttactgc cccagcagat
      901 gagcttcatc acgtggaagg cactattatt ctgcacatcg tgtttgccat caaactggac
      961 tgtgaattgg gcagagaact gctgaaacac ttgaaggctg gacagcaagg ggatcccagt
     1021 aaatgcctat gtcccttcag catcgctctt ctcctctctc tcacgagaat acagagattt
     1081 gaggaacagg tgtttgattt tttaaagact tccgttgtaa aaagctttaa ggatcttcag
     1141 ctcctccaag gctcaaaatt tcttcagact ctcgtccctc agagaacttg cgtttcaacc
     1201 atgatcctag aagtggtgaa gaatagtgtt catagttggg atcatgtaac tcaaggtctg
     1261 atagaatttg gtttcatctt gatggattcc tatgggccaa agaagattct tgatggaaaa
     1321 gctgttgaaa ttggctccag tctttctaaa atgacaaacc agcatgcatg taagctggga
     1381 gctgatatct tgttggaaac ctttaaaatc cacgagatga tcagacaaga aatcctggag
     1441 caagtcctca atagagttgt tactcgaacg tcctctccca tcagtcattt cttagacttg
     1501 ttttcagata tcatcatgta tgcaccttta attcttcaga gctgttccaa agtcacagag
     1561 acatttgact atttgtcctt tctgcccctc cagactgtgc aagggctgct caaggcggtg
     1621 cagccacttc tcaagatcag catgtcgatg agagactcct tgatcctcgt cttgaggaaa
     1681 gctttgtttg ccagtcagct ggatgcccgg aaatctgctg ttgctgggtt tttgctgctc
     1741 ttaaagaact ttaaagtcct aggcagcctg ccgtcctcac agtgcacgca gtctattggt
     1801 gttacacagg tgcacgtgga tgttcacagc cgatacagcg ctgtcgccaa tgagaccttt
     1861 tgcctcgaga tcatagacag cttgaaaaga tgcttggggc agcaggccga cgtccggctt
     1921 atgctttatg agggcttcta cgatgtcctt cgacggaact cgcagctggc tagttcaatc
     1981 atgcagactc tcttctcgca gggtcatctg ctgtcttgca ttcagcattg cttggcctgg
     2041 tataagagca gagtagttcc cctgcaacaa ggagatgaag gggaggagga gcaggaggag
     2101 gaggagttgt accatgagct ggatgacatg ttggagtcca ttactatcag aatgatcaag
     2161 agtgagctag aagactttga gctggataag tcagcggatt tctctcagaa caataatgtc
     2221 ggcatcaaga ataacatctg tgcgagtctt gtaatgggag tgtgtgaggt tctaatggaa
     2281 tataatttct ccataagtaa tttcagcaag agtaagtctg aggagattct gagcctcttt
     2341 atgtgttaca agaagttctc tgacatcctc agtgaaaaag ctggtaaagg caaagccaag
     2401 atggccagta aggccagcga tagtcttctg tccatgaagt ttgtatctga tctcctcact
     2461 gctctcttca gagacagcat ccagagtcat gaagagagtc tgtctgtcct gcggtccagc
     2521 agcgagttta tgcactatgc tttgaacgtt gctctgcaga aggtacagca gctaacacga
     2581 acagggtgcg tgagtggtcc tgacggccag aacccagaca ggatctttca gcacctctgt
     2641 gacataactc gggtcttgtt ttggagatac acgtcaattc ctacctctgt ggaggaatca
     2701 gcaaagaaag agaaggggaa gagcatctca ctgctgtgct tggaggcttt gcagaagaca
     2761 ttcagcgccg tgctgcagtt ctatcagcca aaggtccagc agtttctcca ggctctggat
     2821 gtcatgagca cagaagaaga agaagcaggt gtcaccgtca ctcagagggc ctcgttccag
     2881 atccggcagt ttcagaggtc cttgttgaat ctgcttagca gccaagagga agactttaac
     2941 agtaaagagg ccctcctgct cgtcacagtc ctctccacct tgtccaagct gctggagccc
     3001 acgtcacctc agtttgtaca gatgttatcc tggacatcta agatttgcaa ggaacacagc
     3061 caggaggatg cctcattttg caagagtttg atgagcctgt tcttcagcct gcatgtgtta
     3121 tataagagtc ctgtcaccct gcttcgtgac ttgtcccagg atatccatgg acagctggga
     3181 gacatagatc aagatgtaga gatcgagaag acggaccact ttgctatagt gaatttgaga
     3241 acggctgccc ccactgtctg tttacttgtt ctgagtcagg ctgagaaagt cctagaagaa
     3301 gtggattggt taatcaccaa gatcaagggc tcagtgaacc aagagactct gtcagatgaa
     3361 atgactccag aagatgcctc ttctcaagca gttccaccaa ctgtccacat tgagaaagcc
     3421 atcaccatgc aactgggaac actggttaca ttcttccatg agctagtgca gacagccttg
     3481 ccatcgggca gctgtgtaga cactttatta aaggacctgt ccaaaatata cagcaccctg
     3541 acagcattcg tcaaatacta tctccaggta tgtcagagct ccagaagaat tccaaacacc
     3601 gtggaaaagc tggtgaagct gtcaggctct catctgaccc ctgtgtgtta ctctttcatt
     3661 tcttatgtac aaaataagag cagtaacaac ccaaagtgcc cagaaaagga gaaggctgcg
     3721 gttagcaaat ccatggctaa agttcttcgt gaaaccaagc caatccctaa ccttgtcttt
     3781 gccattgaac agtatgaaaa atttcttatc cagctgtcta aaaagtccaa ggtcaacctg
     3841 atgcagcaca tgaagctaag tacatctcgg gacttcaaga tcaaaggcaa tgtcctagac
     3901 atggttcttc gagaggaggg ggaagatgaa aacgaagagg gcactgcatc agcacataca
     3961 cagcaggaca gagaaccagc caagaagaga aggaagaaat gcctgagtta atgtgacctt
     4021 ggggcatctg cttcatttgt gcccaacagt accccttgtc atacagcctg cactgatgtt
     4081 ggtgtcctgt tctgaacaca ctgaactgtg ccttccgtta gaaggactct tctgggcagg
     4141 tcctgctaca gaaaaatggc tgccttttgc aaaaagcaca tgggaaagcc tgagttaagg
     4201 agcctgcacc acgccaatga agctccacag gagcaaatac agagcctcca gacagagcta
     4261 gggtccaggc tggcttcgtt tttccaagga gcctttggtg agttcaatta tctggtaaat
     4321 atccagtgct tcacctgtaa gacagtggga actggttagg atccctccag aaccatgact
     4381 gagctcgggt caaaaagaca gtgggtgaga gggagtattt gagagtagct gccacgagtg
     4441 gcggcttgcc tttggcattt tcagcagata catttttcca cataaggatg cactttggct
     4501 tatacaataa atctttaaac atttctgggg tagttttgaa aa
//
