LOCUS       XM_039101036            4644 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FA complementation group I (Fanci),
            transcript variant X1, mRNA.
ACCESSION   XM_039101036
VERSION     XM_039101036.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427670.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4644
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4644
                     /gene="Fanci"
                     /note="FA complementation group I; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 4
                     ESTs, 1 long SRA read, 1 Protein, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     76 samples with support for all annotated introns"
                     /db_xref="GeneID:100360594"
                     /db_xref="RGD:2321863"
     CDS             115..4113
                     /gene="Fanci"
                     /codon_start=1
                     /product="Fanconi anemia group I protein isoform X1"
                     /protein_id="XP_038956964.1"
                     /db_xref="GeneID:100360594"
                     /db_xref="RGD:2321863"
                     /translation="MDLKILSLATDKTTDKLQEFLQTLKADDLASLLESQAVKGRAVG
                     TFLRAILKGSPCSEEDGALRRYKIYSCCIQLVESGDLQQDVASEIIGLLMLEVHHFPG
                     PLLVDLANDFVGAVREDRLVNGKSLELLPIILTALATKKEGLTCGKGDLNGEECKRQL
                     IDTLCSVRWAQRYVIQLTSVFKDVRLTPEEMKLVVAKVLTMFSRLNLQEIPPLVYQLL
                     VLSSKGSRRSVLDGIIAFFRELDKQHSAEQSSDELSELVTAPADELHHVEGTIILHIV
                     FAIKLDCELGRELLKHLKAGQQGDPSKCLCPFSIALLLSLTRIQRFEEQVFDFLKTSV
                     VKSFKDLQLLQGSKFLQTLVPQRTCVSTMILEVVKNSVHSWDHVTQGLIEFGFILMDS
                     YGPKKILDGKAVEIGSSLSKMTNQHACKLGADILLETFKIHEMIRQEILEQVLNRVVT
                     RTSSPISHFLDLFSDIIMYAPLILQSCSKVTETFDYLSFLPLQTVQGLLKAVQPLLKI
                     SMSMRDSLILVLRKALFASQLDARKSAVAGFLLLLKNFKVLGSLPSSQCTQSIGVTQV
                     HVDVHSRYSAVANETFCLEIIDSLKRCLGQQADVRLMLYEGFYDVLRRNSQLASSIMQ
                     TLFSQLKQFYEPEPDLLPPLKLGACVLTQGSQTFLQEPLGHLLSCIQHCLAWYKSRVV
                     PLQQGDEGEEEQEEEELYHELDDMLESITIRMIKSELEDFELDKSADFSQNNNVGIKN
                     NICASLVMGVCEVLMEYNFSISNFSKSKSEEILSLFMCYKKFSDILSEKAGKGKAKMA
                     SKASDSLLSMKFVSDLLTALFRDSIQSHEESLSVLRSSSEFMHYALNVALQKVQQLTR
                     TGCVSGPDGQNPDRIFQHLCDITRVLFWRYTSIPTSVEESAKKEKGKSISLLCLEALQ
                     KTFSAVLQFYQPKVQQFLQALDVMSTEEEEAGVTVTQRASFQIRQFQRSLLNLLSSQE
                     EDFNSKEALLLVTVLSTLSKLLEPTSPQFVQMLSWTSKICKEHSQEDASFCKSLMSLF
                     FSLHVLYKSPVTLLRDLSQDIHGQLGDIDQDVEIEKTDHFAIVNLRTAAPTVCLLVLS
                     QAEKVLEEVDWLITKIKGSVNQETLSDEMTPEDASSQAVPPTVHIEKAITMQLGTLVT
                     FFHELVQTALPSGSCVDTLLKDLSKIYSTLTAFVKYYLQVCQSSRRIPNTVEKLVKLS
                     GSHLTPVCYSFISYVQNKSSNNPKCPEKEKAAVSKSMAKVLRETKPIPNLVFAIEQYE
                     KFLIQLSKKSKVNLMQHMKLSTSRDFKIKGNVLDMVLREEGEDENEEGTASAHTQQDR
                     EPAKKRRKKCLS"
ORIGIN      
        1 gcgccttggg ggcgggactt gttgctctgg gaaacggaag tgcggctacg tggagttgag
       61 cgggaatttt ggaaggatcc ttcgctgagg ttgagttctc taatatgagc aagcatggat
      121 ctgaaaattt tatctctagc aacagataaa actacagaca aactgcagga atttcttcaa
      181 accctgaaag ctgatgactt ggccagtctc cttgagagcc aagcagtgaa aggaagagct
      241 gttggaacgt tcctgagagc catcctcaaa ggctccccct gctctgagga agatggagcc
      301 cttaggagat acaagatata ttcttgctgt atccaactgg tcgaatcagg agatttgcag
      361 caagacgttg catcggagat cataggattg ctgatgctgg aggttcacca ttttccaggc
      421 ccgttacttg ttgacttggc caatgacttt gtgggtgctg tcagagagga ccgcctagtg
      481 aatggaaaat ctttggagtt actacccatc atccttactg ccttggctac taagaaggaa
      541 ggcctgactt gtgggaaagg tgatttgaat ggggaagaat gtaagaggca gttgattgac
      601 accctgtgtt ctgtcagatg ggctcaacga tacgtgatcc agctcacttc tgtgttcaag
      661 gatgtccgtc taacgccaga agaaatgaaa cttgtggtgg ccaaagtgtt gacgatgttt
      721 tcaaggttga atcttcaaga aattccaccg ctggtctatc agcttctggt tctctcttcc
      781 aaggggagca gaaggagcgt tctggatgga ataatagcct tcttcaggga gctagacaag
      841 cagcacagcg cggaacagag cagcgatgag ttgtcagagc ttgttactgc cccagcagat
      901 gagcttcatc acgtggaagg cactattatt ctgcacatcg tgtttgccat caaactggac
      961 tgtgaattgg gcagagaact gctgaaacac ttgaaggctg gacagcaagg ggatcccagt
     1021 aaatgcctat gtcccttcag catcgctctt ctcctctctc tcacgagaat acagagattt
     1081 gaggaacagg tgtttgattt tttaaagact tccgttgtaa aaagctttaa ggatcttcag
     1141 ctcctccaag gctcaaaatt tcttcagact ctcgtccctc agagaacttg cgtttcaacc
     1201 atgatcctag aagtggtgaa gaatagtgtt catagttggg atcatgtaac tcaaggtctg
     1261 atagaatttg gtttcatctt gatggattcc tatgggccaa agaagattct tgatggaaaa
     1321 gctgttgaaa ttggctccag tctttctaaa atgacaaacc agcatgcatg taagctggga
     1381 gctgatatct tgttggaaac ctttaaaatc cacgagatga tcagacaaga aatcctggag
     1441 caagtcctca atagagttgt tactcgaacg tcctctccca tcagtcattt cttagacttg
     1501 ttttcagata tcatcatgta tgcaccttta attcttcaga gctgttccaa agtcacagag
     1561 acatttgact atttgtcctt tctgcccctc cagactgtgc aagggctgct caaggcggtg
     1621 cagccacttc tcaagatcag catgtcgatg agagactcct tgatcctcgt cttgaggaaa
     1681 gctttgtttg ccagtcagct ggatgcccgg aaatctgctg ttgctgggtt tttgctgctc
     1741 ttaaagaact ttaaagtcct aggcagcctg ccgtcctcac agtgcacgca gtctattggt
     1801 gttacacagg tgcacgtgga tgttcacagc cgatacagcg ctgtcgccaa tgagaccttt
     1861 tgcctcgaga tcatagacag cttgaaaaga tgcttggggc agcaggccga cgtccggctt
     1921 atgctttatg agggcttcta cgatgtcctt cgacggaact cgcagctggc tagttcaatc
     1981 atgcagactc tcttctcgca gttgaaacag ttctatgagc cagagcctga tctgctccct
     2041 cctctgaaac tgggagcttg cgttctgacc caaggaagtc agacctttct ccaagagccg
     2101 ctgggtcatc tgctgtcttg cattcagcat tgcttggcct ggtataagag cagagtagtt
     2161 cccctgcaac aaggagatga aggggaggag gagcaggagg aggaggagtt gtaccatgag
     2221 ctggatgaca tgttggagtc cattactatc agaatgatca agagtgagct agaagacttt
     2281 gagctggata agtcagcgga tttctctcag aacaataatg tcggcatcaa gaataacatc
     2341 tgtgcgagtc ttgtaatggg agtgtgtgag gttctaatgg aatataattt ctccataagt
     2401 aatttcagca agagtaagtc tgaggagatt ctgagcctct ttatgtgtta caagaagttc
     2461 tctgacatcc tcagtgaaaa agctggtaaa ggcaaagcca agatggccag taaggccagc
     2521 gatagtcttc tgtccatgaa gtttgtatct gatctcctca ctgctctctt cagagacagc
     2581 atccagagtc atgaagagag tctgtctgtc ctgcggtcca gcagcgagtt tatgcactat
     2641 gctttgaacg ttgctctgca gaaggtacag cagctaacac gaacagggtg cgtgagtggt
     2701 cctgacggcc agaacccaga caggatcttt cagcacctct gtgacataac tcgggtcttg
     2761 ttttggagat acacgtcaat tcctacctct gtggaggaat cagcaaagaa agagaagggg
     2821 aagagcatct cactgctgtg cttggaggct ttgcagaaga cattcagcgc cgtgctgcag
     2881 ttctatcagc caaaggtcca gcagtttctc caggctctgg atgtcatgag cacagaagaa
     2941 gaagaagcag gtgtcaccgt cactcagagg gcctcgttcc agatccggca gtttcagagg
     3001 tccttgttga atctgcttag cagccaagag gaagacttta acagtaaaga ggccctcctg
     3061 ctcgtcacag tcctctccac cttgtccaag ctgctggagc ccacgtcacc tcagtttgta
     3121 cagatgttat cctggacatc taagatttgc aaggaacaca gccaggagga tgcctcattt
     3181 tgcaagagtt tgatgagcct gttcttcagc ctgcatgtgt tatataagag tcctgtcacc
     3241 ctgcttcgtg acttgtccca ggatatccat ggacagctgg gagacataga tcaagatgta
     3301 gagatcgaga agacggacca ctttgctata gtgaatttga gaacggctgc ccccactgtc
     3361 tgtttacttg ttctgagtca ggctgagaaa gtcctagaag aagtggattg gttaatcacc
     3421 aagatcaagg gctcagtgaa ccaagagact ctgtcagatg aaatgactcc agaagatgcc
     3481 tcttctcaag cagttccacc aactgtccac attgagaaag ccatcaccat gcaactggga
     3541 acactggtta cattcttcca tgagctagtg cagacagcct tgccatcggg cagctgtgta
     3601 gacactttat taaaggacct gtccaaaata tacagcaccc tgacagcatt cgtcaaatac
     3661 tatctccagg tatgtcagag ctccagaaga attccaaaca ccgtggaaaa gctggtgaag
     3721 ctgtcaggct ctcatctgac ccctgtgtgt tactctttca tttcttatgt acaaaataag
     3781 agcagtaaca acccaaagtg cccagaaaag gagaaggctg cggttagcaa atccatggct
     3841 aaagttcttc gtgaaaccaa gccaatccct aaccttgtct ttgccattga acagtatgaa
     3901 aaatttctta tccagctgtc taaaaagtcc aaggtcaacc tgatgcagca catgaagcta
     3961 agtacatctc gggacttcaa gatcaaaggc aatgtcctag acatggttct tcgagaggag
     4021 ggggaagatg aaaacgaaga gggcactgca tcagcacata cacagcagga cagagaacca
     4081 gccaagaaga gaaggaagaa atgcctgagt taatgtgacc ttggggcatc tgcttcattt
     4141 gtgcccaaca gtaccccttg tcatacagcc tgcactgatg ttggtgtcct gttctgaaca
     4201 cactgaactg tgccttccgt tagaaggact cttctgggca ggtcctgcta cagaaaaatg
     4261 gctgcctttt gcaaaaagca catgggaaag cctgagttaa ggagcctgca ccacgccaat
     4321 gaagctccac aggagcaaat acagagcctc cagacagagc tagggtccag gctggcttcg
     4381 tttttccaag gagcctttgg tgagttcaat tatctggtaa atatccagtg cttcacctgt
     4441 aagacagtgg gaactggtta ggatccctcc agaaccatga ctgagctcgg gtcaaaaaga
     4501 cagtgggtga gagggagtat ttgagagtag ctgccacgag tggcggcttg cctttggcat
     4561 tttcagcaga tacatttttc cacataagga tgcactttgg cttatacaat aaatctttaa
     4621 acatttctgg ggtagttttg aaaa
//
