LOCUS       NM_001408910            1049 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 9, member B
            (Fam9b), mRNA.
ACCESSION   NM_001408910 XM_006257136
VERSION     NM_001408910.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000021.1.
            
            On Jul 1, 2022 this sequence version replaced XM_006257136.4.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.608113.1,
                                           SRR26643293.33216.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760389 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-71                JAXUCZ010000021.1  138554577-138554647 c
            72-214              JAXUCZ010000021.1  138549767-138549909 c
            215-278             JAXUCZ010000021.1  138548912-138548975 c
            279-313             JAXUCZ010000021.1  138548640-138548674 c
            314-431             JAXUCZ010000021.1  138546497-138546614 c
            432-531             JAXUCZ010000021.1  138545546-138545645 c
            532-630             JAXUCZ010000021.1  138545017-138545115 c
            631-735             JAXUCZ010000021.1  138542754-138542858 c
            736-1049            JAXUCZ010000021.1  138542321-138542634 c
FEATURES             Location/Qualifiers
     source          1..1049
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq36"
     gene            1..1049
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /note="family with sequence similarity 9, member B"
                     /db_xref="GeneID:100360496"
                     /db_xref="RGD:2322060"
     exon            1..71
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            72..214
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     CDS             85..738
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /note="synaptonemal complex protein 3-like"
                     /codon_start=1
                     /product="uncharacterized protein LOC100360496"
                     /protein_id="NP_001395839.1"
                     /db_xref="GeneID:100360496"
                     /db_xref="RGD:2322060"
                     /translation="MFPHGRRDPEEFESTPTEEENLTFYPFDDDFQHPSASQRSDAEE
                     LSSTSDSHGKKSPLELFTDPGEKVEVILGNIGVDINRALSAKRQRLETTARQSFAGVE
                     QKMKEVWNSHEDAMAQLNEESAQAFANLFERWDADFKKFREQYEKLVNDFQEEEKNFQ
                     QSRLIQNQRLRTIKQVHEQFLQNLEDLEKRNDDLLTGTQSELKEEINKLRRKIMKEC"
     exon            215..278
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            279..313
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            314..431
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            432..531
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            532..630
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            631..735
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
     exon            736..1049
                     /gene="Fam9b"
                     /gene_synonym="AABR07039303.2"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtattgaagc agagcgtcgg tggaaccgga ggtcttccag aaggccactg aacccgaccc
       61 gtggtgtaaa gaaaacatac aattatgttt ccccatggac gcagggaccc tgaagaattt
      121 gaaagcacac caacagagga agagaattta acattttatc cttttgatga cgactttcag
      181 caccccagtg cttcacagag gagtgatgct gaagaactga gttcaacatc tgattcacat
      241 ggaaagaaaa gtcctttaga actgtttaca gatccagggg aaaaggtaga ggttattctt
      301 ggaaatattg gagttgacat taaccgtgct cttagtgcta agagacaaag attggagaca
      361 actgccagac agtcttttgc gggagttgag cagaaaatga aagaagtttg gaactcacat
      421 gaagatgcaa tggcacagct taatgaagag tctgctcagg catttgcaaa tctgtttgag
      481 cgatgggatg cggattttaa gaaatttcga gaacaatatg agaaactagt gaatgatttt
      541 caagaggagg agaagaattt tcaacaatct agacttattc agaaccagag actgagaaca
      601 attaaacaag tacatgaaca attcttacag aatttggaag acctggagaa gaggaatgat
      661 gatctgctta ctgggacaca gagtgaactt aaagaggaaa taaataagct gcggagaaaa
      721 attatgaaag aatgttaaaa gcaggggatg gcgaatgttc atcactcttt ccagtccata
      781 ctcttttgat gggaagaata tttgaagaaa gaaattaaac tgaaacgata cagttcaagt
      841 gtcagctagg agccatgctt taagacaagt attagtataa atgataagat ctttagtcac
      901 tagtttgttt ctcttatcct ttatttagaa taaaatccag ttgttagtat caactattac
      961 tgtatgtcaa ggatttacct cttttgtaat acagtgaatt cttctttatg acactgtgga
     1021 gatttttcaa taaaaatgat taaaggttg
//
