LOCUS       NM_001014073            2686 bp    mRNA    linear   ROD 12-JUN-2024
DEFINITION  Rattus norvegicus family with sequence similarity 98, member A
            (Fam98a), mRNA.
ACCESSION   NM_001014073 XM_233872
VERSION     NM_001014073.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2686)
  AUTHORS   Akter,K.A., Mansour,M.A., Hyodo,T. and Senga,T.
  TITLE     FAM98A associates with DDX1-C14orf166-FAM98B in a novel complex
            involved in colorectal cancer progression
  JOURNAL   Int J Biochem Cell Biol 84, 1-13 (2017)
   PUBMED   28040436
REFERENCE   2  (bases 1 to 2686)
  AUTHORS   Fujiwara,T., Ye,S., Castro-Gomes,T., Winchell,C.G., Andrews,N.W.,
            Voth,D.E., Varughese,K.I., Mackintosh,S.G., Feng,Y., Pavlos,N.,
            Nakamura,T., Manolagas,S.C. and Zhao,H.
  TITLE     PLEKHM1/DEF8/RAB7 complex regulates lysosome positioning and bone
            homeostasis
  JOURNAL   JCI Insight 1 (17), e86330 (2016)
   PUBMED   27777970
  REMARK    Publication Status: Online-Only
REFERENCE   3  (bases 1 to 2686)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   4  (bases 1 to 2686)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Mar 12, 2021 this sequence version replaced NM_001014073.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC089217.1, SRR26643291.17258.1
                                           [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            CDS uses downstream in-frame AUG :: upstream AUG and CDS extension
                                                is not conserved
            RefSeq Select criteria           :: based on conservation,
                                                expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-122               JAXUCZ010000006.1  25626108-25626229
            123-271             JAXUCZ010000006.1  25630045-25630193
            272-406             JAXUCZ010000006.1  25633040-25633174
            407-591             JAXUCZ010000006.1  25636570-25636754
            592-672             JAXUCZ010000006.1  25637740-25637820
            673-789             JAXUCZ010000006.1  25638400-25638516
            790-957             JAXUCZ010000006.1  25638787-25638954
            958-2686            JAXUCZ010000006.1  25639039-25640767
FEATURES             Location/Qualifiers
     source          1..2686
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q12"
     gene            1..2686
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /note="family with sequence similarity 98, member A"
                     /db_xref="GeneID:313873"
                     /db_xref="RGD:1305486"
     exon            1..122
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     CDS             70..1617
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /codon_start=1
                     /product="protein FAM98A"
                     /protein_id="NP_001014095.1"
                     /db_xref="GeneID:313873"
                     /db_xref="RGD:1305486"
                     /translation="MECDLMETDILESLEDLGYKGPLLDDGALLQAVSAGAASPEFTK
                     LCAWLVSELRVLCKLEENVQATNSPSEAEEFQLEVSGLLGEMNCPYPCLTSGDVTKRL
                     LVQKNCLLLLTYLISELEAARMLCVNAPPKKAQEGGGSEVFQELKGICIALGMSKPPA
                     NITMFQFFSGIEKKLKETLAKVPPNHVGKPLLKKSMGPAHWEKIEAINQAIANEYEVR
                     RKLLIKRLDVTVQSFGWSDRAKSQTEKLAKVYQPKRSVLSPKGNISIAHLLAARQDLS
                     KILRTSSGSIREKTACAINKVLMGRVPDRGGRPNEIEPPPPEMPPWQKRQDGPQQQAG
                     GRGGGRGGYEHSSYGGRGGHEQGGRGGRGGYDHGGRGGGRGNKHQGGWTDGGSASGGG
                     YQDGGYRDPGFQPGGYHGGHSSGYQGGGYGGFQTSSYTGSGYQGGGYQQDNRYQDGGH
                     HGERGSGRGGRGGRGGRGGRGSQGGGWGGRGSQTYHQGGQFEQHFQHGGYQYSHSGFG
                     QGRHYTS"
     exon            123..271
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     exon            272..406
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     exon            407..591
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     exon            592..672
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     exon            673..789
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     exon            790..957
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
     exon            958..2686
                     /gene="Fam98a"
                     /gene_synonym="RGD1305486"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atgcgcgagt gtacgcgttg ccggcgagag ggcagcctga cgactcggaa atttgaatac
       61 cacagtagca tggagtgtga cctcatggag actgacatct tggagtcgtt ggaagatcta
      121 ggttacaagg gcccattgtt ggatgatggt gcactgttgc aggccgtctc tgctggagcc
      181 gcttcccctg agtttaccaa actctgtgct tggctggtgt ctgaattaag agtcctctgt
      241 aaactagaag aaaatgtgca ggcaactaac agtccaagtg aagctgaaga attccagctt
      301 gaggtgagtg ggctacttgg ggagatgaac tgcccatatc cttgtctgac atctggggat
      361 gtgaccaagc gccttcttgt tcagaagaac tgcctccttt tgctcacata cctcatctca
      421 gaactagaag ctgccagaat gctctgtgtg aatgctcctc caaaaaaagc tcaagaagga
      481 ggcggtagtg aggtctttca agagttgaaa ggcatatgta ttgctctagg aatgtccaaa
      541 cctccagcca atataactat gttccaattc ttcagcggga ttgagaaaaa attaaaggaa
      601 acattagcaa aagttccacc taatcatgtg ggaaagccgc tattgaagaa gtcgatggga
      661 ccggcccact gggaaaagat agaagccatt aaccaagcca tagccaatga atatgaagtt
      721 cggaggaagc tgctaatcaa acgtttggat gtcactgtcc agtcctttgg ctggtctgac
      781 agagctaaga gtcaaacaga aaaattagct aaggtttacc agccaaagcg ttcagtcttg
      841 tctcccaaag gtaatatttc cattgctcat cttttggccg ccagacaaga cttgtcaaag
      901 attttaagga caagcagtgg gtccataaga gaaaagactg cctgtgccat taataaggtg
      961 ctgatgggca gggtgcctga cagaggtggc agacctaatg aaattgagcc tccgccccca
     1021 gagatgccac cgtggcagaa gagacaagat ggcccccagc agcaagcagg aggccgaggc
     1081 ggagggagag gtggttatga acattcctca tatggaggac gaggaggtca tgaacaagga
     1141 gggcgaggtg gacgtggtgg ctatgaccac ggtggccgag ggggaggaag aggaaataag
     1201 caccaaggag gctggacaga cggaggtagt gcaagtggag gtggctacca ggatggcggt
     1261 tatcgagatc cgggcttcca gcctggtggc tatcatggtg gccacagcag tggctaccaa
     1321 ggtggtggct atggtggttt ccaaacatct tcatatacag gaagtggata ccagggtggt
     1381 ggctaccagc aggacaatag ataccaagat ggcgggcacc atggcgaacg aggcagtggt
     1441 cgtgggggca gaggtggtcg aggaggtcgg ggaggacgtg gaagccaggg aggaggctgg
     1501 ggaggaagag ggagccagac ttatcaccaa gggggccagt ttgaacagca cttccaacat
     1561 ggaggctatc agtatagtca ttctggattt ggacaaggaa gacattatac tagttgaggc
     1621 tacagacaca ttttgctaga gctcaagtaa tagaaactta gtttcagaat ctgaatccaa
     1681 catctatttc gaatgaatgt aagaccacag gtggcaggca tacttctgct taggataacc
     1741 atttgccggt cttcattcag ttctttctct ctttttatta ctaaacagtt ttacataaca
     1801 ctgtttattt aagaagcata tctcgtcttt ctatgaaaaa caaatcttaa aggcaatttc
     1861 agttgccttt aattgaccag tagactaatc cagttgaaac atacatgctt ttttgaagaa
     1921 attacttgaa taaaatagtt ttcacatttt caatatgcaa gttttaaaaa tgaggatttg
     1981 cctagacttt ttttatattt actgctggga aaccttcctc attaacaacc catgtgtgtt
     2041 ttcgtaaact attctcccag catagctctg ccctgattgg cattttgtcc agagaaattt
     2101 cgtcaccttt ctttctggta gacctgttgg gttggttcct attacgtgag ctcttttgca
     2161 gatagcacat tcagtagcct tatcctgtgg gtggaatact ataccatatg ctcctccaaa
     2221 atccacgaac acggccaaat ccatgaacac gacaaaagca aactaagttg tgaaccgtag
     2281 tacctgtagg cacttagtta agtatagcaa ctcaaacaga cctgcatcca tccaagacaa
     2341 aagtccctcc ttcaaccttg tttttacttg aaattcgcta gaagaaaggg tgagcagaca
     2401 tgtgttttat gcactagtta caaatacaag ttggcttgct ttacacaaga gacccttctt
     2461 gtgacggaag tgcactacga agtgagatcg agtcctgctc agtgcaggag gcccttcatt
     2521 attgctgcag aagacagaag cctggctgag tcaccctcca cgtctatact gaagtcactc
     2581 gatgcttctg ccgggttttt gtacatgtaa acactgtcaa gctgtgaaag aaagtagctg
     2641 gaggtgtgtt tgtgtgagag gtgagcaata aattcattgt acattc
//
