LOCUS       NM_001401220            3647 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 76, member B
            (Fam76b), transcript variant 3, mRNA.
ACCESSION   NM_001401220 XM_006242529
VERSION     NM_001401220.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3647)
  AUTHORS   Salichs,E., Ledda,A., Mularoni,L., Alba,M.M. and de la Luna,S.
  TITLE     Genome-wide analysis of histidine repeats reveals their role in the
            localization of human proteins to the nuclear speckles compartment
  JOURNAL   PLoS Genet 5 (3), e1000397 (2009)
   PUBMED   19266028
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Feb 4, 2022 this sequence version replaced XM_006242529.3.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643299.33745.1,
                                           SRR26643288.32751.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-318               JAXUCZ010000008.1  18971537-18971854
            319-383             JAXUCZ010000008.1  18972555-18972619
            384-438             JAXUCZ010000008.1  18973495-18973549
            439-594             JAXUCZ010000008.1  18974568-18974723
            595-794             JAXUCZ010000008.1  18976633-18976832
            795-842             JAXUCZ010000008.1  18979871-18979918
            843-923             JAXUCZ010000008.1  18980071-18980151
            924-1059            JAXUCZ010000008.1  18980815-18980950
            1060-1161           JAXUCZ010000008.1  18983693-18983794
            1162-3647           JAXUCZ010000008.1  18987599-18990084
FEATURES             Location/Qualifiers
     source          1..3647
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q12"
     gene            1..3647
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /note="family with sequence similarity 76, member B"
                     /db_xref="GeneID:367021"
                     /db_xref="RGD:1311077"
     exon            1..318
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     CDS             232..1251
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /note="isoform 2 is encoded by transcript variant 3"
                     /codon_start=1
                     /product="protein FAM76B isoform 2"
                     /protein_id="NP_001388149.1"
                     /db_xref="GeneID:367021"
                     /db_xref="RGD:1311077"
                     /translation="MAASALYACTKCTQRYPFEELSQGQQLCKECRIAHPIVKCTYCR
                     SEFQQESKTNTICKKCAQNVKQFGTPKPCQYCNIIAAFIGTKCQRCTNSEKKYGAPQT
                     CEQCKQQCAFDRKEEGRRKVDGKLLCWLCTLSYKRVLQKTKEQRKSLGSSHSNSSSSS
                     LTEKDQHHSKHHHHHHHHHHRHSSGHHKVSSLSPEQEQGLWKQSHKSSAAIQNETPKK
                     KPKLESKPSNGDSSSINQSADSGGTDNFVLISQLKEEVMSLKRLLQQRDQTILEKDKK
                     LTELKADFQYQESNLRAKMNSMEKAHKETVEQLQAKNRELLKQVAALSKGKKFDKSGS
                     VLTSP"
     exon            319..383
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            384..438
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            439..594
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            595..794
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            795..842
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            843..923
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            924..1059
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            1060..1161
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
     exon            1162..3647
                     /gene="Fam76b"
                     /gene_synonym="RGD1311077"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ggaatccaca gccttgctcc cgcttcgtct ccctccgcca cggtccgggc ctaagctgga
       61 gcggcggggc gggcggtagt aggtgtcccg ggacggcgtc ggaggcggag ggggacgcag
      121 ggggcccggc agttgccagg ccggggccgc agcggcagaa gagcccgcgg gcggggcagc
      181 cgagttcccg gaggccccgc ctgagcgcgc gcggaggagc cggaaagcag gatggcggcg
      241 tcggccctgt acgcctgcac caagtgcacg cagcgctacc ccttcgagga gctatcgcag
      301 ggccaacagc tctgcaagga atgtcggatt gcacatccta ttgtaaaatg tacttactgc
      361 agatcagaat ttcagcagga gagcaaaact aacacaattt gtaagaagtg tgctcaaaat
      421 gtcaaacagt ttggaacacc taagccttgt cagtactgta acataattgc agcatttatt
      481 ggtaccaagt gtcagcgttg tacaaattca gaaaaaaaat atggagcacc tcaaacctgt
      541 gaacagtgca aacagcagtg tgcttttgat cggaaggagg aaggaagaag aaaagtggat
      601 gggaagttac tgtgttggct ctgcacctta tcatacaaga gggttttaca gaagacaaaa
      661 gaacagagga agagtttggg gtcttcacat tccaattcct catcttcatc tcttactgag
      721 aaagaccagc accattcaaa acaccatcac caccaccacc atcaccacca tcgccacagc
      781 agtggccacc acaaagtcag cagtctaagt cctgagcagg agcagggact gtggaaacag
      841 agccataaat cctctgcagc aattcagaat gaaactccaa agaaaaagcc caaactggaa
      901 tctaagccat ctaatggaga tagtagctct ataaatcagt cagcagatag tgggggaaca
      961 gacaattttg tccttatcag tcaactgaaa gaagaagtga tgtcacttaa gcgtctctta
     1021 cagcagagag accagaccat tttggaaaaa gataaaaagt taaccgaact gaaggcagac
     1081 tttcagtacc aagagtcaaa cttgagagct aagatgaaca gtatggaaaa agcacacaaa
     1141 gaaactgtgg agcagcttca ggccaaaaac agagaactac tcaaacaggt tgcagccttg
     1201 tcaaagggta aaaagtttga caagagtgga agcgtgctaa catctccttg aaaaagtcac
     1261 ttgtttagca tttctgcctg acagtgtgtg ctcgaggtgt cctatgacag acctctgtac
     1321 agtggaaaga tatttttaca tgccactaaa ttggtatgtc tcctattcac ttttataact
     1381 tacacacagc attttttaag ttgtaaacat gcagataaaa cttcagctgg tttggagtga
     1441 cttcttaatt ctttgatacc cggaactttt ttctagcaat agttgtggag tgcacgtgtg
     1501 tgcgtgcgct gtataaaatg caacatgcaa taatggagtg gtcgtcagaa cagcagcagg
     1561 ggttgtgttt tgcttttaac actatgctga tttcaaataa atagttttca atttagaaat
     1621 gcaaaacttt taaacaagga aatggtaaac actttttttg ggaattgtat ttttacttca
     1681 tatcaacatg aatttagaga atcatggtgc ttttattaaa agagcttaag agaatatgta
     1741 aatgttttta aagtgacatc actaacatca gtttagtaat caacatttca ttgctgttat
     1801 aggattgatg tttactgtac agcatccaag gtaaaatgtg tttttgtttt gtaaaaactg
     1861 tagattttta cttacaagtg cctttttgcc acctaatgtt tttatttata ggaatgctga
     1921 tcttttgtac atatggtttg tttaaaaatc atgttaataa gtgtttgtat ataagtgcat
     1981 atgtacataa ctgaatttca aaaagaaatc aaagttatta ataacatgca agattgcata
     2041 ttaagaatga actgataatg catatagact tcagatgatt ttgtggtttg ctgctgtagc
     2101 gtaaggggag ctgttggtca ttgaggtcat ttaattgtgt tggaatactt tcctaaagat
     2161 ttaattctaa ctccattttc atagagattt tatttttatg ttgtgtggct tcatgtttat
     2221 attttgtgag ttacatgttt tgctttattt ttatataaaa tttctttaaa atttataacg
     2281 tttctataac ggtccatata tctgcttttt ttataatgtg ttctaagtta atatttatgt
     2341 acaccatact tactttgtaa atttaataca aatctggaaa attaaataac tttttataat
     2401 caaatctgtg cttaagtctg aataattgaa atctataaga ttcagacact atttataaat
     2461 ttgtctcaaa agaataaaat tgtctataaa agattaagat agtgtgggat aggttctgaa
     2521 aaattacaga tcagcttctg aactctagtg gatttcagcc agtaaccaac acctgctcac
     2581 ggttagttct ggcttcaagt tgaattttaa accttcaggc actgctggcc acaccatatg
     2641 acttctttct cttaggaatg tgcagacagt tgtacttgtt tttatcagtc ccgaagggtt
     2701 tatttttaga gaaatgttta tatggttttc atagtaaaga ttagtgttaa gagtacatat
     2761 aacaattcat tttagattat tcaagtttta gtaaacttcc cacagtacat tactacaagc
     2821 gaaaggaaat cttcaagttc agaaacacgt cattttcaag ggacagtgcg gttgaattag
     2881 tctgccgtca tgaggcctca gaagcacctt catttaactg ttctgaactt tggtaggtaa
     2941 cgccttactg tgggtggtca ttgtttgcag gatttgctgc atccataaag tagtcattac
     3001 attgctttaa gttttgttat gatttatatt acagtttcct ggccattttt caatccacag
     3061 tagtcacaat tctaaatgaa ctatagtagt tctaatacct tgctggagac agtagaaacg
     3121 gtatctcccc attcccttat tagtggacgt ggaaattgaa aatcagttta aaatagtgaa
     3181 gctttgtaaa gtgcaaggta aaactaaaat ttagggcttt acagtattca gccctagact
     3241 attattccat gactatttta taacttaatt tgtttttgca attgtataaa taagtcattg
     3301 agtctcagtc ccaagtctgt agtgtgttgc tctaatgagt tgatctctgt gaacgtgggc
     3361 ctgtgcagag gtactgtggt gtgctgtagt gtgctctagc ctgtttgctg caggtagcac
     3421 atcccagtga gggtcatatg ggctccagtt tatcatgtat gaatagcctg tgaatattac
     3481 agtcattttt tagagtatat tggtctaaat atgcatttta cgatgaatgt gttaagctgg
     3541 tcacatgtat agattaacaa aatactgtac ctgtacacat ctgactgttg acattttgta
     3601 ctttttttct aagccaacat ttcacaataa aaatacacca aaagctt
//
