LOCUS       NM_001170573            1334 bp    mRNA    linear   ROD 20-MAR-2023
DEFINITION  Rattus norvegicus family with sequence similarity 50, member A
            (Fam50a), mRNA.
ACCESSION   NM_001170573 XM_001055598 XM_215220
VERSION     NM_001170573.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1334)
  AUTHORS   Baltz AG, Munschauer M, Schwanhausser B, Vasile A, Murakawa Y,
            Schueler M, Youngs N, Penfold-Brown D, Drew K, Milek M, Wyler E,
            Bonneau R, Selbach M, Dieterich C and Landthaler M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            FM034155.1 and BC168887.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ229851.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-440               FM034155.1         5-444
            441-1334            BC168887.1         34-927
FEATURES             Location/Qualifiers
     source          1..1334
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq37"
     gene            1..1334
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /note="family with sequence similarity 50, member A"
                     /db_xref="GeneID:293862"
                     /db_xref="RGD:1560964"
     exon            1..238
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     CDS             128..1147
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /note="protein FAM50A-like"
                     /codon_start=1
                     /product="protein FAM50A"
                     /protein_id="NP_001164044.1"
                     /db_xref="GeneID:293862"
                     /db_xref="RGD:1560964"
                     /translation="MAQYKGAASEAGRAMHLMKKREKQREQMEQMKQRIAEENIMKSN
                     IDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALVKEREKQLAKKEQSKELQLKLE
                     KLREKERKKEAKRKISSLSFTLEEEEEGGEEEEEMAMYEEELEREEITTKKKKLGKNP
                     DVDTSFLPDRDREEEENRLREELRQEWEAKQEKIKSEEIEITFSYWDGSGHRRTVKMK
                     KGNTMQQFLQKALEILRKDFSELRSAGVEQLMYIKEDLIIPHHHSFYDFIVTKARGKS
                     GPLFNFDVHDDVRLLSDATVEKDESHAGKVVLRSWYEKNKHIFPASRWEPYDPEKKWD
                     KYTIR"
     exon            239..323
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            324..423
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            424..569
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            570..646
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            647..713
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            714..775
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            776..852
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            853..907
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            908..956
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            957..1027
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            1028..1138
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
     exon            1139..1311
                     /gene="Fam50a"
                     /gene_synonym="RGD1560964"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 cgtcacgtat cagctgacta aattgctgcc gccacggacg tcgccttcac tgccaggact
       61 tcttcaggcg aaagtcactg ttgccgctgt tgctgccgcc gccgccactg aaaccaccgc
      121 tgccaccatg gctcagtaca agggcgctgc aagtgaggcg ggacgtgcca tgcacctaat
      181 gaagaagaga gagaagcagc gtgagcaaat ggagcagatg aagcagagga ttgcagagga
      241 gaacataatg aaatctaaca ttgacaagaa gttctctgca cactatgatg ctgtggaagc
      301 agagctcaag tccagtactg tgggtcttgt gaccctgaat gacatgaagg ccaaacagga
      361 ggcactggtg aaggagcgag aaaagcagtt ggcaaaaaag gaacagtcaa aggagctaca
      421 gctgaagcta gagaagcttc gagagaagga gcgcaagaag gaggccaaac ggaagatctc
      481 tagcctgtcc ttcaccttgg aggaagaaga ggagggaggt gaagaggaag aagagatggc
      541 catgtatgag gaagaactgg agagggaaga gatcaccaca aagaaaaaga aattggggaa
      601 gaaccctgat gtggatacaa gcttcttgcc tgaccgggat cgggaggagg aggagaatcg
      661 gcttcgggaa gagctgcgcc aggaatggga agccaagcaa gaaaaaatca agagtgaaga
      721 gattgaaatc acctttagtt actgggatgg ctctgggcac cggcgcactg ttaagatgaa
      781 gaagggcaac accatgcagc agttcctgca gaaagcacta gagatcttgc ggaaagactt
      841 cagtgagctc aggtcagcag gagtggaaca gctcatgtac atcaaggagg atttaatcat
      901 cccccatcat cacagcttct atgacttcat tgttaccaag gcgcgaggaa aaagtgggcc
      961 actcttcaac tttgatgttc atgatgatgt tcgactgctc agtgatgcca ctgtggaaaa
     1021 ggatgagtca catgcaggca aagtggtgct gaggagctgg tatgagaaga acaaacacat
     1081 ttttcctgct agtcgctggg agccctatga cccagagaag aaatgggaca agtacacgat
     1141 ccggtgagca tccaaaagtg ggcatgacct tggctctctc cagcgtgtcc ccatgtctcc
     1201 agggctccag gtgaccatgg cagagcactc tgggagtatg gtagttgcta ttccctgact
     1261 tgatgttgtc attactgctt ttccctttta caataaaaaa gttcacatgt taaaaaaaaa
     1321 aaaaaaaaaa aaaa
//
