LOCUS       XM_039082666            2238 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus family with sequence similarity 240
            member A (Fam240a), transcript variant X1, mRNA.
ACCESSION   XM_039082666
VERSION     XM_039082666.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051343.1) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039082666.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2238
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..2238
                     /gene="Fam240a"
                     /note="family with sequence similarity 240 member A;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 2 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     1 sample with support for all annotated introns"
                     /db_xref="GeneID:120094266"
                     /db_xref="RGD:7555836"
     CDS             1066..1308
                     /gene="Fam240a"
                     /codon_start=1
                     /product="protein FAM240A isoform X1"
                     /protein_id="XP_038938594.1"
                     /db_xref="GeneID:120094266"
                     /db_xref="RGD:7555836"
                     /translation="MEGMNNQYVRREVFCRNTCHELKRFWEREIGKQTCYRESEEHRL
                     GRSALRKLREEWKQRLETKLRLRNNPDEAEKQTNVS"
ORIGIN      
        1 taatagtatt tatttattta tttaaaaaca gtgtgtatca tataccccac gcaagccggc
       61 atccccagcg ttttgtcctg attccgtgat cactggcgcc attgctctca caccctcata
      121 agcatgttca gaaacacagt cgtggtttga tgatagccca agctgtgttt atcctcagac
      181 aagaataccc aagacgttca actcaaaaat acaacaatga agaggggctg gggtgggatg
      241 gctcaggggt tacctgtgct agctgcctct gtgcaggacc tgagttcagg ctccagcatc
      301 tatgtcagat agctcagtac tccaggggtg acaaggtcct ctcctggcct ccgaaggaag
      361 ctgagcactg gcagtcttca ctcacacaga cacacaccca taaatagaaa cgaaataaac
      421 cttaatgaac tgaaaagcca cgaaggacaa tttcaaccaa gaggtccttc tcgctttggt
      481 tcatttgacc gggagacaac cactggtgcc agccctgctc acattggggg gacaactacg
      541 cagatcttgg tccacggatt aagggctttc aaagaacacc atggctctgt aagtcatcct
      601 gtaaggtgac cccaaactgt agctcagcat gacagccaga gctcctgtac ccctagagag
      661 gaggcagctt tgcctgccgc cccgaggatt cctgttcaca cataatccac accatgttct
      721 gaacatcagc tccatatcca gccaagtcat ggcctctgca ggcctgccag ggctgaagct
      781 tgcctggtgg gcagtgggat cagagaatgg ggaccatttt tcatcaggaa taaggccacc
      841 ttgtcatctc cgcactctgc tgctaattgg tacctgtaac cttgacaggc ccaggagctc
      901 ctgtagctct cccacttagt gtataaaagg cagagaccct gagggttcag aacccagtgg
      961 tgacctctgc ggcagagccg agggaggagg gctgtggcat ttgctggctc taaaccatat
     1021 cagacggcca cagactcatc tcagaggtaa aagacgtcaa atgtgatgga ggggatgaac
     1081 aatcagtacg tccgtcgaga ggtcttctgt aggaacacct gccacgaact caagcggttc
     1141 tgggagaggg agatcggcaa gcagacgtgc tacagagagt ctgaggagca ccgcctggga
     1201 aggagcgcgc tgagaaaact cagggaagaa tggaagcaga ggctggagac gaagctgagg
     1261 ctgaggaaca acccagatga ggctgagaag cagacaaatg tcagctgagg gctcccgcag
     1321 ccccgaccag ggcaccggag gtcactccgc tagaagccag ttgaacccca agcccctctg
     1381 cttgcacatc cttccctaat gccccatggc agctgcttgc caagtcttcc tctctgcatg
     1441 gaagtcaggc tactactccc aacgcctctg aacgtgagct tgtttaatat caaggggttt
     1501 gttttcatat cactcccctc tagctttaaa atacttgtgt tttaaagtac gagcatacca
     1561 gaagggtgca catcagaagg ggttccaatc ttcctggtct tactttaagc attgccccac
     1621 cgtttcaccc aggaaacatc actacatgaa atctgttctc gtatttccct ttgaagagaa
     1681 gagcccatct acaggaacag tagcaccagt agtcataaca taaggcttgc gaaaaaccag
     1741 cctctgtgtg aactcatgaa ccatgtctct caataaaata tggaaataat tttaataaac
     1801 tcagtcgtgt gctagtccgt gagcactctc ttctatgtac gcatttggtg ggatctccac
     1861 gagtttgcac tggttaactt ccagtctgtt agctcaacca agctggtgtc aggccacacc
     1921 aagggtgctt agcacacagg tgctagactc ggaagtggca ttgtcactcc gtctcttggg
     1981 tccagaattg taagggtcac catcaatgac aatgcagtgg taactgggtc tgggaaacct
     2041 ttttttttgt tttttggttt tttttgtttt tgtttttgca cagaggaaaa gaggagagag
     2101 attcatgatt gttgtatatg agacctgtaa gtctttaaac acagggctaa ttcaactggt
     2161 aaacagaaaa gcaattccct ggtcacatat gcatttatta ctattattat tgttgttgtt
     2221 gttgttgttg ttgctacc
//
