LOCUS       NM_001014074            1502 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 228, member A
            (Fam228a), mRNA.
ACCESSION   NM_001014074 XM_233949
VERSION     NM_001014074.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000006.1.
            
            On Mar 12, 2021 this sequence version replaced NM_001014074.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC083643.1, SRR26360181.1227410.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-284               JAXUCZ010000006.1  33469254-33469537   c
            285-391             JAXUCZ010000006.1  33468883-33468989   c
            392-460             JAXUCZ010000006.1  33459597-33459665   c
            461-649             JAXUCZ010000006.1  33458124-33458312   c
            650-737             JAXUCZ010000006.1  33456799-33456886   c
            738-912             JAXUCZ010000006.1  33456508-33456682   c
            913-1057            JAXUCZ010000006.1  33451552-33451696   c
            1058-1194           JAXUCZ010000006.1  33448547-33448683   c
            1195-1502           JAXUCZ010000006.1  33447427-33447734   c
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="6"
                     /map="6q14"
     gene            1..1502
                     /gene="Fam228a"
                     /note="family with sequence similarity 228, member A"
                     /db_xref="GeneID:313936"
                     /db_xref="RGD:1359275"
     exon            1..284
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            285..391
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     CDS             299..1219
                     /gene="Fam228a"
                     /note="UPF0638 protein C2orf84 homolog"
                     /codon_start=1
                     /product="protein FAM228A"
                     /protein_id="NP_001014096.2"
                     /db_xref="GeneID:313936"
                     /db_xref="RGD:1359275"
                     /translation="MADTKSSNCNEHFSVEKLKEWPEPESVSLMKELAREDIDEAVHA
                     ILFRENYIVKKLDTYLQHEAVFKERRKEMLHKKWVENVAQPLQQRIIEKLFSYRRPGK
                     SQVKYEYCLKHTNEPTKPSPLCECLFQKQQALREAKGPSYHRGRGKQPGIQKEAKETE
                     KGLLFTRSPQFPLRSHCTVPRDRQRLHARFVQNKPCGRNKYKGAGSEKVSYALKPHLP
                     KEEKKTVNRSQLGFERQFHASKLSQQNKGAEKKGLALGTRAQRPRSWAAADSPQGTPL
                     VGRRVMTAEILGKHLASLQQASRAVYSNSP"
     exon            392..460
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            461..649
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            650..737
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            738..912
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            913..1057
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            1058..1194
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
     exon            1195..1502
                     /gene="Fam228a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcaatgtgaa cagggcagcc accagcggga gagtaggtca gccctgaggc aacctgggag
       61 gcctgtaggc ctgaggtgat cagtgaccct cacatgagcg tccaactgtt gggaggggaa
      121 gcctgtgtcc tgctgtgacc agcgaacagc gctgggagta tcggtctgag aggaggcctg
      181 tgggcctgaa gtaaccagtc agcagcgcag gagtaaccat ctggggaggc ttgtgggacc
      241 taaggtggag ccaccagcgc aagagcttcc gtctgaggcc taagggattc tactacttat
      301 ggctgacaca aaatcttcca actgtaatga acatttcagt gtggagaaac taaaggaatg
      361 gccagagcca gagtctgttt ctctaatgaa ggaattagct agagaagaca tcgacgaagc
      421 tgtgcatgca atcttgttta gggaaaacta cattgtgaag aagttggata catatttaca
      481 gcacgaggct gtctttaagg aaagaaggaa agagatgctg cataagaaat gggttgaaaa
      541 tgtggcacag ccccttcagc agagaatcat agaaaaatta ttttcatata gaagacctgg
      601 aaaaagtcaa gtgaaatacg aatactgctt aaagcacaca aatgaaccga ccaaaccatc
      661 tccattgtgt gaatgtctgt ttcaaaaaca gcaagcgctc agagaagcaa agggacccag
      721 ttaccaccgt ggcagaggaa aacagcctgg catacaaaaa gaagccaaag aaactgagaa
      781 gggtctcctc ttcaccagat caccccagtt cccgctcagg tcccattgca ccgttcccag
      841 agacaggcag agacttcatg cacgattcgt gcagaataag ccttgtggca gaaacaagta
      901 caagggagcc ggttctgaaa aggtgagcta tgcgttaaag ccccatctgc ctaaggagga
      961 gaagaagact gttaatcgaa gccagcttgg ttttgaaagg cagttccatg cctcaaagct
     1021 cagccagcag aacaaagggg ctgaaaagaa gggcctggct ttagggaccc gagcacagag
     1081 accacgctcc tgggcggcag cagacagtcc gcaggggaca ccacttgtgg gaagaagagt
     1141 gatgacagct gagatcctgg ggaagcatct ggcctccttg cagcaggcat ccagggctgt
     1201 ctacagcaac tcgccctgac gtcagctgca ccttcagaac caacagacac gctccccgaa
     1261 cccaggaagg ctggcgctgg ttcgctcaac aggctgtgcc tgcttcttca gagctccctg
     1321 gagataagca ggatgctggt tgtttcagtt ttgtgtacca agtaaaggct cttttctggg
     1381 gtgctggggt cagtatctgg atcagtaagg gatgggtctt taaaagcgat ctcaatacac
     1441 tgaattgtat cctcagttga ttcagccatg attatattta aataaaagtg gggagaatgg
     1501 aa
//
