LOCUS       XM_039089395            3777 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FAM20C, golgi associated secretory
            pathway kinase (Fam20c), transcript variant X1, mRNA.
ACCESSION   XM_039089395
VERSION     XM_039089395.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051347.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039089395.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3777
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="12"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3777
                     /gene="Fam20c"
                     /gene_synonym="RGD1311980"
                     /note="FAM20C, golgi associated secretory pathway kinase;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 36 ESTs, 2 long SRA reads, and 100%
                     coverage of the annotated genomic feature by RNAseq
                     alignments, including 130 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304334"
                     /db_xref="RGD:1311980"
     CDS             1425..2810
                     /gene="Fam20c"
                     /gene_synonym="RGD1311980"
                     /codon_start=1
                     /product="extracellular serine/threonine protein kinase
                     FAM20C isoform X1"
                     /protein_id="XP_038945323.1"
                     /db_xref="GeneID:304334"
                     /db_xref="RGD:1311980"
                     /translation="MKMILVRRFRVLILVVFLLACALHIAVDLLPKLDRRATRSPGEP
                     GCSCAQPAAEAAGPGWAQARSRPGESAGGDAGWPNKHTLRILQDFSSDPASNLTSHSL
                     EKLPPAAEPVDHAPRGQELGSPPPRDSAHRPLLRDPGPGPRVPPHGPRGDGSLLAKLF
                     EHPLYQGAVPPLTEGDVLFNVNSDIRFNPRAAENPDWPLEGAEGAEFLPTGEAAVDLY
                     PNWLKFHIGINRYELYSRHNPAIDALLHDLGSQKITSVAMKSGGTQLKLIMTFQNYGQ
                     ALFKPMKQTREQETPPDFFYFSDYERHNAEIAAFHLDRILDFRRVPPVAGRMINMTKE
                     IRDVTRDKKLWRTFFVSPANNICFYGECSYYCSTEHALCGKPDQIEGSLAAFLPDLSL
                     AKRKTWRNPWRRSYHKRKKAEWEVDPDYCEEVKQTPPYDSGHRILDIMDMTVFDFLMG
                     LGSTHTMSFPF"
ORIGIN      
        1 ggttgggctt cggtggaaat ctgcaggtgc ttgaagccag gaggtctgct cagcttgtgg
       61 atctgtgggt gaccctctca ggattacctt cccagaattt taaacggaaa ttcccatgga
      121 ttcctacttc ctactagggg ttggggatcc agaagccctg tggccgcaga tgaagccacg
      181 tggtggaagc agatctctct ttagtgcgca ccccgattta gcatcccaga gggctggcag
      241 cgagacgcgc cccgcccacc gcccgcgcat ccgtgtcact cagccaggcc cggcgcagcg
      301 ccgctagggt taaggcgcag gcgtgtcccc tggggtgggg tgggcccggc agccttgccg
      361 agcttctggc gtcccctcgg attggggccc actcccccgc cgttttctcc gccgcgtggc
      421 aacgtcgtcc cttcgtcctc cacctagcgg gctgcgggaa cccgaggtgt caggacaccg
      481 cccggagggg agctcgtccg gccgcgcaga cgccccgcgg gctccgggga gggacttggc
      541 ctgctttctg gtctccagtc gccggggagg agtcgtgcgg ctgcagctgg cggcgcacgg
      601 agcttcaggg acgtaggcga ccaggccgag agccgcgcgc acagggccgg agccctcgct
      661 gcctgcaggt tcccagcccg gcctctccgg ctcccggctc ggcgagcgcc gaggaggcgc
      721 ggcgacaccg cggggcgcgg ccaaggggag gagagagcgg agcgcgggct agcgcccggc
      781 cggccgggcc tcgcggggcc acggctccgc caatctgcgg gcgctgacgc ggggggcggc
      841 tccggcgcgc tcggatatca gcgggccggg cgcggggcgc ctggagctcg gaggtgcggg
      901 cgctgcgctc cgggtcggcc ggctgcacct gccagatctc cgcttctccc tgcgcgcccc
      961 ctcgcgctcc ccttctcacc tcggtctctc agccactacc tgacagcgca gaggaatcgc
     1021 tttgttgccc gcccagcacc aggcatggcc cagcgggagc accacgctct ggatcggctc
     1081 agtcgcgccc tggcggggat gaacagccgc gccttctgct tacacgccca atgagtgtgg
     1141 tcgccgtccc ggagactctc gtccgcctct gctttctctg tcaccactgc cacccactcc
     1201 accgacgagt gtcactggcc gacccccgag atggcctgga gagccggtgc tttggtggcg
     1261 ggtgtcctcc acgacgtcca aatctgggga cagcccccga gctggtagct gcttgtacac
     1321 cgaatggacc ttgacccgcg agtcgttgcc ggcttggtgc caagctgagg ggcaccggtg
     1381 gagcgcgcgt ccggaacccc ccaagcccgc tggcctgcgc ggtcatgaag atgatcttgg
     1441 tgcgcaggtt tcgcgtgctc atcttggtgg tattcctact ggcttgcgct ttgcacattg
     1501 ctgttgacct gctacccaag ctggaccggc gcgccacaag atccccgggg gagcccggct
     1561 gctcctgcgc tcagccggca gcagaggcag ctggtccagg ctgggcccag gcaaggagcc
     1621 gaccgggaga gtccgccggt ggcgacgcag gctggcccaa caaacacaca ctgcgcatcc
     1681 tgcaagactt cagctcagat ccagcctcta acctcacctc ccactccttg gagaagctgc
     1741 ctcctgcagc ggagccggtg gatcacgctc cgcggggtca ggagctgggt tccccgccac
     1801 cccgtgactc cgcgcaccgg ccgctgcttc gagaccctgg gcccggaccg cgggtgccgc
     1861 cccatggccc cagaggggac ggatcgctct tagccaagtt gtttgagcac ccactgtacc
     1921 agggggctgt acctcctctg acagagggcg acgtcctgtt taatgtgaac agcgacatca
     1981 gatttaaccc cagagcagca gagaatcctg actggccgct ggaaggtgct gaaggtgcag
     2041 aattcttgcc gactggtgag gcagcggtgg acctctatcc taactggctc aaattccaca
     2101 tcggcatcaa ccggtatgag ctgtactcca ggcacaaccc agccatcgat gccttactcc
     2161 acgacctcgg ctctcagaag atcaccagtg tcgccatgaa gtcagggggc acgcagctga
     2221 agctcatcat gaccttccag aattacgggc aggcgctatt caaacccatg aagcagacga
     2281 gggagcagga gacgccgcct gacttttttt atttctctga ctacgagagg cacaatgcgg
     2341 agatagctgc cttccacctg gacaggatcc tggatttccg cagagtgcct ccagtggccg
     2401 gcaggatgat caacatgacc aaggagatcc gggatgtcac gagggacaag aagctatgga
     2461 gaaccttctt tgtgtctcca gccaacaaca tctgcttcta tggggagtgt tcctactatt
     2521 gttccactga gcatgccctg tgtgggaagc ctgaccagat agaaggatcc ctggcggcat
     2581 tccttcctga cctttcactg gccaagagga agacatggcg gaacccctgg cgtcgttcct
     2641 accacaagcg aaagaaggca gagtgggaag tggaccccga ttactgtgag gaggtgaagc
     2701 agactccacc ctacgacagt ggtcaccgca tcctggacat catggacatg actgtctttg
     2761 acttcctcat gggtttggga agtactcaca cgatgagctt tccattctag cacctcttca
     2821 ccagtgctgc aggatcagga ggtccaccta cctgcggctg cagctgctgg ccaaagagga
     2881 gtacaaactg agcctgctga tggccgagtc cctgcagcat gacaaggtgg cacccgtgct
     2941 ctaccagctg cacctggagg ccctggaccg gcggctgcgc atagtgctgc aggctgtgcg
     3001 agactgtgtg gagaaggatg gtgtgagcag tgtggtggag gacgacctag ccactgagca
     3061 cagagcctcc acagagaggt agtgaccacg ctgccccgag gaaggaggag cacagagcct
     3121 atccacctgt gaattcagtg aattcggacg ggattggtca ccccccatag ggtgacctgc
     3181 agtagggagc atggggtctc cctcatggct ctgataggga tgtatgggcc tccggttcca
     3241 gcagaaacca gcattcagaa catgcagcag agtggccagc gctccgtcct tcccataggg
     3301 agggaccttt aactcactat tttgtattta acaaaaggct cacactcctg tcaatgaaga
     3361 accacccagc agaccagaga tcacctccgg gccacttcaa ggaccctctg tgatgtgatc
     3421 acactctggc cctcaatcac aatccacttt ctgctccccc cgatcctggc ctctctcaaa
     3481 ggccggagag ctctcgagag gggaggctgt gatgggcatc acggcctgtg tcggagcaga
     3541 tgggcaccca agagtgggtt ttggatgcta atgaccagct atccattgtc ggctgctaca
     3601 cagcagtcag gccttactag ttggtggtgg gcaccgcctg ccctgtgctg agctctggac
     3661 agtgggtgtc aagacactac acaaagccca tggcgccagg acagcaggct agccttggga
     3721 cctttttgtg gagtagtttg cagtgaggta acggtgcaat aaagtacagc aagcgtg
//
