LOCUS       XM_017598811            1493 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FAM20B, glycosaminoglycan
            xylosylkinase (Fam20b), transcript variant X5, mRNA.
ACCESSION   XM_017598811
VERSION     XM_017598811.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_017598811.3.
            
            On Jan 21, 2021 this sequence version replaced XM_017598811.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1493
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..1493
                     /gene="Fam20b"
                     /gene_synonym="RGD1311162"
                     /note="FAM20B, glycosaminoglycan xylosylkinase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 4 ESTs, 8 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 142
                     samples with support for all annotated introns"
                     /db_xref="GeneID:304885"
                     /db_xref="RGD:1311162"
     CDS             264..1493
                     /gene="Fam20b"
                     /gene_synonym="RGD1311162"
                     /codon_start=1
                     /product="glycosaminoglycan xylosylkinase isoform X1"
                     /protein_id="XP_017454300.1"
                     /db_xref="GeneID:304885"
                     /db_xref="RGD:1311162"
                     /translation="MKLKQRVVVLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRM
                     MTGLRVELVPKLDHTLQSPWEIAAQWVVPREVYPEETPELGAVMHAMATKKIIKADVG
                     YKGTQLKALLTLEGGQKVVFKPKRYSRDYVVEGEPYAGYDRHNAEVAAFHLDRILGFR
                     RAPLVVGRYVNLRTEVKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPACADGDMME
                     GSITLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDII
                     DTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCII
                     RVSTWNRLNYLKNGVLKSALKSAMAHDPIAPVLSDPHLDTVDQRLLNVLATIKQCTDQ
                     FGMDTVLVEDRMPLSHL"
ORIGIN      
        1 ctgcagtggc ggcggcagcg gccgggggcg gtgagcgcgg cgtggggctg cccctccccg
       61 gaggcggcgg gggcggccgg ggccgcgccg caccgcaccg cgcgggcggc tatggagcga
      121 gcctgaggcc ggctaggaac cgtggaggtg ctgcagtgaa gaaatgtgta atcatggagt
      181 ctccttgcta atcgtcgcca cctgtccccc gtgataagcc ggcagggacc agcagggacg
      241 tgggtcgagg aggagaggcc accatgaagc tgaagcagcg ggttgtggtg ttagcaatcc
      301 tgctcgtcat ttttatcttc accaaagtgt tcctgataga caatttagac acatcagctg
      361 ccaaccgaga ggaccagagg gcgtttcacc gcatgatgac cggcttgcgg gtggagctgg
      421 tgcccaagct ggaccacacc ctgcagtctc cttgggagat tgcagcccag tgggtggtgc
      481 cccgggaagt gtaccctgaa gagaccccag agctgggagc agtcatgcat gccatggcca
      541 ctaagaaaat catcaaagct gacgtgggct acaaagggac acagctgaaa gctttactga
      601 ctcttgaagg aggacagaaa gttgtcttca agcctaagcg gtacagcaga gactatgtgg
      661 tagaagggga gccatacgct ggttacgaca gacacaacgc agaggtggcg gccttccatt
      721 tggacaggat tctgggtttc cgccgagctc ccttggtcgt tggcagatat gttaacctgc
      781 gaacagaagt taagcctgtg gccacggagc agctgctcag caccttcctc actgtaggaa
      841 acaatacttg tttctatggg aagtgctact attgccgaga aacagagcca gcatgtgctg
      901 atggagacat gatggagggc tccatcacac tttggcttcc agatgtgtgg cctctgcaga
      961 agcatcggca tccctggggc aggacttacc gagagggcaa attggccagg tgggaatatg
     1021 acgagagtta ctgcgacgct gtgaagaaaa catcccccta tgactcaggc ccacgcctcc
     1081 tcgacatcat tgacacggct gtctttgatt acttgattgg caacgctgac cgccatcact
     1141 atgaaagctt tcaagatgac gaaggcgcta gcatgcttat tcttctggat aatgccaaaa
     1201 gctttgggaa cccctcgctg gatgagagaa gcatccttgc ccctctctat cagtgttgca
     1261 tcattcgggt ttcaacttgg aatagactga attatctaaa gaatggagta ctaaagtctg
     1321 ccttaaaatc tgccatggcc catgacccca tcgcccctgt gctctccgat ccacacttgg
     1381 acactgtgga ccagcggctt ctgaatgtcc tggccaccat caagcagtgt accgaccagt
     1441 ttgggatgga tactgtgctg gtggaagaca ggatgcctct ctcccacttg taa
//
