LOCUS       XM_008769634            5642 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FAM20B, glycosaminoglycan
            xylosylkinase (Fam20b), transcript variant X2, mRNA.
ACCESSION   XM_008769634
VERSION     XM_008769634.3
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051348.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_008769634.4.
            
            On Jan 21, 2021 this sequence version replaced XM_008769634.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5642
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="13"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5642
                     /gene="Fam20b"
                     /gene_synonym="RGD1311162"
                     /note="FAM20B, glycosaminoglycan xylosylkinase; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 54 ESTs, 2 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 216 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:304885"
                     /db_xref="RGD:1311162"
     CDS             804..2033
                     /gene="Fam20b"
                     /gene_synonym="RGD1311162"
                     /codon_start=1
                     /product="glycosaminoglycan xylosylkinase isoform X1"
                     /protein_id="XP_008767856.1"
                     /db_xref="GeneID:304885"
                     /db_xref="RGD:1311162"
                     /translation="MKLKQRVVVLAILLVIFIFTKVFLIDNLDTSAANREDQRAFHRM
                     MTGLRVELVPKLDHTLQSPWEIAAQWVVPREVYPEETPELGAVMHAMATKKIIKADVG
                     YKGTQLKALLTLEGGQKVVFKPKRYSRDYVVEGEPYAGYDRHNAEVAAFHLDRILGFR
                     RAPLVVGRYVNLRTEVKPVATEQLLSTFLTVGNNTCFYGKCYYCRETEPACADGDMME
                     GSITLWLPDVWPLQKHRHPWGRTYREGKLARWEYDESYCDAVKKTSPYDSGPRLLDII
                     DTAVFDYLIGNADRHHYESFQDDEGASMLILLDNAKSFGNPSLDERSILAPLYQCCII
                     RVSTWNRLNYLKNGVLKSALKSAMAHDPIAPVLSDPHLDTVDQRLLNVLATIKQCTDQ
                     FGMDTVLVEDRMPLSHL"
ORIGIN      
        1 atgcggggct ccgggcgtcc ccgtgaggct gcgggcgatc gggagtcctt gcggtgaccg
       61 gtgctcgctg ctgagcacgg tccccagagg ctcttggccc tggcgtcgtc ctcctgtcaa
      121 gctaagctgg tgtcggcggc ccggggagcc agtgcgcttt tgctgggtcc ctatgcggcc
      181 ctcctggtgg ccgaggagag cgctttcgct gagtccctac cgggcccgca tggtggccga
      241 ggagagcgag tgacctgcag gccctgggcc ggagagggca gccgtgtact ggggtcgtgc
      301 gctcagagcg ccaaggggca caacttgaga tgagactgtc cagagtgggc tgcgctggcg
      361 gtttcatttc cgggtgtgat ggcccggcga ttaagagcga gcccagacgt cgccttgatg
      421 atgaatgtga acgttgtcag gctgtgtcct tgattgtgga gtctgataag acattctttt
      481 taatcaggag tcagtgatct gtcaggcttc tgataaaaag aagaaaagcg gggaacaaca
      541 gggcgtggat ggtccttata caattatttc gtttaaagac tgtgtctcca gtaggatggg
      601 acatgaatta gctccctttg actaccattt cagcctgaag ccagaaactt cagccttcag
      661 attgatttca cacctggaac cgtggaggtg ctgcagtgaa gaaatgtgta atcatggagt
      721 ctccttgcta atcgtcgcca cctgtccccc gtgataagcc ggcagggacc agcagggacg
      781 tgggtcgagg aggagaggcc accatgaagc tgaagcagcg ggttgtggtg ttagcaatcc
      841 tgctcgtcat ttttatcttc accaaagtgt tcctgataga caatttagac acatcagctg
      901 ccaaccgaga ggaccagagg gcgtttcacc gcatgatgac cggcttgcgg gtggagctgg
      961 tgcccaagct ggaccacacc ctgcagtctc cttgggagat tgcagcccag tgggtggtgc
     1021 cccgggaagt gtaccctgaa gagaccccag agctgggagc agtcatgcat gccatggcca
     1081 ctaagaaaat catcaaagct gacgtgggct acaaagggac acagctgaaa gctttactga
     1141 ctcttgaagg aggacagaaa gttgtcttca agcctaagcg gtacagcaga gactatgtgg
     1201 tagaagggga gccatacgct ggttacgaca gacacaacgc agaggtggcg gccttccatt
     1261 tggacaggat tctgggtttc cgccgagctc ccttggtcgt tggcagatat gttaacctgc
     1321 gaacagaagt taagcctgtg gccacggagc agctgctcag caccttcctc actgtaggaa
     1381 acaatacttg tttctatggg aagtgctact attgccgaga aacagagcca gcatgtgctg
     1441 atggagacat gatggagggc tccatcacac tttggcttcc agatgtgtgg cctctgcaga
     1501 agcatcggca tccctggggc aggacttacc gagagggcaa attggccagg tgggaatatg
     1561 acgagagtta ctgcgacgct gtgaagaaaa catcccccta tgactcaggc ccacgcctcc
     1621 tcgacatcat tgacacggct gtctttgatt acttgattgg caacgctgac cgccatcact
     1681 atgaaagctt tcaagatgac gaaggcgcta gcatgcttat tcttctggat aatgccaaaa
     1741 gctttgggaa cccctcgctg gatgagagaa gcatccttgc ccctctctat cagtgttgca
     1801 tcattcgggt ttcaacttgg aatagactga attatctaaa gaatggagta ctaaagtctg
     1861 ccttaaaatc tgccatggcc catgacccca tcgcccctgt gctctccgat ccacacttgg
     1921 acactgtgga ccagcggctt ctgaatgtcc tggccaccat caagcagtgt accgaccagt
     1981 ttgggatgga tactgtgctg gtggaagaca ggatgcctct ctcccacttg taactctcaa
     2041 acaagtggaa ctgattttta caaagataga gaaacagcac aatcaattcc aaatggcatg
     2101 tgatggcctg caagtggcca cagcaggtgc tggtgataga agacgtggcc ctgggagtgc
     2161 tcggtgtttt ctgcagtgca agctaaaggc cacagatcag cagggcgtct gtgcggggtc
     2221 agctctcaaa ctcagacagc cactctgccc agtcttcgtt accacccaca ccagaggact
     2281 ggcaggttga tatcggctaa ggaatgggtt ccagagtatg tgtctggggc tagccttgct
     2341 ctcctttctc acagccatgg attctctgaa aacactttgt agtccctgtg tctttaaaaa
     2401 acaaaaaacc agaactagtc agattgaaaa acagactgtt cctccagagt ggcatcagac
     2461 agaatagcag tctgctccgg gaaacccgtt tttagggtag attggaggat ggggaagggc
     2521 aggaagatct tggaactcta ggctattgag tagcatggat ttgacatctc agggaagaga
     2581 agagggaggg gctcactcta tagaaccagg aagataattg acttagtgaa aacagcttcc
     2641 tctagggctt aggttcttag atatgtccaa agcaaacagt cgtccccggc tatgttcaca
     2701 ctaaccacag tcatctctag aggaaatatt attacaaccc aagcatgatc ctccatggac
     2761 actaatttac cccatgccca ccttttgccc aaagttgcaa aacaaattga aactgtgctc
     2821 tctgccctcc ccccacacac acctttcccc ccctttcaat ggcattgttt attttgaggt
     2881 aggctatagc ctcttattgt agcctgtgct gatccggaac ttaactgtat aacccagctc
     2941 actttgaact ggcagcagtg ccgtggcctc agccttcccc atgctaggat gataggtgtg
     3001 aactacatgc ccagctctct catgtctgaa gtgcgctcac accctgtgag gtgaatggct
     3061 tgtaaggcat ttgatcaatg gtgctgttcc taggaggtta gtggccttgt ctgtgccttt
     3121 cttatgagaa agtgtcctgg tggctggact aagcttgtga tgtgtgccct gcaggtaaca
     3181 gagtgaaaga ttttaagcct ctgagccttg aaactgagga gatcacaaag agccttaata
     3241 ttttggttca taccaaatcc aaatttactt tcattcggag ttccgagccc atggtgtagt
     3301 agaattcttc atctctgagt cagggtcagc gttagttctg tgctctgtca tttgataggt
     3361 aagcagctgc cacatggcta gggaatgtgt ctgggacagt agctgcactc agactgtgtt
     3421 cccttgacat cttgtccagt tctgcactta tgtcacgaga agcctttcca cactggcttg
     3481 acatttaatg ccagccacag agcctggctt gaggcaactc ccttttgagt ttatccccct
     3541 accccttccc gtttctcaca ttaaaaccta gtggcaagta accacttttc tctttttttc
     3601 tttttttctt tttctctttt ttcttttttt ttctttttct cttttttttc ttttttttca
     3661 gagctgggga ccgaacccag ggccttgtgc ttgctaggca agcactctac cactgagcta
     3721 aatccccaag taaccacttt taaatggcat gaaattagga aaatttgtac atttaatgta
     3781 cactttgagg taggttaaga aatactgcat atttcttttt ctaaattgtg gatattgaac
     3841 ttaagaaaac aaacattagc acaaaacact aacatagtgt taacaaagga gatattgagc
     3901 cgggcagtgg tggcacaccc ctttagtcct agcattcagg aggcagagac aggcagatct
     3961 ctgagttcaa ggccagcctg gtctacagag ttctaggacc aaacccaaaa aacaaaagga
     4021 ggtattaagt ttccaggctg cttgctgtgt acatcaagaa aattcacagt tgaattttga
     4081 gattagctgg ttattagcaa tttctgcctg gagccagcag ggtgggtgga caacagtgcg
     4141 ccctcccccc attgctgatg aagctgcagc tcagcgttcc ctcgggcacc tcagtgaaga
     4201 ggtgcgccca gacaagcagc ctcactcact catgttcctt cagagcagtt agagaaaagt
     4261 cctctcacac ttcattttcc cactcatggc cctagaaggt gctcagctcc acagtggaca
     4321 gagttagtca gggcggctcg gcagttagag tataaagttg tgttctaact gggattggac
     4381 taagttagga aaggtacatt tgagtgaatt ttggcgtggc aggaggaggt cggctgtatg
     4441 cttccagccc caaatttata gacagaaaca aagttctgtc ggggaaaaag agatatatat
     4501 tttttaaagt attgtaactc cagcctcttt ttgggtcgtt tactggatta ggactgttac
     4561 aatcaaggcc ctgggggatt tcggtcagct ctaaattagt ttagccaact gaacctctgc
     4621 atagatggat gcactcaata caaagccaag aaatccgaat ccattgctat ttcctcccac
     4681 ttcttaaata tatatgtatt ctgaggtgga aatgggggag atttgaatat agaattttta
     4741 ttctcaaact ctacttaatc taaggctgca ttgtactttg ggagagctct aagcaccttt
     4801 aaaacagtcg tctctaattt gctgtagatg tttggtattt tttaaggttt gtctccctgt
     4861 ttgcactcag ggttaaagtg tcagactaaa cttttagaag aaaatagaga aattcaggac
     4921 ctcattacag attattcagc aaagtggacc ctgatgcttt ctcgatttcc ccagtgctgg
     4981 agacagcatc tccatccaaa gaaacacatt ttctttaaaa ctctcacact gtcttctccc
     5041 ccctgcttcc tgttccttca gcctccctcc ccttccctcc ctgatacctc tgattatctt
     5101 gtgatcacct gctgtcgtca cactctcctg agccctgaga gcagggtttt gggataggag
     5161 gtggaggttt gggttaatat ggccgtgtat gcattctacc aaggaaaatg ttcttacgtt
     5221 gacacaagga agtactgact cactggcact gagaaaggac tcggctactt agggttggca
     5281 tgcacaccca gcctttcctg ggcagcctgc taagccaggt gactgtgtgc tctgtggggg
     5341 gctggctctt ctccccttat ttctctagtc tgggtggtga gtgggggctg tcactctact
     5401 gtcacggttt ttaggaccta aggtgatcct cataaactct tgggggaagc tgggagtaac
     5461 ttactgggaa gctaatttat ttgtctgaag ggtggtggag ggatcactgc cctttgatct
     5521 gcctatggtt tcctcttgga gctgttgtgc agataggggt tgtacttggt aagacaccaa
     5581 acagatttct aatgtgttct atgggtttca gttctgaaaa aaaaataaaa gattttaata
     5641 ta
//
