LOCUS       NM_001170408            3018 bp    mRNA    linear   ROD 24-JUN-2024
DEFINITION  Rattus norvegicus family with sequence similarity 193, member B
            (Fam193b), mRNA.
ACCESSION   NM_001170408 XM_001069211 XM_573985
VERSION     NM_001170408.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3018)
  AUTHORS   Picchione,F., Pritchard,C., Lagutina,I., Janke,L. and Grosveld,G.C.
  TITLE     IRIZIO: a novel gene cooperating with PAX3-FOXO1 in alveolar
            rhabdomyosarcoma (ARMS)
  JOURNAL   Carcinogenesis 32 (4), 452-461 (2011)
   PUBMED   21177767
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            CB719022.1, DN936834.1, CB717749.1 and BC166819.1.
            
            On or before Dec 19, 2009 this sequence version replaced
            XM_573985.2, XM_001069211.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: single sample supports all introns SAMD00132261,
                              SAMD00132263 [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-524               CB719022.1         1-524
            525-1160            DN936834.1         96-731
            1161-1468           CB717749.1         230-537
            1469-3018           BC166819.1         262-1811
FEATURES             Location/Qualifiers
     source          1..3018
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..3018
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /note="family with sequence similarity 193, member B"
                     /db_xref="GeneID:498703"
                     /db_xref="RGD:1562335"
     exon            1..112
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            113..173
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            174..416
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     CDS             303..2636
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /codon_start=1
                     /product="protein FAM193B"
                     /protein_id="NP_001163879.1"
                     /db_xref="GeneID:498703"
                     /db_xref="RGD:1562335"
                     /translation="MPKLVKNLLGEMPLWVCQSCRKSMEEDERQTGGDHAVAISLSHT
                     SCKSQSCGGDSHSSSSSSSSSSSSSSSCHGNSGDWDPSSFLSAHKLSGLWNSPHSSGA
                     VPGSSLGSPPVIPGEAFPVSERHQHSDLTAPPNSPTGPAPHPASLIPSHPGSFSSASH
                     PHLLPTTPAAPFPAQASECPMAAATATHPPGPCQSPHLPSTSMPLLKMPPPLPGCSHP
                     CSGHCSGHCGGPLLPPPSSQPLPSTHSRDPGCKGHKFAHSGLACEADEGLGEEEDSSS
                     ERSSCTSSSTHPRDGKFCDCCYCEFFGHNAPLAAPTSRNYTEIREKLRSRLTRRKEEL
                     PVKGGTLGGIPGEPAVDHRDVDELLEFINSTEPKVPNSARAAKRARHKLKKKEKEKAR
                     LATEALKQVNRVSGSQEPRPARERLLEWPDQELDRVSSFLSSRLQEIKSTVKDSLCAS
                     LNMCELGMDSSGFKEGTMEAQTLTPSDLSGSSQKQPDINLDLSPLTLGSPQSHTLQAP
                     SEPVPPWAERRDPHPPWTEVRGPPPAIPENGLVRRLNTVPNLSRVIWVKTPKPGKPSS
                     EESPKEVPICKQERSEPVATGGKPRKSKRQGSQAKKTEASPAPWPPANQEAPSAKSQM
                     SSPKQPGKGPEPAKAGSAAEPGEGSRGSRPGPIQAASPKTDKKGSSWQNWPGGARART
                     LEQESEQIPGPAKPQSLSQGKGRSRRSRNKQEKSASSLDDVFLPKDLDGVEMDETDRE
                     VEYFKRFCLDSAKQTRQKVAVNWTNFSLKKTAPSTAQ"
     exon            417..648
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            649..1036
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            1037..1220
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            1221..1460
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            1461..2463
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            2464..2539
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            2540..2637
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
     exon            2638..3004
                     /gene="Fam193b"
                     /gene_synonym="RGD1562335"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 tgcgtttggc tctgcagaca ctgcatcggg cagcagggga ctctgggagg ctggtgcagc
       61 ctgaaggcat ggctcttgac agccttctag tagaatctct ggaattgtgc atggcagaag
      121 aggaaagaaa ctaacgggta ttgcgcacct actgtgtgcc agacccaggc caggttcccc
      181 ctgcctccag ccagtctgtg cagacttgtt gcctgctgtg tcaccgcgag cgcgaaggct
      241 gggaagaagg cccttcacag aatggactgg tgttgcaggg tgagaagctg ccccctgact
      301 tcatgccaaa gctcgtcaag aatctcctag gcgagatgcc tctgtgggtc tgccagagct
      361 gccgaaagag catggaggag gatgagaggc agacaggtgg agaccatgca gtggcgattt
      421 ccttgtcaca tacatcctgc aaatcacagt cttgtggggg tgactctcat tcatcctcgt
      481 cctcttcatc atcctcatct tcctcctcct cttcctgcca tgggaactca ggggactggg
      541 atcccagctc gttcctgtca gcacataagc tctcaggcct ctggaattcc ccacactcca
      601 gcggagctgt gccaggcagc tcgcttggga gtcctcctgt catccctggt gaggctttcc
      661 ctgtctcgga gcgccaccag cactcagacc tcactgctcc ccctaacagt cctactggcc
      721 ctgcccccca tccagcatct ctgatccctt ctcaccctgg ctccttcagc tcggcatccc
      781 acccacacct gctgcccacc accccagcag cacccttccc tgcccaggct tcagagtgcc
      841 ctatggctgc tgccactgcc acccaccccc cagggccatg tcagagccct catctgccct
      901 ccaccagcat gccacttctg aagatgcctc caccactccc ggggtgcagc cacccctgca
      961 gcgggcactg cagcgggcac tgtggtgggc ctctcctccc accaccgagc tctcagccac
     1021 tccctagcac tcacagcagg gaccctgggt gcaaggggca caaatttgca cacagtggcc
     1081 tggcctgtga ggccgatgag ggtctgggcg aggaagagga tagcagctct gagcgcagct
     1141 cctgcacctc gtcctccacc cacccccgcg atgggaagtt ctgtgactgc tgctactgtg
     1201 agttcttcgg ccacaatgcg ccactcgctg ccccgacgag ccggaattat actgagatcc
     1261 gggagaagct ccgctccagg ctgaccaggc ggaaagagga gctgcccgtg aaggggggca
     1321 ccctgggcgg gatccctggg gagcctgcgg tggatcaccg agatgtggat gagctgctgg
     1381 aattcatcaa cagcacggag cccaaagtcc ccaacagcgc cagggctgcc aagcgggccc
     1441 ggcacaagct gaaaaagaag gaaaaagaga aggcccggtt ggcaacagaa gctctgaagc
     1501 aggtgaatcg tgtttctgga agccaggagc caaggcctgc cagggagagg ctcctagagt
     1561 ggcctgacca ggagctggac cgagtcagta gcttcttgag cagccgcttg caggagatca
     1621 agagcaccgt caaagactcc ctctgtgcta gcttgaacat gtgtgagctc gggatggaca
     1681 gcagtggctt taaggagggg acaatggaag ctcagaccct aaccccttca gacctcagtg
     1741 gctcctctca gaaacagcct gacatcaacc ttgacctgtc ccctttgacc ttgggttctc
     1801 ctcaaagcca cacattacaa gctccaagtg agccggtccc accatgggca gaaaggagag
     1861 accctcaccc accatggaca gaggtgaggg gcccccctcc tgctatccct gagaatgggc
     1921 ttgtaagaag actcaacact gtgcccaacc tgtccagggt gatctgggtc aagacaccca
     1981 agccaggcaa gccaagctct gaggaaagtc caaaggaagt tcccatttgc aaacaggaac
     2041 ggtctgagcc tgtggccaca ggtgggaagc caaggaagag caagaggcag ggaagtcaag
     2101 caaagaagac tgaggcaagt ccagccccct ggcctccagc caaccaagag gcccccagtg
     2161 ccaagagcca gatgtctagc cccaagcagc caggcaaggg cccagagcct gccaaggcag
     2221 gcagtgctgc agaacctgga gaggggagcc gggggagccg gccaggaccc attcaggctg
     2281 ccagtcccaa aactgacaag aagggtagtt cctggcagaa ttggccaggc ggggccaggg
     2341 cacggactct ggagcaggaa tctgagcaga tccccggccc agcaaagcca cagagcttgt
     2401 cccagggcaa gggccgcagc cgccggagcc gaaacaagca ggagaagtca gcctcctcct
     2461 tggacgatgt gttcctgccc aaggacttgg atggggtgga gatggatgag accgaccgag
     2521 aggtggagta cttcaagagg ttctgtttgg attctgcaaa gcaaactcgt caaaaagttg
     2581 ctgtgaactg gaccaacttc agcctcaaga aaaccgctcc tagcacagct cagtgagccc
     2641 tacccaggtt gacttctgcc ggtcacctca agcctcagct caggctgcag atgtagttct
     2701 cacgtgccct gccacctgtc tcgacctccc tgctcctacc accctgacca accaaaagct
     2761 gaatggacgc catgctgtgc tggggccttt gaggatctca gcagagctgc ttcctggtgc
     2821 tatgcagcct ccactcaaga gcccagggaa tgggctggcc tgggagccaa gggctggtgg
     2881 cactgctggc ccaaaactgc tctctttgtg tttggtttct gttttgtttt gtttttttaa
     2941 ttctttactt ttgatactgt gaatatcttt catgcagaaa gataaagcaa catttggaca
     3001 cagaaaaaaa aaaaaaaa
//
