LOCUS       NM_001122653            2330 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 178, member B
            (Fam178b), transcript variant 1, mRNA.
ACCESSION   NM_001122653 XM_576542
VERSION     NM_001122653.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2330)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Nov 10, 2022 this sequence version replaced NM_001122653.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360181.3214725.1,
                                           SRR26643293.49778.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-249               JAXUCZ010000009.1  46409287-46409535   c
            250-564             JAXUCZ010000009.1  46388222-46388536   c
            565-626             JAXUCZ010000009.1  46386444-46386505   c
            627-740             JAXUCZ010000009.1  46383583-46383696   c
            741-893             JAXUCZ010000009.1  46373601-46373753   c
            894-999             JAXUCZ010000009.1  46365133-46365238   c
            1000-1084           JAXUCZ010000009.1  46362620-46362704   c
            1085-1199           JAXUCZ010000009.1  46346148-46346262   c
            1200-1293           JAXUCZ010000009.1  46339337-46339430   c
            1294-1470           JAXUCZ010000009.1  46338874-46339050   c
            1471-1568           JAXUCZ010000009.1  46338613-46338710   c
            1569-1656           JAXUCZ010000009.1  46324702-46324789   c
            1657-1782           JAXUCZ010000009.1  46317346-46317471   c
            1783-1860           JAXUCZ010000009.1  46303866-46303943   c
            1861-2013           JAXUCZ010000009.1  46303387-46303539   c
            2014-2330           JAXUCZ010000009.1  46301734-46302050   c
FEATURES             Location/Qualifiers
     source          1..2330
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q21"
     gene            1..2330
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /note="family with sequence similarity 178, member B"
                     /db_xref="GeneID:501125"
                     /db_xref="RGD:1564591"
     exon            1..249
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            250..564
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     CDS             349..2046
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="protein FAM178B isoform 1"
                     /protein_id="NP_001116125.1"
                     /db_xref="GeneID:501125"
                     /db_xref="RGD:1564591"
                     /translation="MQMPRDSFPTDWSPPPVEFLNKSKKVPPARRRPLEDLEMDLPDS
                     DQKVELASLEELFWNMSGPSQQQAGTPEVSSGGSECYVNNLDYLLQEKREQALEQEWE
                     QLLQQEHPRLESSTRDDDDREAVLTPEHRMLVEKFSVSLQVIPPVHPGETVFLPRRHP
                     LPCFLDSSSLRPHSQLEELFLRSSLPEQLSFLHNGFLSNLYLHAADCPRPLLRWLFQL
                     LTWPPETSSRAFGLLWDLSIDGLFRQPDEDMRLWYPSLQEVKEVFRCLGAYNPALYPH
                     GPFQHSSRALESEASLGCWEPQDPPQEVALDIKLSYIYRFLILCFLVQPTSYTDASIL
                     GLMELLCRAGLDVGLRLLPKTDLQQLLLLLLENIQEWPGKLQPLCCALSWVSDHHHNL
                     LTLVQFFLDATPRGRQLRSQLSLMVIARMLGQQESLPLWGEKTQLALLSQLLSLMRPS
                     SLRQCLGSETLPSSPGQQSKASAELDHKVCYLCHSLLTLAGVVVSSQDITPDQWGELQ
                     LLCMQLDRHISTHIRESPQAMHRTKLKDLATQTYIRWQDLLAHCQPQGQYFSPWKDI"
     exon            565..626
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            627..740
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            741..893
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            894..999
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1000..1084
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1085..1199
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1293
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1294..1470
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..1568
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1569..1656
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1657..1782
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1783..1860
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            1861..2013
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
     exon            2014..2330
                     /gene="Fam178b"
                     /gene_synonym="RGD1564591"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gtcgcaacgg tcggtcgtgg caggcacagt ggcctccaca gaaggtccct cctctccccc
       61 gcccctgctg acctggtgcc tccctccacc gtggtatcct gctccagttt cttgagcccc
      121 atcttctgag gctgccttgg ggcctctttc ctgctccaca gcttcctgtt cctgctcttc
      181 aggttcttaa atccgggcct cctggaagta ggcctccatc acagctcgag aggtagcttc
      241 attttactgc ctgaagtgca gcccctggac cacctccttc tccactcagt gtcacagctc
      301 tgcagcccca cagtggctct aactcccaaa tcactgaaga ggcccaagat gcagatgccg
      361 cgggactcat tccccactga ctggagccca ccacctgtag agttcctaaa caagagcaag
      421 aaggtacctc ctgctagaag gaggcccctg gaggacttgg agatggacct tccagattca
      481 gaccagaagg tggagctggc ctcactggag gagctcttct ggaacatgtc aggtccaagc
      541 caacaacagg ctgggacccc ggaggtttcg tctgggggct cggagtgcta tgtcaataat
      601 ttagattact tactgcaaga aaagagggag caggccctgg agcaggaatg ggagcagctg
      661 ctgcagcagg aacatcccag gctagagtcc tctactcgtg atgacgacga cagagaagca
      721 gtgctcacac ctgagcacag gatgctggtg gagaagttct ccgtgtccct gcaggtcatt
      781 ccaccagtgc acccaggtga aactgtattc ttgcctaggc gtcacccttt gccttgcttc
      841 ctggactcct ctagtctaag gccacacagc caattggaag agctcttcct caggtcctca
      901 ctgcccgagc agctctcctt tctgcacaat ggcttcctga gcaacctcta cctgcatgct
      961 gctgattgcc ctcggcctct gctgcggtgg ctgttccagt tgttaacatg gcctccagaa
     1021 acatcttcga gagcatttgg tctcctctgg gatctcagta tagacgggct gttccgtcag
     1081 cctgatgaag acatgcgttt gtggtatccc tcactgcaag aggtcaagga ggtgttccgc
     1141 tgcctgggag cctacaaccc tgccctgtac ccacatgggc ccttccagca cagctcaagg
     1201 gcgcttgaga gtgaggccag cctgggctgc tgggaaccac aggatcctcc ccaggaagtg
     1261 gctttggaca ttaagctgag ctacatctac aggttcctga tcctgtgttt cctagtccag
     1321 ccaacatcct acactgatgc cagcatctta ggcctgatgg agctgttgtg tcgcgcaggc
     1381 ctggatgtgg ggttgcgcct gctgcccaag accgacctcc agcaactcct gctcctgctg
     1441 ctggagaaca tccaagagtg gcctggaaag ctccagcccc tgtgctgcgc cctgagctgg
     1501 gtgtccgacc accaccacaa cctgctgacc cttgtacagt tcttcctgga cgcaacaccc
     1561 cggggcaggc agcttagaag tcagctgagt ctcatggtta ttgcccggat gctgggtcag
     1621 caggagtcac ttcctctctg gggagagaag acccagctag ccttgctcag ccagctcctc
     1681 agcctcatga ggccatcatc cctcaggcag tgtctgggct ctgaaacatt gccatccagt
     1741 ccagggcaac agtcaaaggc cagtgccgag ctagaccaca aggtctgcta tctgtgccac
     1801 agcctcctga cactggctgg ggtcgtggtc agtagccagg acattactcc cgatcagtgg
     1861 ggtgagctgc agctgttgtg catgcagttg gaccgccaca tcagcaccca tatccgggag
     1921 agcccccagg ccatgcaccg gaccaaactc aaggacctgg ctacccagac ttacatccgc
     1981 tggcaggact tgctggccca ctgtcagccc cagggccagt acttcagccc ttggaaagac
     2041 atttaaagag acaagagaca agtggcccaa ggctctggaa gagaactgta ggaggagaag
     2101 agtggagcca gagtcagcct ggcctgctgg gaagctagac tactgccact acccagcaca
     2161 gggtccttgt gtccctgacc atcctgccca tgagctccct cccttgaggg cccagttgtc
     2221 ttttctctcc cgagccctct ctgttggcta ctctctttcc cacaccctgc tctctctgcc
     2281 catcttgaat atgatgttca tttgtacaaa ttaaagtgtt gtttccagca
//
