LOCUS       XM_002727821            3125 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus family with sequence similarity 171,
            member A2 (Fam171a2), transcript variant X1, mRNA.
ACCESSION   XM_002727821
VERSION     XM_002727821.6
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_002727821.7.
            
            On Jan 21, 2021 this sequence version replaced XM_002727821.5.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3125
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3125
                     /gene="Fam171a2"
                     /note="family with sequence similarity 171, member A2;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 20 ESTs, 2 long SRA reads, 2 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 211 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:100361389"
                     /db_xref="RGD:1307966"
     CDS             162..2630
                     /gene="Fam171a2"
                     /codon_start=1
                     /product="protein FAM171A2 isoform X1"
                     /protein_id="XP_002727867.2"
                     /db_xref="GeneID:100361389"
                     /db_xref="RGD:1307966"
                     /translation="MPPPSGPGVLARLLPLLGLLLGGASRAPGKSPPEPPSPQEILIK
                     VQVYVSGELVPLARASVDVFGNRTLLAAGTTDSEGVATLPLSYRLGTWVLVTAARPGF
                     LTNSVPWRVDKLPLYASVSLYLLPERPATLILYEDLVHILLGSPGARSQPWVQFQRRA
                     ARLPVSSTYNQLWASLTPASTQQEMRAFPAFLGTEASSSGNGSWLELIPLTAVSVHLL
                     TGNGTEVPLSGPIHLSLPVPSEPRALAVGTSIPAWRFDPKSGLWVRNGTGVIRKEGRQ
                     LYWTFVSPQLGYWVAAMASPTSGLVTITSGIQDIGTYHTIFLLTILAALALLVLILLC
                     LLIYYCRRRCLKPRQQHRKLQLSGPSDNKRDQATSMSQLHLICGGPLEPTSSGDPEAP
                     PPGSLHSAFSSSRDLASSRDDFFRAKPRSASRPAAEPPGARSVEGAGLKGARSVEGPG
                     VLEPSLEEYRRGPAGAAAFLHEAPSPPPSFDHYLGHKGAAESKTPDFLLSQSVDQLAR
                     PPSLSQPGQLIFCGSIDHLKDNVYRNVMPTLVIPAHYVRLGGEAGAAGVGDEATPPEG
                     SAAGPARPFPQPDPQRPLIQGHAGAGGDGGGGEGWGGGRSAPVSGSVTIPVLFNESTM
                     AQLNGELQALTEKKLLELGVKPHPRAWFVSLDGRSNSQVRHSYIDLQAGGGGRSTDAS
                     LDSGVDVHEARPARRRPPREERERAQPPAPPPPAPPRLALSEDTEPSSSESRTGLCSP
                     EDNSLTPLLDEVVAPEGRAATVPRGRGRSRGDSSRSSASELRRDSLTSPEDELGAEVG
                     DEAGDKKSPWQRREERPLMVFNVK"
ORIGIN      
        1 ggccgctccg ggcggagaca atcgcgccga gcgggcgccg cagccggagc gggagcccaa
       61 cccggagctg cacagagcgg tgcagagctg gggctgagcg gggccggccg agcagggccg
      121 ggcggcagcg atggaccgct agggcccggc cgagccccgc gatgccgccg ccaagtggcc
      181 ccggagtcct cgcgcggctg ctgccgctgc tggggctgct gctcggcggc gcctcccggg
      241 ctcccggcaa gtctccgccg gagcccccca gccctcagga gatcctgatc aaagtacagg
      301 tatatgtgag cggggagctg gtgcccctgg cccgggcctc agtagacgtg tttgggaacc
      361 gcactctact ggctgctggt accacggact cagagggcgt ggccacacta cccctcagtt
      421 accgcctggg tacctgggtg ttggtcactg ctgcccgtcc gggtttcctc accaactcag
      481 tgccgtggcg tgttgacaag ctgccgttgt atgcatccgt cagcctctac ctgctcccag
      541 agcggccagc caccctcatc ctctatgagg accttgtgca catccttcta ggctctccag
      601 gtgcccgctc ccagccctgg gtgcagttcc agcgtagagc tgcccgcctg cccgtcagct
      661 ccacctacaa ccagctttgg gcttcgctca cccctgccag cacccagcag gaaatgcggg
      721 ctttccctgc cttcctgggg actgaggcct ctagctcagg caatggctcc tggctggagc
      781 tgatacccct gactgctgtg agcgtacacc tgctaacggg caatgggaca gaggtgcctc
      841 tctcaggccc cattcacctg tccctgccag taccctcaga gcctcgtgcc cttgctgtgg
      901 gcaccagcat tccagcctgg aggtttgacc ccaagagtgg gctgtgggtg cgaaatggca
      961 ctggtgtgat tcggaaggaa ggccgacagc tctactggac ttttgtctcc ccgcagctag
     1021 ggtactgggt agctgccatg gcctccccta catctgggct ggttaccatc acctcaggca
     1081 ttcaggacat cggcacgtac cacacaatct tcctgttgac catcctggca gccctagccc
     1141 tgctggttct cattctgctg tgtcttctga tctactactg ccgacgacgc tgcttgaaac
     1201 caagacaaca gcaccgcaag ctgcagctct ccggcccctc ggacaacaaa cgagatcagg
     1261 ctacgtcgat gtctcaactc catcttatct gcgggggacc cctggagcct acgtcgtcgg
     1321 gagaccccga ggcccctccc ccaggctccc tacactcggc cttctccagc tcccgagact
     1381 tagcatcctc ccgggatgac ttcttccgtg ccaaaccgcg atccgccagt cgaccagccg
     1441 ccgagcctcc tggtgcccgc agcgttgaag gtgccgggct taagggcgcc cgctccgtcg
     1501 agggtcccgg cgtgctggag cccagcctgg aagaataccg gcggggtcca gcgggagccg
     1561 ctgccttcct gcatgaggcc ccctcgccgc cgccgtcctt cgaccattat ctgggccaca
     1621 agggggcggc cgagagcaag acccccgact ttctgctgtc acagtcggtg gaccagttgg
     1681 cgcggccgcc gtccctcagc cagcccggcc agctcatttt ctgcggttcc atcgaccacc
     1741 tcaaggacaa cgtgtaccgc aatgtcatgc ccaccctggt catccccgca cactatgtgc
     1801 gcctgggcgg agaggcgggc gccgcgggag tgggcgacga ggccaccccg ccggagggct
     1861 cggccgccgg ccccgcgcgc cccttccctc aacctgatcc ccagcgcccg ctgatacagg
     1921 gccacgcagg tgcgggaggc gacggcggtg gcggcgaggg ctggggcggc gggcgctccg
     1981 caccggtcag cggttcggtc accattccgg tgctgttcaa cgagtccacc atggcgcagc
     2041 tcaacggcga gctgcaggct ctgaccgaga agaagctgct ggaactgggc gtgaagcctc
     2101 acccgcgcgc ctggttcgtg tccctggacg gacgttccaa ctcgcaagtg cgccactcct
     2161 acatcgacct gcaggcgggc ggcggcggtc gcagcacaga tgccagcctg gactcaggcg
     2221 tcgacgtgca cgaggctcga cctgcgcgcc gccggccccc gagggaggag cgggagcgcg
     2281 cgcagccacc cgcgccgccg ccgcccgcgc ccccgcgcct ggcgctcagc gaagacacag
     2341 agcccagcag cagtgagagc cgcacaggcc tctgctcgcc agaggacaac tcgctaacgc
     2401 ccctgctgga cgaggtggtg gcacccgaag gccgggcagc cacagtaccc aggggtcggg
     2461 gccgcagccg tggggacagt tcccgcagta gcgccagtga gctgcggcgc gactcgctca
     2521 ccagccccga ggacgagcta ggggcggagg tgggtgatga ggctggcgac aaaaagagcc
     2581 cgtggcagcg gcgggaggag cggccgctaa tggtgttcaa tgtcaagtag tgcggcccgg
     2641 gggtcgccca ccgcccctgc cgccagtgca gattcccagg gtgcgcgccc cgggatgctg
     2701 cagcagaggg gcatacgctc ttagcccgga gaagagctca tgggtcagct gagctcatct
     2761 gtggtttgtg ctgggggagt gtcttgggaa gggaccctgg attggcctct aagcagaggg
     2821 aggtgggagg gacccggtcc cctaagggag gggctgggga ggagggcagg ggtggggagc
     2881 agtgcctgta taaacgtggc tgtacataga aagatctatt gtgggagcag gaggggcaag
     2941 ccagcctcag ctgctagggt gagggctggg aagggaggga caatctctgt ggacccttgg
     3001 gaggggaggg gtgctgcttg gatgtcacag ggctggtggc tggggcggtc ctggggacta
     3061 taggataatg tgatgacact ctggacaaca acaacaaaaa aaaatacaaa actggtgagg
     3121 ttaaa
//
