LOCUS       XM_039096411            4182 bp    mRNA    linear   ROD 22-FEB-2024
DEFINITION  PREDICTED: Rattus norvegicus family with sequence similarity 171,
            member A1 (Fam171a1), transcript variant X2, mRNA.
ACCESSION   XM_039096411
VERSION     XM_039096411.1
DBLINK      BioProject: PRJNA1074393
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_086035) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Jul 30, 2024 this sequence was replaced by
            NM_001432313.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_036323735.1-RS_2024_02
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.2
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 02/09/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4182
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /bio_material="RGD 61498"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /sex="male"
                     /tissue_type="kidney, spleen, liver"
                     /geo_loc_name="USA: Wisconsin, Milwaukee"
                     /lat_lon="43.05 N 88.04 W"
                     /collected_by="Rebecca Schilling, Melinda Dwinell"
     gene            1..4182
                     /gene="Fam171a1"
                     /note="family with sequence similarity 171, member A1;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 34 ESTs, 141 long SRA reads, 6 Proteins"
                     /db_xref="GeneID:680259"
                     /db_xref="RGD:1594172"
     CDS             192..2873
                     /gene="Fam171a1"
                     /codon_start=1
                     /product="protein FAM171A1 isoform X2"
                     /protein_id="XP_038952339.1"
                     /db_xref="GeneID:680259"
                     /db_xref="RGD:1594172"
                     /translation="MSRSAALLLCLLGCHVWKAVTKTLREPGAGAQEVTLKVHVSDAS
                     THQPIADALIEVFASQVSVASGTSGTDGVAFIKFPYKLGNQLIVTATKHAYVPNSSPW
                     KPIRLPVFSSLSLGLLPERSATLMVYEDVVQIVSGFQGARPQPRVHFQRRALRLPENT
                     SYSALTAFLTAASSPSEVDSFPYLRGLDGNGTGNSTRYDLTPVTAVSVHLLSGNGTPV
                     LVDGPIYVTVPLATQSSLRHNAYVAAWRFDQKLGTWLKSGLGLVHQEGSQLTWTYIAP
                     QLGYWVAAMSPPIPGPVVTPDITTYHTVFLLAILGGMAFILLVLLCLLLYYCRRKCLK
                     PRQHHRKLHLPPVLESSKRDQSTSMSHINLLFSRRASDYPGPLSVSSHSRPEAPGTKE
                     LMGGVHLEMMSPNGEGDLHTPMLKLSYSTSQEFSSREELLSHKEEDKSQTSFDNLTPS
                     GTLGKEYHKSVEIFPLKARKSMEKEGYQAPSNDDYRGSYNTVLSQPSFEKQDQEGLTS
                     AGSKLTIQEHMYHVPLSPGKEQLLDRRPTECMMSRSVDHLERPTSFPRPGQLICCSSV
                     DQVNDSVYRKVLPALVIPAHYMKLPGDHSYVSQPLVVPADQQLEIGRLQAELSNPHAG
                     IFPHPSSQIQGQPLSSQAISQQHLQDAGAREWSSQNAPMSESLSIPASLNDAALAQMN
                     SEVQLLTEKALMELGGGKPLPHPRAWFVSLDGRSNAHVRHSYIDLQRAGRNGSNDASL
                     DSGVDMNEPKSARKGRGDPLSLQQSHPPLQEHQQKDPRAPDSAPYTQLVYLEDVDQSR
                     GECAATVCAPEDSALRCLLEGSGRRSGGQLPSLQEETTKRTSDVPLEPLASPNQRRSA
                     NDEEEDDDDDDDDDQGEDKKSPWQKREERPLMAFNIK"
     polyA_site      4182
                     /gene="Fam171a1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gagcggccgc ggcgctcggg ggaagcccgg cgcggggcgc ggaggaggga gcggccggtt
       61 gcggggcccc ggccaatcgg gcggctggcc gggcgcgcgg agccacagcg ccatggaggg
      121 aggcgcggcg cccggccgcc cgtgactgag cgtggcgagc ccgagcggcc cgcggcgccc
      181 gcggcgcgga gatgagcagg tccgctgcgc tgctgctctg cctgctcggc tgccacgttt
      241 ggaaggcggt caccaagacg ctgcgggagc ccggcgcggg agcccaagag gtgaccttga
      301 aagtgcacgt cagtgacgcc agcacccacc agcccatcgc agatgcgctc atcgaggtct
      361 tcgccagcca ggtgtctgtt gcctctggca catccggcac agatggggtc gccttcatca
      421 agttcccgta caaactggga aatcagctga ttgtcaccgc cacaaaacac gcctacgtgc
      481 caaactcctc gccgtggaaa cccatccgat taccggtatt ttcctcgctg agccttgggc
      541 tgcttcctga acgctctgct acgctaatgg tctatgaaga tgtcgtccaa atagtatcag
      601 gattccaagg tgcccggcca cagcctcgag ttcatttcca gagaagggcc ttgaggttgc
      661 cagagaacac cagctacagt gccctgacag ccttcctcac tgcggccagc tccccgtcag
      721 aagtagacag tttcccgtat ctgcgaggat tggatggaaa cgggacagga aacagcacca
      781 ggtatgactt gacccctgtc acagccgtca gcgtgcactt gctcagcggt aatgggacgc
      841 cggtgctggt ggatggaccc atctatgtca ctgtgccctt ggccactcag agcagtctga
      901 ggcacaacgc ctatgtggca gcatggcggt ttgaccagaa gctgggaacg tggctgaaga
      961 gtggtctggg cctggtgcac caggaaggca gccagctcac gtggacgtac attgctcccc
     1021 agctggggta ctgggtggca gctatgtctc cccccatccc aggtcctgtt gtgacaccgg
     1081 acatcaccac ctatcacacg gtgtttcttt tggccatttt aggagggatg gctttcattc
     1141 ttttggtttt gctgtgtctc cttttatatt attgcaggag gaaatgcttg aaaccccgtc
     1201 agcatcacag aaagctacat ctccccccag ttctggagag ctccaagagg gatcagtcaa
     1261 cgtccatgtc tcacatcaac ttgctgtttt cccgtcgagc gtcagattac cctggacctc
     1321 tgtctgtctc cagccatagc cgcccagagg ctccagggac aaaggaattg atgggcgggg
     1381 tgcatttaga aatgatgtcc cccaatgggg agggggacct gcacacaccc atgctaaagc
     1441 tctcctacag tacctcacaa gaatttagct cccgggagga gctgctgtcc cacaaagaag
     1501 aggataaaag ccaaacatct tttgataact taaccccgag tgggacgctg gggaaagagt
     1561 accataagtc tgtggagatt tttcccttga aagcaagaaa atctatggag aaggaaggct
     1621 accaggcccc cagcaacgat gactacagag gtagttacaa tactgtgctc tcccagcctt
     1681 catttgagaa gcaagatcaa gaaggcctga catcggcagg aagcaaactc accattcagg
     1741 aacacatgta ccatgtaccc ttatcccctg ggaaagagca actgctggac cgcagaccta
     1801 ctgaatgtat gatgtcacgg tctgtcgatc acctggagag acctacttcc ttcccgaggc
     1861 cgggccagtt gatctgctgt agttccgtgg accaagtcaa tgacagcgtt tacaggaaag
     1921 tgttgcctgc cttggtcatc ccggctcatt acatgaaact tccaggggac cactcgtatg
     1981 tgagccagcc tctggtggtc cccgctgacc agcagctgga aataggaagg ctccaagccg
     2041 agctgtccaa cccccacgcg gggatcttcc cacacccgtc ctctcagatc caaggccaac
     2101 ccttgtcttc ccaggcaatc tcccagcagc acctacagga tgcgggagcg cgggagtgga
     2161 gctctcagaa tgcacccatg tcagagtcac tttccatccc agcatccctg aatgatgcag
     2221 ccttggctca aatgaacagc gaggtgcagc tcctgactga aaaggcgctg atggaactgg
     2281 ggggtgggaa gccacttccg caccctcggg cgtggtttgt ctcgctggac ggaaggtcca
     2341 acgctcatgt tagacattcg tacattgatc tccaaagagc tggaagaaat ggaagtaatg
     2401 atgccagttt ggactctggc gtggatatga atgaaccaaa atctgcccgg aagggaaggg
     2461 gagacccttt gtctctccag cagagccacc cgcctctcca ggagcaccag caaaaagacc
     2521 ccagagctcc cgacagcgcc ccctacacgc agctcgtgta cctcgaggac gtggaccaga
     2581 gccgtggcga gtgtgcggcc acggtctgcg cccccgagga cagcgcactg cgatgcttgt
     2641 tggaagggtc aggtcggagg agtggggggc agctgcccag cctgcaggag gagacaacca
     2701 aacgaacttc agatgttccc ctggagccat tagccagtcc caaccagaga agatccgcca
     2761 acgatgaaga ggaagacgac gacgacgacg atgacgatga ccaaggagaa gataagaaaa
     2821 gcccctggca aaagcgagag gaaagaccct tgatggcctt caatatcaaa tgagccgtcg
     2881 ataagcccct aaatgcggat tataaaattg ccaaatatcc tttctcatga aagcgcgtac
     2941 ctgcgtgtgg agaagctgag gagcggaaac catgcaagta aatgcttact gcattgacat
     3001 ggcggcggaa ttacggttag gacgcagagg gaagggtgac tgacagatgc tgcccctcca
     3061 ggaaggtggc tgggagacgt cagtcattct atggacctgg cttgtcgcag tagggatgct
     3121 gacaaaccac gtgtgggatt gctatgctcc aaggatcacc tcagttctcc ctcagattct
     3181 ggaaacagat gaaacaaact ctctttgcat tgtttgaacc ctccatcctg tcatgataac
     3241 actactgtga agctctcact gggaaagttg ggtggcgagt acttcccgga agtcggtgtt
     3301 acccggaagt cggtgttatc tcaaaagaaa gctatgcatt gctgctgctt ttttactttg
     3361 cttcagttag gtctctctct ctctctctct ctctctctct ctctctctct ctctctctct
     3421 ctctctcctc tctctggtgg gaggggttgt tttttctgtc tctgaagtac aactcagttt
     3481 cagctgtaaa atttcagttt ccttgtctca gtctattcta cttctccgtg gtcggtttca
     3541 gtgtctccct tcaggagctc agaacccggg tgtcggctct taacatctct aagcccttta
     3601 atgaattgta ctaaaggttt tgtttttttt taatcagctg agagtccctc aattctggtc
     3661 ccattaactc caagtgcctt ttttacagtg acaacagaca gtccctcggt ttcatgtttt
     3721 ttcgtaaccc tttcgattga actgcctgga ttttatataa agttactaag cgataccttg
     3781 ttctttgaac tgcatgctgc caagtgccgt tcgtacccag catcctcatt tcaacacagt
     3841 atacgctcta gttatcctgt gtaacgtggg tctgtttagc taagatagac tagaggacac
     3901 tgtagagatg cccttcctac tccatccctt ggccactgtg gtggttccac tggctgtttg
     3961 tatatagggt tacgcattaa ctctggactc ctgtgggccc ttcctgctca cagaacacga
     4021 gagtgcgggc tgagcacggg gatcgagcct tttaaagaac actcgtgtat tgtccaaaag
     4081 tgccagagtg actgactctt ctgcgcattc tcctttaaga gctgcttggt tgtccaaaaa
     4141 aatgaaaact caaaataaac ttgaaagaag gaaaaaaaaa aa
//
