LOCUS       NM_001401019            2386 bp    mRNA    linear   ROD 31-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 149, member B1
            (Fam149b1), transcript variant 2, mRNA.
ACCESSION   NM_001401019 XM_006251632
VERSION     NM_001401019.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2386)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
REFERENCE   2  (bases 1 to 2386)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000015.1.
            
            On Feb 1, 2022 this sequence version replaced XM_006251632.4.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643290.45594.1,
                                           SRR26643293.58785.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760393 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-213               JAXUCZ010000015.1  4016105-4016317     c
            214-318             JAXUCZ010000015.1  4013230-4013334     c
            319-448             JAXUCZ010000015.1  4011754-4011883     c
            449-591             JAXUCZ010000015.1  4008717-4008859     c
            592-708             JAXUCZ010000015.1  4006694-4006810     c
            709-867             JAXUCZ010000015.1  4004885-4005043     c
            868-1055            JAXUCZ010000015.1  3999308-3999495     c
            1056-1180           JAXUCZ010000015.1  3987551-3987675     c
            1181-1284           JAXUCZ010000015.1  3986402-3986505     c
            1285-1509           JAXUCZ010000015.1  3983807-3984031     c
            1510-1633           JAXUCZ010000015.1  3983297-3983420     c
            1634-1753           JAXUCZ010000015.1  3982968-3983087     c
            1754-1826           JAXUCZ010000015.1  3980032-3980104     c
            1827-2386           JAXUCZ010000015.1  3978377-3978936     c
FEATURES             Location/Qualifiers
     source          1..2386
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /map="15p16"
     gene            1..2386
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /note="family with sequence similarity 149, member B1"
                     /db_xref="GeneID:289900"
                     /db_xref="RGD:1359592"
     exon            1..213
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     CDS             167..1894
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /note="isoform 2 is encoded by transcript variant 2;
                     protein FAM149B1; primary cilium assembly protein
                     FAM149B1"
                     /codon_start=1
                     /product="primary cilium assembly protein FAM149B1 isoform
                     2"
                     /protein_id="NP_001387948.1"
                     /db_xref="GeneID:289900"
                     /db_xref="RGD:1359592"
                     /translation="MISRYTRKAVPQSVELKGLTKHALTHHPLPEQLGDVPSTNDSHE
                     KDTSSQSESDITQESPITSTDTGNSHSAFPSYAGTGVSTEGSSDFSWGYGELDQNATE
                     KVKAMFTAIDELLYEQKPSVHTQSLQKECQQWASSFPHLRILGRQIITSSEGYGLYPR
                     SPSAVSASHEAILPQERESTIFGIRGKKLHFSSSYKASPSTKASGSSADGEEADCIIF
                     SEGIIEEYLAFDHTDMEEGFHGNKSEAATEKQKLGYPPIAPFYCMKEDVLAYVFDNVW
                     SKAVGCMEQLTRSHWEGFASDDESNVEITRLDSGSPYMLNEQQPLVLPRVPQSKVMSV
                     TSNPMNFCQASGHQPNVNGLLIHGMPLQPRNLSLMDKLLDLDDKLLMRPGSSSVLSNR
                     NWPNRAMELSTSSLSYTTQSARRRNPPPRTLHPISTSHSRTGTPWPAEEILRGPRLPM
                     TADSLSSPSPMTMGRNNLLPPIGTADVEHLSILGSQRPTKPHGDSSRARSAAVDEPNQ
                     QPQERLLLPVFSRPNTTQSFLPETQYRSSCASECPHHARPGRGSAGPQSHGSTKPQSR
                     GGPISRTRQ"
     exon            214..318
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            319..448
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            449..591
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            592..708
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            709..867
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            868..1055
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1056..1180
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1181..1284
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1285..1509
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1510..1633
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1634..1753
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1754..1826
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
     exon            1827..2386
                     /gene="Fam149b1"
                     /gene_synonym="RGD1359592"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gggaactctg ggaggtggcg gtccggaatc taagcgacgg ggcgagacgg ggcgagacgg
       61 ggccggtagg tggcaggagg gggccgggcc ggagccggcg ggagggccag gccccgaggc
      121 ccccgccctg gcttgcccgc cccggccgca gaggagaaaa acgagaatga tctccagata
      181 cactcggaag gccgtgccac agagcgtgga gctgaaagga ctgacaaagc acgctctgac
      241 ccaccatccc cttccagagc agctgggtga cgttccctct accaacgaca gccacgagaa
      301 ggacacaagt tctcagagtg aatctgacat cacccaagaa tcaccgatta catcaactga
      361 cactgggaat tcgcactctg cttttccaag ctacgcaggc acaggggtct cgacagaagg
      421 cagctccgac ttctcttggg gatatggtga acttgaccag aatgccactg agaaagtgaa
      481 ggccatgttc acggccattg atgagctcct gtatgaacag aagccgagcg tgcacacaca
      541 gagcctgcag aaagagtgcc agcagtgggc gtccagcttc cctcacctca ggattctggg
      601 taggcagata atcacttcga gtgaaggcta tggattgtac cctagatccc cttctgctgt
      661 gtcagcttca catgaagcaa tcttgcctca agaaagagag tctaccatat ttggtataag
      721 gggaaagaag ttacactttt catcgtctta caaagcatct cccagcacca aagcctctgg
      781 ctcgtctgct gatggagagg aggcggactg tataatcttc tctgaaggaa taatcgagga
      841 gtacctagct tttgaccaca cagatatgga agagggattt catggaaaca aatcagaagc
      901 agctacagag aaacagaagt tagggtaccc tcccattgca ccattttact gcatgaaaga
      961 ggatgttctt gcttatgtgt ttgacaacgt gtggagcaag gctgtgggct gtatggagca
     1021 gttgacacgt agtcactggg agggatttgc ttctgatgat gagagtaacg ttgaaattac
     1081 cagactggat tcgggaagtc cctatatgct gaacgaacag cagcctttgg tcttacctcg
     1141 agtgccgcag tctaaggtga tgtcagtcac ctcaaatccg atgaatttct gtcaagcaag
     1201 tggtcatcag ccaaacgtga atggcctctt gattcatggg atgcctctac agccaaggaa
     1261 tctctccctg atggataagc tcctagatct tgatgacaag ctcctcatga ggcctgggtc
     1321 cagttccgtc ctttcaaacc gaaattggcc aaaccgagcc atggagctca gtacatcatc
     1381 cttgtcatat acaacgcagt ctgccaggag gcgcaacccc ccaccacgca cccttcatcc
     1441 gatcagcacg agccactcac gcactggaac accgtggcct gcagaagaaa tcctcagagg
     1501 accccggctt ccgatgacag cagactcact ctcttctccc tcaccaatga ccatgggtcg
     1561 gaacaacctg ctgccaccta ttggaacagc tgatgtagag cacctgagca tcctggggtc
     1621 ccaacggcca acaaaacccc acggtgattc cagccgagcc cgaagtgcgg cggtggacga
     1681 gcctaaccag cagccccagg agaggctcct tctgcctgtc ttctctagac ccaacacaac
     1741 tcagtcgttt ctgccagaaa cacagtaccg aagctcatgt gcgtctgagt gccctcatca
     1801 cgcccggcct ggcagggggt ctgcaggccc tcagtcacat gggtctacaa aacctcaaag
     1861 cagaggtgga cccatctcta gaaccaggca gtgaccacag agcaagtgag aacttgcaag
     1921 gttgcagcag acttgggaac acatggaggc tttcatgcac cagcctgagc accagatgac
     1981 ccagagctcc tacaaacagc agcgtggtcc atcgagagcc atcttggagc acatgtctga
     2041 gaaccaccac agtatctgcc aaagactgca cgggaagctg ttctgtgtcc agttcctgcc
     2101 ttcttttagc tctcattcca tggggcagta aagattgtac ccaaagactt gacaatgaaa
     2161 aaccacccca aatcactgct catgttgtct gtaaccaatc acctgttcaa ttctagtacg
     2221 attcagtgag attgcataca cacaaatgat tcagatcact gagttcagaa tatttctgct
     2281 tatattaatt tctggaggct tgtactcagt tttaacatat ttttaggaga aagtgctgcc
     2341 aacaatctga gatattcatc aaataaatgt cattcctaaa ctttaa
//
