LOCUS       XM_039107805            4090 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus family with sequence similarity 13,
            member A (Fam13a), transcript variant X5, mRNA.
ACCESSION   XM_039107805
VERSION     XM_039107805.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051339.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4090
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="4"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..4090
                     /gene="Fam13a"
                     /gene_synonym="Fam13a1; RGD1309807"
                     /note="family with sequence similarity 13, member A;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 8 ESTs, 7 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 21 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:362378"
                     /db_xref="RGD:1309807"
     CDS             193..2052
                     /gene="Fam13a"
                     /gene_synonym="Fam13a1; RGD1309807"
                     /codon_start=1
                     /product="protein FAM13A isoform X5"
                     /protein_id="XP_038963733.1"
                     /db_xref="GeneID:362378"
                     /db_xref="RGD:1309807"
                     /translation="MACEIMPLRSAHVSQVSSVSTTGEELINKENIPCGLSSCDECIL
                     NSQEAERFQDDICEYVGERSKAKRQKSSSRLAELCENHDGHLSTESLSSMQTQETAEP
                     EAVELRSSESKEAERSWRDTQHCESPAMKIQEHPSISDTKQQRNQDDDDQQESFVPDL
                     PQLDLTALCDKTWEEPIPSWQQENVESDEARLSPQAGRLIHQLLDEDSDPMLSPRFYA
                     YGQSRQYLDDTEVPPSPPNSHSFMRRRSSSLGSYDDEQEDLTPVQLTRRIQTLKKKIR
                     KFEDRFEEERKYRPSHSDKAANPEVLKWTNDLAKFRKQLKETKLKISEEDLTPRTRQR
                     SNTLPKSFGSQLEKEDEKKQELVDKAIRPSVEATLEGILRKLQEKRMESSRPEDIKDM
                     TKDQIANEKVALQKALLYYESIHGRPVTKTERQIMKPLYDRYRLVKQILSRASTVPII
                     GSPSSKRRSPSLQPIIEGETASFFKEIKEQEEGSEDDSSTKPDFTVTLKTDSSAHCFL
                     DQLEDDADGFISPMDDKMPSKCSQDSGLSNLHSASIPELLEYLQEIREEKKMIRKKLH
                     DFEDNFFRQNGRNVQKEDRTPMAEEYNEYKHIKAKLRLLEVLISKRDADSKSM"
ORIGIN      
        1 tcagctgctt cgctggaaca aaaggtcaaa gtggactgca gtgtaaatgt ggaggcagcc
       61 gataaatatc cttgcctgca gctggaggtg gagaggcagt gtcagcttca tcaggttgtg
      121 tgttccgcgg gccctgcaca cagggcttgc ctggaagaca ctcgaggatc ccgtgcagat
      181 tcacacacga ggatggcttg tgaaatcatg ccgctgcgaa gcgctcatgt atcccaagtc
      241 agcagtgttt caacaactgg agaggagctc atcaataagg agaatattcc ctgtggcctc
      301 agcagctgtg atgagtgtat tttgaacagc caggaagcag aaagattcca ggatgatatt
      361 tgtgagtacg ttggggaaag aagcaaagcc aagcgtcaga aatccagctc caggcttgca
      421 gagctttgtg agaaccatga tggacacctg agcacagaaa gcctcagttc catgcagact
      481 caagaaacag ctgaacccga agctgttgag ctgagatctt ctgagagcaa agaagcagaa
      541 agaagctgga gagacactca gcactgtgag agccccgcga tgaagattca ggagcatccc
      601 agtatatctg acaccaaaca acagaggaat caggatgatg acgatcagca ggagagcttt
      661 gtcccagatc tgccccagtt ggacctgaca gcattgtgcg ataagacctg ggaagaaccc
      721 atcccttcct ggcagcaaga gaatgtagaa tctgatgaag ctcgcctctc cccacaggct
      781 gggcgcctga ttcaccagct tctggatgag gacagtgacc ccatgctgtc ccccaggttc
      841 tatgcctatg ggcagagcag gcagtacctg gatgacacag aagtacctcc ttctcccccc
      901 aattcccatt ctttcatgag gcggcgaagc tcctcgcttg gatcctacga tgatgagcaa
      961 gaggacctga cgcccgtgca gctcaccaga aggatccaga cccttaaaaa gaagattcgg
     1021 aagtttgagg ataggtttga agaagagagg aaatacagac cctcccacag tgacaaggca
     1081 gccaaccctg aggttctgaa gtggacaaat gacttggcca aattccggaa acagcttaaa
     1141 gaaacaaaat taaagatctc tgaagaggac ctcaccccca ggacacggca acgaagcaat
     1201 acactcccca agagtttcgg ttcccagcta gaaaaagaag atgagaagaa gcaagaactg
     1261 gtggacaaag ccatcaggcc cagcgttgaa gctacactgg aagggatact aaggaagctc
     1321 caagagaagc gaatggaatc cagccgtcct gaggacatta aggatatgac caaggaccag
     1381 attgctaatg agaaagtggc tctgcaaaaa gccctgctct actacgaaag tatccacggg
     1441 cggccggtga caaagactga gcgtcagatt atgaagccac tatatgatcg gtaccgactg
     1501 gtcaaacaga tactgtcccg ggccagcact gtccccatca ttggttcccc ttccagcaaa
     1561 cggagaagcc cttcgctgca gccaattatt gagggtgaaa ctgcttcctt cttcaaggag
     1621 ataaaggaac aagaggaggg atcagaagat gacagctcca caaagcccga cttcactgtc
     1681 actctgaaaa cagacagcag tgcacattgc tttctggacc aacttgaaga tgacgccgat
     1741 ggatttattt caccaatgga tgacaaaatg ccatcgaaat gcagccagga ctcaggcctt
     1801 tcaaacctcc actctgcttc aatacctgaa ctcttggaat accttcagga aataagagaa
     1861 gaaaagaaaa tgattcgaaa gaaacttcat gattttgaag acaatttttt cagacaaaat
     1921 gggagaaatg tccagaagga agaccgtact ccaatggctg aagaatacaa tgaatataag
     1981 cacataaagg cgaagctacg tttgctggag gtgctcatca gcaaaagaga cgctgattcc
     2041 aaatccatgt gaaaggctgg tggtgtggat gacagttctc ccagaaaaga acagctctgg
     2101 aaggcagcag ccttggagct gtacttacaa agaaggcaat cccctgcctc tgacctatca
     2161 gattgtctcc ggcttccatt gcctgcctta gaaactgcct gcatggaaga tgccagtgtg
     2221 tcctgactac aggattttat atgtcaacac acactgcagt aggaacttcc ctgacatgag
     2281 cagcgattag acaccatcag actcagcaga taacctgctc ttcttccctg acaactgaga
     2341 aacatgaggc cattctaaaa ctgtgacaga cacaagctca ggacttccct tgcagaacct
     2401 gcttgttgta gaggtctgtg ttggccctgg accccaccac atggttgacc atgcatcggc
     2461 acactatttg ctgccttggc catttcccaa gctgtactta ctcccgcaaa tccatttctc
     2521 gttagctctc aggtagatgg aagctgcatg cacccagtgg cagggcagtt atttcattga
     2581 ttcgatctgt cagctgacag actttaagtc cctgcctcat acctgtgtat gctgaggaca
     2641 gagtgacaac acaaatagct atgcagatgg tattttaaaa tcaggtgaca gcagaagagc
     2701 ctgaaaactc ttcaagacac tgactgcact ttccagtctc agacatggat gtcggatcca
     2761 aaatgaggct ggtgttccta tgataacctg tttggggctc aattttgttg ttgcactagc
     2821 caaacaaagg agtcttgctt cattactaga ctaggtatag agtatcaggg gagagaggga
     2881 ctctgtatcc gtctcttaaa cttaccagag cataattttt ctacgaaagt aaatctgcac
     2941 taaaattcct aaatggatgg gtaagatgta gccctaagag ctcaactcac tctcaaggca
     3001 gaatctagat cacactgttt tcaagatgat acataaacaa aatggtgtgt ggccaatttt
     3061 gatgctgtgg attttttttc caaagactat gtcacaaagc tgtctatatt agacattttg
     3121 gagggaccag ggaacttaag accacacaca cacacacaca cacacacaca cacccattca
     3181 tctcttctgt ggtcctgctg tcactcttgt gatgtgttct ttcttttcat ctaccatgtc
     3241 cgcctgaaga gcgcagcctt gcttttgcag gcgtgtgaca gccttgcctt tggaaggctg
     3301 cactgtaggt tgggcaggca gcagggagac cctgttctgt ttagagagtc accgtcaaca
     3361 gggtacagtg ttaatgagga gaatggaaaa ctatcaccag ttgcaatgat aacacatgtt
     3421 tgaggggtct cagtcaggtg attttcagca ctgctcccca ctgtggctct gtcaccagga
     3481 cctctttcat taacaggggt ggggtggggt gggtggagga ttccttcagt tctgctttta
     3541 caagtaatcc caatagcagc atgagctatg tgttggcaat actctgtttt tatccacaca
     3601 cttaaaagac gatacatgat cctacaaatt tcaatgtaca tgaagatgta gtttgatatt
     3661 cttagctctg ctgtttacat ttgctatgat ttcaaggagt tatactatga ataaaattat
     3721 gtaatgtagg atgttttcta tttttgaggc ctgaacatga atcattcaca tgaccaaaaa
     3781 aatgtatttt taaaaagaaa tccatgtcta gtctgtaatt tttaagtact taatctccta
     3841 aggaaactgg aacaacacaa atcaacacca gttaactttt aaagcacatc tgcttaagag
     3901 tattgttttg aaaagaatgc gctagagatt tcttttttaa agctgcatac aaatgagaag
     3961 ctattagatg ttctgaaatt tatcgtttgc accaaaggta aatgaactaa gatttatttg
     4021 ggacttccca ttcagtttta tgtgatcaat aaaataccaa gttattggaa aataaatcat
     4081 gtatgaaata
//
