LOCUS       NM_001134597            6532 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 135, member A
            (Fam135a), transcript variant 2, mRNA.
ACCESSION   NM_001134597 XM_001068890 XM_017596559 XM_346029
VERSION     NM_001134597.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 6532)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On or before Mar 18, 2021 this sequence version replaced
            XM_017596559.2, NM_001134597.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760383, SAMEA5760386
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            inferred exon combination :: based on alignments, homology
            RefSeq Select criteria    :: based on conservation
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-156               JAXUCZ010000009.1  33996896-33997051   c
            157-245             JAXUCZ010000009.1  33995321-33995409   c
            246-337             JAXUCZ010000009.1  33983674-33983765   c
            338-453             JAXUCZ010000009.1  33982445-33982560   c
            454-533             JAXUCZ010000009.1  33975394-33975473   c
            534-673             JAXUCZ010000009.1  33965890-33966029   c
            674-744             JAXUCZ010000009.1  33965728-33965798   c
            745-918             JAXUCZ010000009.1  33964061-33964234   c
            919-1045            JAXUCZ010000009.1  33962586-33962712   c
            1046-1199           JAXUCZ010000009.1  33961776-33961929   c
            1200-1249           JAXUCZ010000009.1  33954732-33954781   c
            1250-1405           JAXUCZ010000009.1  33952571-33952726   c
            1406-1479           JAXUCZ010000009.1  33941318-33941391   c
            1480-1634           JAXUCZ010000009.1  33939305-33939459   c
            1635-3987           JAXUCZ010000009.1  33936739-33939091   c
            3988-4148           JAXUCZ010000009.1  33935162-33935322   c
            4149-4240           JAXUCZ010000009.1  33933317-33933408   c
            4241-4338           JAXUCZ010000009.1  33932764-33932861   c
            4339-4490           JAXUCZ010000009.1  33930408-33930559   c
            4491-4601           JAXUCZ010000009.1  33929233-33929343   c
            4602-4715           JAXUCZ010000009.1  33920406-33920519   c
            4716-6532           JAXUCZ010000009.1  33916449-33918265   c
FEATURES             Location/Qualifiers
     source          1..6532
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q13"
     gene            1..6532
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /note="family with sequence similarity 135, member A"
                     /db_xref="GeneID:367235"
                     /db_xref="RGD:1304927"
     exon            1..156
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            157..245
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            246..337
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            338..453
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     CDS             377..4921
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /note="isoform 2 is encoded by transcript variant 2"
                     /codon_start=1
                     /product="protein FAM135A isoform 2"
                     /protein_id="NP_001128069.2"
                     /db_xref="GeneID:367235"
                     /db_xref="RGD:1304927"
                     /translation="MTEVQAMVEFSVELNKFYNVDLFQRGFYQIRASMKIPPRIPHRV
                     EASLLHATGMTLAFPASVHDALVCSKTFQILYKNEEVVLNDVMIFKVKMLLDERKIEE
                     TLEEISFLLSLDLHFTDGDYSADDLNALQLISSRTLKLHYSIYRGLHHHANIMFDYFH
                     LSVVSVTVHASLVALHQPLISFPRPVKTTWLNRSAPAQSKDSAIPTLESVVFGVNYTK
                     QLSPDGCTFLIAEPFLQHAYHFHYTLCATLLLAFKGLHSYFITVTEEIPSCQKLDLEA
                     MDTEARLTELCEEVKKVENPDELAELINMNLAQLCSLLMALWGQFLEAITLHEELRVL
                     LAQEHHTLRVRRFSEAFFCFEHPREAAIAYQELHAQSHLQMCTAIKNTSFCSSLPPLP
                     IECSELDGDLNSLPIIFEDRYLDSVIEDLDAPWMGIQSLQISEASKVDKHETEESSVA
                     GLSSPELKVRPAVASSNCYTEGEKQLTKSLKGKNEESNKSKVKVTKLMKTMKPETTKK
                     LIKQNSKDSVVLVSYKCLKNTASSDLTKCFEGNPSYSQKEGLDPTMCRDNFDPKTYIR
                     QPSQKEASSLSADTDRAEHKSPDTETMHPDQSALLNSGSLNLCANLSISGKLGISQDD
                     SDIPDTEHKLASRSPSNDCLDCQTAPSSGVRTLEVKPSSEESFSEEKVTVKIGPWTEL
                     QEDELFVNNLLPDFEALDSNDKSKSIDLPLEKDALQEAKCRCTEESLTKFRSNLPAPS
                     TKEYHVVVSGDTIKLPDSNAAYASSRFSDSGVESEPSSFATHPNPEIAFETLQGPGPC
                     NNERLLPQLLMKPDHNVKLSLGSHCTESTSALSEIQQSSLTSINSLPSDDELSPDDDC
                     KRCAVADCQLSDSKTVLHPGTTSLPKWDDTKKSSVILQQQCVVFSGHLDNDTLAMHSL
                     DLSSEDPLQLILSGEDASSGVRSHWGSKPHLDTVFTGSQSHSTSSINSVETVPTLNSK
                     LICLGSPCVVSGSVCTDAELSEDRTVEGKSSEPLNHKQICSEGPVVESHPLSTGDDSL
                     SSSTDVVKQGLVEDYFGSQSNTDVSDACAVTYHSLVSSQETCDKGIGDLQQEQGKEGM
                     QDDQEMVQNGYHEETDFPATGGAVSVHCVRADELGGQRHELSENLSSDYLRAAVTVPA
                     VCTSACLSFPSAPRESPCVKYSSRSKVDAITKQPSSISYNFTSSTSWYENSPKPQIHA
                     FLQAKEELKQLKLPGFMYSDVPLLASSAPYFSMEEEEGSEDGVHLIVCVHGLDGNSAD
                     LRLVKTYIELGLPGGRVDFLMSERNQNDTFADFDCMTDRLLDEIIQYIQIYSLTVSKI
                     SFIGHSLGNLIIRSVLTRPRFKYYLSKLHTFLSLSGPHLGTLYNSSALVNTGLWFMQK
                     WKKSGSLLQLTCRDHSDPRQTFLYKLSNKAGLHYFKNVVLVGSLQDRYVPYHSARIEM
                     CKTALKDKQSGQIYSEMIHNLLRPVLQSKGCNLVRYNVINALPNTADSLIGRAAHIAV
                     LDSEIFLEKFFLVAALKYFQ"
     exon            454..533
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            534..673
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            674..744
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            745..918
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            919..1045
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            1046..1199
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            1200..1249
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            1250..1405
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            1406..1479
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            1480..1634
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            1635..3987
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            3988..4148
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            4149..4240
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            4241..4338
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            4339..4490
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            4491..4601
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            4602..4715
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
     exon            4716..6532
                     /gene="Fam135a"
                     /gene_synonym="RGD1304927"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gaaccggctc ctggctttgc ggtggttgcg ggtgcagcga tggcgatgtg agtgggcccg
       61 gggcgggatg gtgcggacct gggtaaggac gccttccagc cggacgcaca gctcctccgt
      121 cgcacaggcg ccaaccgagg ccgcgcgggt tgagagggtt gaagaacaac tggattatgt
      181 atttcattct ggaatctcaa agcagcctac aaacaataag ttcttcctta tgttatctat
      241 gccaggggac acagtatatt tttaacaaca agaatcagta actggaaata aaaggttcat
      301 catttaataa tgtaaaatga agatttgatc agcagaggtg ctgttaccag atttgtcctc
      361 tgggtataaa ttaaaaatga ctgaagttca agcaatggta gaattctccg tggagctaaa
      421 caagttctac aatgtggatt tattccaaag aggtttttac caaatacgtg catcgatgaa
      481 aataccacct agaattcccc acagagtaga agccagtttg ttacacgcaa caggcatgac
      541 attagccttc ccagcttcag ttcatgatgc tctggtttgt agtaaaacat ttcagatcct
      601 atataaaaat gaagaagttg ttttaaatga tgtcatgatc ttcaaagtta aaatgttgtt
      661 ggatgaacga aagattgaag aaacactcga agaaataagt tttttgttat ctttggatct
      721 acatttcaca gacggagact attcggcaga tgatctgaat gccttacaac taataagcag
      781 tcggacattg aaactgcact acagtatcta cagaggactt catcaccatg ccaacatcat
      841 gtttgattac ttccaccttt ctgtggtgtc agttacagtc cacgcatcat tggttgcact
      901 acaccaacca ctaataagct tccctcgccc tgtgaagact acgtggttaa acagaagtgc
      961 accagcacag agcaaagact cagcgatccc tactctggaa agtgtagtct ttggtgttaa
     1021 ctacacaaaa cagttgtcac cagatggctg taccttcctc attgcagagc ccttcctaca
     1081 gcacgcctat cattttcatt atacactttg tgctactttg ctgctagcct tcaagggatt
     1141 gcacagctac ttcattacgg taacagaaga gattccctct tgtcagaaac tagacctgga
     1201 ggcaatggat acggaggctc gtcttacgga actgtgtgaa gaagttaaga aagtagaaaa
     1261 ccccgatgaa ctggcagaac tgatcaacat gaacctggca cagctttgct cccttctcat
     1321 ggctttatgg ggacagtttc tggaagctat aacactgcat gaagaattaa gagtgctgtt
     1381 agcacaggag caccatacgt tgagggttcg cagattttcg gaggcattct tttgttttga
     1441 acatccaaga gaagctgcta ttgcatacca agaactccat gctcagagtc atctacagat
     1501 gtgcaccgct atcaaaaata cttccttctg cagttctctt ccacccctac ctattgaatg
     1561 tagtgaatta gatggagatc tcaattcatt acctataatc tttgaagata ggtatttaga
     1621 ttcagttatt gaagacttag atgcgccctg gatgggaatt cagagtcttc agatatcaga
     1681 ggccagtaaa gtggataaac atgagacgga agaaagctct gtagcaggac tttctagccc
     1741 agagttgaag gtcagacctg ctgttgcctc cagtaattgc tatacagaag gtgaaaagca
     1801 gctaacaaaa tctctaaaag gaaagaatga agaatcaaat aaatccaagg ttaaggtcac
     1861 taagctcatg aaaacaatga aaccagaaac cacaaaaaag ttaataaaac agaactctaa
     1921 agattctgtg gttttagtaa gctacaaatg tttgaaaaat acagcatcaa gtgatctcac
     1981 taaatgcttt gaaggcaatc cttcatatag tcagaaggaa ggtctggatc ccacaatgtg
     2041 tagagataat tttgacccaa agacctacat cagacagcca agtcaaaagg aagctagctc
     2101 tttgtcagct gatacagaca gagctgaaca caagtctcca gatactgaaa ctatgcaccc
     2161 agaccagtcc gctctcttga actctggcag cctaaatctt tgtgcaaatt tgtccatttc
     2221 aggtaaactt ggtatttccc aagacgatag tgatatccca gatacggagc acaagctggc
     2281 atctagaagt ccatcaaatg attgccttga ctgccagaca gccccatctt cgggagttag
     2341 aacacttgaa gtcaagccca gtagtgaaga gtctttcagt gaagaaaaag taactgttaa
     2401 gataggacct tggacagagc ttcaagaaga tgaactattt gtcaataatt tactgcctga
     2461 ttttgaggcc ttagactcta atgataaatc taagtctata gatctaccac ttgaaaagga
     2521 tgctttacag gaagcaaaat gtcgttgtac tgaagaatca ttaactaaat tcagaagtaa
     2581 tctacctgct ccttctacaa aagaatatca tgttgtagta agtggtgaca caattaaatt
     2641 accagatagt aatgccgcgt atgcctcctc tagattttca gattcaggtg ttgaaagtga
     2701 accaagttct tttgcaacac atcccaatcc ggaaatagcc tttgaaactc tccaaggacc
     2761 aggtccttgc aataatgaaa gattacttcc tcagcttttg atgaagcctg atcacaatgt
     2821 aaaactttcg ttaggaagtc attgcaccga gagcacaagt gctctaagtg aaatacagca
     2881 gtcgtctttg acgtcaataa actccctgcc ttctgatgat gagctgtcac ctgatgacga
     2941 ctgtaagaga tgtgctgtag ctgactgcca gctaagtgac agtaaaactg tactccatcc
     3001 aggaacaacc agtctgccaa agtgggatga taccaaaaag tcaagtgtta ttttgcaaca
     3061 acaatgtgtt gtcttttcag ggcatttgga caatgatacg ttagcaatgc attccttaga
     3121 tttaagcagt gaggacccat tacagctcat tctctccggg gaagatgctt ccagtggtgt
     3181 aagaagtcac tggggctcca aacctcactt ggacaccgtc tttacaggct cccagagcca
     3241 tagtacatct agtatcaact ccgtggaaac agtgccaaca ctaaattcaa aactgatttg
     3301 cttaggttct ccttgtgtgg tttcaggttc tgtttgcacc gatgcagagc tcagtgaaga
     3361 tagaactgtg gaaggaaaaa gcagtgagcc attaaatcac aaacaaatat gttcagaagg
     3421 ccctgttgtg gaaagtcacc ctctgagtac aggtgacgac tctctttcca gtagtaccga
     3481 tgtggtaaaa caagggcttg tggaagatta ttttggatct cagagcaata cagatgtttc
     3541 tgatgcatgt gctgttacct accacagcct agttagctct caggaaacct gtgacaaagg
     3601 gattggtgat cttcagcagg aacagggcaa agaggggatg caggacgatc aagaaatggt
     3661 tcaaaacggg tatcatgagg aaacggactt tccagctaca ggtggagcag taagtgttca
     3721 ctgtgtaagg gcggatgagc taggaggaca aagacatgaa ctgtctgaaa acctaagcag
     3781 cgactatctg agggccgctg taactgttcc tgctgtttgt acgtctgcct gtttgtcctt
     3841 cccatctgct ccacgagagt ctccttgtgt taaatattct tctcgaagta aagttgatgc
     3901 cattacaaag cagccaagca gcatttctta caacttcact tcttcaacct cctggtatga
     3961 aaattcacca aaacctcaaa tacacgcctt ccttcaggca aaagaagaat tgaagcaact
     4021 taaacttcct ggtttcatgt acagtgacgt tcctctgctg gcgtcctcag caccgtactt
     4081 cagcatggaa gaggaggagg gttctgagga cggcgtgcac ctcattgtct gtgtccatgg
     4141 tctggacggg aacagtgcag atctccgact agtgaaaaca tacattgaat tgggactgcc
     4201 tgggggaaga gttgatttcc taatgtctga gagaaaccag aatgatactt ttgctgattt
     4261 tgactgcatg actgatcgcc ttttggatga gatcatacag tatattcaga tatatagttt
     4321 aacagtctca aaaataagct ttatcggaca ttcattaggc aatttaataa tccgttcagt
     4381 gcttacaagg ccaaggttta aatattacct cagcaaactt catacctttc tctctctttc
     4441 tggacctcac cttggtacac tctacaacag cagtgctctt gtcaatacag gtctctggtt
     4501 tatgcagaaa tggaaaaaat caggctctct tttacagctg acatgtcgag atcattcaga
     4561 ccctcgccaa acatttttat ataaacttag taataaagcg gggctccatt atttcaagaa
     4621 tgttgtgctg gtaggatctc tgcaggaccg ctatgttcct taccattctg ctcgcatcga
     4681 aatgtgtaaa acagctttaa aggacaagca gtcaggacaa atctattccg aaatgatcca
     4741 caacttgctt cgcccagttc tacagagcaa aggctgtaat ttggttcgct acaatgtcat
     4801 taatgcgttg cccaacacag ctgattcact catcgggaga gctgcacata tagctgttct
     4861 tgattccgag atatttttag agaagttttt cctggttgct gccctcaaat atttccagta
     4921 gaaccgaagc atcattagag acttaccaat tacctcactc agcgatgatt taaataatgt
     4981 attatagttg tgtagatgct aagtttatga catatttata cctttttata tggaagataa
     5041 tttatatcat ccatgtgtag agccttttaa acatcaactt tactttctag gtaatgtggc
     5101 tgtgcaatat ttttttaatt ttatcttttt acttttctat ttttcatata ttttgctacc
     5161 taagtatttc agtgaacctt gtgcccatgt gtgtgtctga tcatttagta gtggcttcca
     5221 cagtcttatt cagactatat cacatcaaag gttgttattg ctagaatagt atagtatctt
     5281 aaattctcta atttggggct tttagtggac attttacttt taacacttta ttctgtttta
     5341 actggaagga aaataatggc tgctaaaaag tatttttgaa atcaacttct ttaatcctaa
     5401 aatattaaat ttacatttga tcaaaccaag tggttcatac atgccaatgt tttaaaggtt
     5461 ttctataaaa tcatattgtt gctattaaac atgtgtcatg cttattaaaa tatattttta
     5521 ctggtaattt caacattatt tctcatattg acttttatta ctgggactct tcttgttcat
     5581 taggagctta taaagatttt tgaatgccct ctgccttgat ttggttggaa ttttgttaaa
     5641 tttagtaatg ttgcttgaac tttctcacag cagctctgta acccttttca tagagttcct
     5701 tgtatataat aattaaatgt tgaagtttat gaaatacttt tatgaattta gataattttt
     5761 agatactatt aaaatttatc aggcaaaaaa tcatgtaaat tgaatattga gtttaaaatt
     5821 gagagaggat tcactttact tgtttggtgg tacagatgca ggtgtttttg atacacagag
     5881 atggtgagtc tttacaaaaa ggtgctgatt agcattaaat tcactatttt ttcctcctgt
     5941 tttacttgtg aaaacagtaa tgcactgagg gtgggtgcta agtctgtttc cgttcaccag
     6001 ttgctgtgga caaagggttg tagagtctat gttgtgtata attggtgcat gtttattttt
     6061 cgtatcatgt taattcctct gatgttaata aatgagcaaa tgcctttctg gagggatagc
     6121 aataatattt gtaatgcttg cttactccta gaatgcatag agatgcagca gtggcctgaa
     6181 taacatctgc caatgatggg ccggttccac actggcatag ccctctagcc tcagggtgtc
     6241 ttgggctagt gtattctaag tttatattag cacatcctga tgctgcacag cacccagctc
     6301 tcttctaaga atatgttccc atcattaagt gattaatggc tgcctgtgat tttatccata
     6361 actagatatt gtaatctttc atttatacca agttcttaaa gaatttcatt gattttttga
     6421 taattattta tttttcaaaa attattcaag atttttatga actgaactaa gcaataaatt
     6481 tcccaaaggt attgtagcta gaaaacatta aatgcattca ttgtcaacca ta
//
