LOCUS       NM_001191816            4963 bp    mRNA    linear   ROD 09-APR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 120 member A
            (Fam120a), mRNA.
ACCESSION   NM_001191816 XM_237998
VERSION     NM_001191816.3
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 4963)
  AUTHORS   Baltz,A.G., Munschauer,M., Schwanhausser,B., Vasile,A.,
            Murakawa,Y., Schueler,M., Youngs,N., Penfold-Brown,D., Drew,K.,
            Milek,M., Wyler,E., Bonneau,R., Selbach,M., Dieterich,C. and
            Landthaler,M.
  TITLE     The mRNA-bound proteome and its global occupancy profile on
            protein-coding transcripts
  JOURNAL   Mol Cell 46 (5), 674-690 (2012)
   PUBMED   22681889
REFERENCE   2  (bases 1 to 4963)
  AUTHORS   Castello,A., Fischer,B., Eichelbaum,K., Horos,R., Beckmann,B.M.,
            Strein,C., Davey,N.E., Humphreys,D.T., Preiss,T., Steinmetz,L.M.,
            Krijgsveld,J. and Hentze,M.W.
  TITLE     Insights into RNA biology from an atlas of mammalian mRNA-binding
            proteins
  JOURNAL   Cell 149 (6), 1393-1406 (2012)
   PUBMED   22658674
REFERENCE   3  (bases 1 to 4963)
  AUTHORS   Ghosh,D., Lippert,D., Krokhin,O., Cortens,J.P. and Wilkins,J.A.
  TITLE     Defining the membrane proteome of NK cells
  JOURNAL   J Mass Spectrom 45 (1), 1-25 (2010)
   PUBMED   19946888
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Feb 11, 2021 this sequence version replaced NM_001191816.2.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643298.68743.1,
                                           SRR26643429.51937.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-510               JAXUCZ010000017.1  15890611-15891120
            511-757             JAXUCZ010000017.1  15909126-15909372
            758-840             JAXUCZ010000017.1  15913209-15913291
            841-969             JAXUCZ010000017.1  15925933-15926061
            970-1066            JAXUCZ010000017.1  15927503-15927599
            1067-1164           JAXUCZ010000017.1  15937898-15937995
            1165-1448           JAXUCZ010000017.1  15938184-15938467
            1449-1536           JAXUCZ010000017.1  15945442-15945529
            1537-1764           JAXUCZ010000017.1  15947367-15947594
            1765-1939           JAXUCZ010000017.1  15950141-15950315
            1940-2189           JAXUCZ010000017.1  15959360-15959609
            2190-2304           JAXUCZ010000017.1  15963061-15963175
            2305-2514           JAXUCZ010000017.1  15968461-15968670
            2515-2698           JAXUCZ010000017.1  15970570-15970753
            2699-2836           JAXUCZ010000017.1  15971238-15971375
            2837-2978           JAXUCZ010000017.1  15974600-15974741
            2979-3075           JAXUCZ010000017.1  15975112-15975208
            3076-4963           JAXUCZ010000017.1  15979450-15981337
FEATURES             Location/Qualifiers
     source          1..4963
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17p14"
     gene            1..4963
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /note="family with sequence similarity 120 member A"
                     /db_xref="GeneID:291019"
                     /db_xref="RGD:1306643"
     exon            1..510
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     CDS             37..3387
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /note="family with sequence similarity 120A"
                     /codon_start=1
                     /product="constitutive coactivator of PPAR-gamma-like
                     protein 1"
                     /protein_id="NP_001178745.3"
                     /db_xref="GeneID:291019"
                     /db_xref="RGD:1306643"
                     /translation="MGVQGFQDYIEKHCPSAVVPVELQKLARGSLVGGGRQRPPQTPL
                     RLLVDADNCLHRLYGGFYTDWVSGGQWNHMLGYLAALAKACFGGNIELFVFFNGALEK
                     ARLHEWVKRQGNERQTAQQIVSHVQNKGTPPPKVWFLPPVCMAHCIRLALIRFHVKVA
                     QSIEDHHQEVIGFCRENGFHGLVAYDSDYALCNIPYYFSAHALKLSRNGKSLTTSQYL
                     MHEVAKQLDLNPNRFPIFAALLGNHILPDEDLASFHWSLLGPEHPLASLKVRAHQLVL
                     PPCDVVIKAVADYVRNIHDTSDLDAIAKDVFQHSQSRTDDKVIRFKRAVGYYSATSKP
                     MPFHPPHYLPRPNPFGMPGMVPPYVPPQMLNIPQTSLQAKPAVPQVPSPGGTPGQAPY
                     PYSLPEPALALDSSGKNLTEQNSYSNIPHEGKHTPLYERSSPINLAQSGSPNHVDSAY
                     FPGSSTSSSSDNDEGSGGATNHISGNKIGWEKTGSHAEPLARGDPGDQVKVEGSSTAS
                     SGSQLAEGKGSHMGTVQPIPCLLSMPTRNHMDITTPPLPPVAPEVLRVAEHRHKKGLM
                     YPYIFHVLTKGEIKIAVSIEDEANKDLPPAALLYRPVRQYVYGVLFSLAESRKKTERL
                     AFRKNRLPPEFSPLIIKEWAAYKGKSPQTPELVEALAFREWTCPNLKRLWLGKAVEDK
                     NRRMRAFLACMRSDTPAMLNPANVPTHLMVLCCVLRYMVQWPGARILRRQELDAFLAQ
                     ALSPKLYEPDQLQELKIENLDPRGIQLSALFMSGVDMALFANDACGQPIPWEHCCPWM
                     YFDGKLFQSKLLKASREKTPLIDLCDGQAEQAAKVEKMRQSILEGLNFSRQNHPLPFP
                     PPPALPFYPASVYPRHFGPVPPSQGRGRGFAGVCGFGGHYGETVATGPYRAFRVTAAS
                     GHCGAFSGSDSNRTSKSQGGVQPIPSQGGKLEIAGTVVGHWAGSRRGRGGRGPFPLQV
                     VSVGGPARGRPRGVISTPVIRTFGRGGRYYGRGYKSQGAIQGRPPYAASAEEVAKELK
                     SKSGESKSSAVSSEGSLAENGVMAEEKPVPQLNGSTADTRAPSHSESALNNDSKTCNT
                     NPHLNALSTDSACRREAALEAAVLNKEE"
     exon            511..757
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            758..840
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            841..969
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            970..1066
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            1067..1164
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            1165..1448
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            1449..1536
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            1537..1764
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            1765..1939
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            1940..2189
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            2190..2304
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            2305..2514
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            2515..2698
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            2699..2836
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            2837..2978
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            2979..3075
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
     exon            3076..4963
                     /gene="Fam120a"
                     /gene_synonym="RGD1306643"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccccgccgc ccgcgcgcgc ccgcctcgcc gccgccatgg gcgtgcaggg cttccaggac
       61 tacatcgaga agcactgtcc gagcgccgtg gtgccggtgg agctgcagaa gctggcccgg
      121 ggcagcctgg tgggcggcgg gcggcagcgg cccccgcaga ccccgcttcg cctgctggtg
      181 gatgccgaca actgcctgca tcgcctgtac ggtggcttct acaccgactg ggtgagcggc
      241 ggccagtgga accacatgct cggctacctg gcggctctgg ccaaggcctg cttcggaggc
      301 aacatcgagc tcttcgtctt cttcaacggc gcgctcgaga aggcccggct gcacgagtgg
      361 gtcaagcggc agggtaacga gcgccagaca gcgcagcaga tcgtcagcca tgtccagaac
      421 aagggcacgc caccgcccaa ggtctggttc ctgcctccgg tctgcatggc ccactgcatc
      481 cgcctggcgc tcatccgctt ccacgtcaag gttgcacaga gcattgagga tcatcatcaa
      541 gaagtgattg gcttctgcag agagaatggt ttccatggct tggtggcgta tgactctgat
      601 tatgcactgt gcaacatccc ctactacttc agtgcccatg ccctgaaact gagccgcaat
      661 gggaagagtc tcaccacaag ccaatatctg atgcacgagg ttgccaagca actggacctg
      721 aacccaaacc gttttcctat ttttgctgct ctgttaggaa atcacatact acctgacgag
      781 gatctggctt cctttcattg gagtttactt ggtccagagc atccgctcgc ctcactgaag
      841 gtccgagctc accagctggt cttgccacca tgtgatgtag tgatcaaagc tgtagctgat
      901 tatgtccgca acatccatga cacgtctgac ctggatgcca tagctaaaga tgttttccag
      961 cattcacagt ctagaacaga tgacaaagtc attcgattta agagagcagt tggatattac
     1021 tcagcaacta gcaagcctat gccatttcac ccaccacatt acttaccccg accaaatcca
     1081 tttggaatgc ctgggatggt gccaccatat gttccccctc agatgctcaa cattccacag
     1141 acttctctgc aagcaaagcc cgcggtccca caggtgccca gcccaggggg caccccaggc
     1201 caggctccat acccatacag cctccctgag cctgccctcg ccctggactc tagcgggaag
     1261 aacctgacag agcagaacag ctacagcaac attcctcacg aggggaagca cacaccgctg
     1321 tatgagcgct cctcgcccat caacctggcc cagagcggca gccccaatca cgtggattcc
     1381 gcctacttcc ctggctcgtc tacctcgtcc tcatcagaca acgatgaggg cagtggaggg
     1441 gcaaccaacc acatcagcgg gaacaagatt ggctgggaga agacaggaag ccatgcagag
     1501 ccactggcac ggggagaccc aggagaccaa gtaaaggtag aaggttcatc cactgcctct
     1561 tcgggaagcc agctagctga aggcaaaggg agccacatgg gcactgttca gccaatcccg
     1621 tgcctcctgt caatgcccac caggaaccac atggatatca ccacacctcc cttgcccccc
     1681 gttgcacctg aggtgctgag agtggctgag cacagacaca agaagggact gatgtacccc
     1741 tacatcttcc acgtcctgac aaagggtgaa atcaaaattg ctgtttctat tgaagatgaa
     1801 gccaacaaag acctgcctcc ggccgccctg ctctataggc cagttcgtca gtatgtttac
     1861 ggagtcctgt ttagtttggc agaaagcaga aagaaaactg agagacttgc ttttagaaag
     1921 aacagacttc caccagaatt ctcgccactg atcattaagg aatgggcagc ttacaagggg
     1981 aagtctcctc agaccccgga actagtggaa gcactggcct tccgggagtg gacctgcccc
     2041 aacctgaaga ggctttggct gggcaaggcg gtggaggaca agaaccgccg gatgagggcc
     2101 ttcctggcct gcatgaggtc tgatacccca gccatgctca accctgccaa tgtgcccact
     2161 cacctcatgg tgctctgctg tgtcttacgg tatatggtgc agtggcccgg agctcgcatt
     2221 ctgcggcgtc aggagctgga tgccttcctg gctcaggcat tgtctcccaa actctatgag
     2281 ccggaccagc tgcaggaact caagattgag aacttagacc cccgaggaat tcagctgtca
     2341 gctctcttca tgagcggagt agacatggca ctgtttgcca atgacgcgtg tgggcagccc
     2401 ataccctggg aacactgttg tccttggatg tatttcgatg ggaagctctt ccagtccaaa
     2461 cttcttaaag ccagccggga aaagacccca ctcatcgacc tctgtgatgg tcaggctgag
     2521 caggctgcca aggttgaaaa gatgcgccag agtatcctgg aggggctcaa cttctcccgg
     2581 caaaaccacc cactcccctt cccaccgcct cctgctctgc ccttctaccc agcttctgta
     2641 tatcctcggc actttgggcc ggtcccaccc tcacagggca ggggcagggg ctttgcagga
     2701 gtctgtggct ttggaggcca ttatggggaa actgtagcaa caggccctta ccgtgccttc
     2761 cgggtgacag cagcatcggg acactgtgga gccttctcag gcagtgacag caacaggact
     2821 agcaagtccc agggcggagt ccagcctatt ccttctcagg gagggaagct agaaatagct
     2881 ggcacggtgg tcggccactg ggctgggagc aggcggggcc gtgggggccg agggcccttc
     2941 cctctgcagg tggtgtctgt gggaggacca gcaagagggc gtccaagggg tgttatttcc
     3001 actcctgtga ttagaacgtt tggaagaggt ggaaggtact acggcagagg ctataaaagc
     3061 cagggagcaa ttcagggcag acctccttat gctgcttcag cagaagaagt ggccaaagaa
     3121 ctgaaatcga aatctgggga atccaagtcc tctgctgtgt cctcagaagg gtccctggct
     3181 gaaaacggag tgatggccga ggagaagcca gtgccccaac ttaatgggag cacggctgac
     3241 accagggccc ccagccactc tgaaagtgcc ttgaacaatg actctaaaac gtgcaataca
     3301 aatcctcact taaatgcact aagtacagac agcgcctgcc gcagggaggc tgctctggag
     3361 gcagctgtct taaataaaga agagtgaact tatttttata gagggtgaag gatgctggaa
     3421 gggtaaggat tcaggaatat ctggagagaa agagagcctg cagttatgta cattttgtcc
     3481 tttccgtaag agaaaatgag gactgtggaa attcagatcc ctctttgata tcagagattt
     3541 aaacaacaca ttcttttttt agttttaacc agttgtagtc aaaatgctac aataaaacaa
     3601 aacgagagag agaaaatgaa gagcatttga ctcccgcact taaaaatgaa gcacacaaag
     3661 tttaaactgg ttacgacgac aaaagcctac agttgtgttt cttgaactat aaagaaaaca
     3721 aattttggca gtgtttaagt atatatagct taaaatataa tttttagcat ttggcaccat
     3781 atgtatgcca ttatatttga ttttgcatta ctgtttcaca atgaagcttt gttttaaggc
     3841 tttgatttat gattatgaaa gaaataaggc acaaccacag tttttctttc ttacttaaat
     3901 ttcatcactg ttgatgtggt tcttttgtgt taaaaaagtg caactatcga aactaaaaaa
     3961 aattatagag taaactgctg ttgtgctgat tttgaataca cagtacatca tacatacttt
     4021 acaagcaagt tcaatggaga taaagttgaa atcatagaag atgcaaatga cctttcaaag
     4081 tcaacacaat gtgttctgaa acctcgtgac taataccatg cacctgtgat cagtgagcta
     4141 cgtggttttg aatcggacgt agaccattag tgctactact tgagctaaac ttctgcatgg
     4201 ttcataattt ttaaagtgtg tagttaatat tatgcatgtt attgtctttt cttccattct
     4261 taccagtacg tgcccatttg caaaacgaaa tgctaataat cagtaatagt cctatgagga
     4321 tgttaactct gtttagtcat tgactgatct tgctctaacc ccaaaacttt gtgattattg
     4381 acctctgttg catttattct aaacccccca aaatgaccta gccgtttgga gtatcaacat
     4441 taccctggtg tactcactgc tgttgcagga ttgttctctg ttgctgttta tgccttcata
     4501 ttcatattag ccaaatatga aattctgtaa agaagaaccc cctatgatct taaaaaacaa
     4561 acacccctcc ccttctgtag caggaaacaa attgcttgtt cttgagaagt tcccatcagg
     4621 aatttagtag aagcaggtat acttctatca ttttgatgtt ttgttactgt ttccaaacaa
     4681 tgtactttga atcagaatca cttcttacgt ttcatatact tccgatgctc ttcatcacat
     4741 tagtgatcag aaatgaggtg taactcccca acccctgccc gcgagagcta agtaggatct
     4801 tactgtaagt tgaagggact tccgccctaa ctcatggatt gtgaagaatg aactgctgtt
     4861 gggtctgatt gactgttgat ggattgtggt gtggcgtatc cagaggctat tgaatgcaac
     4921 ttacaatgct taataaaaat ctttattctt ttagtataaa gta
//
