LOCUS       NM_001025283            1547 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 118, member B
            (Fam118b), mRNA.
ACCESSION   NM_001025283 XM_235990
VERSION     NM_001025283.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from
            JAXUCZ010000008.1.
            
            On Nov 27, 2020 this sequence version replaced NM_001025283.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC098017.1, SRR26360194.1467256.1
                                           [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760383,
                                           SAMEA5760386 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-93                JAXUCZ010000008.1  41846163-41846255   c
            94-346              JAXUCZ010000008.1  41841082-41841334   c
            347-574             JAXUCZ010000008.1  41833330-41833557   c
            575-703             JAXUCZ010000008.1  41829425-41829553   c
            704-989             JAXUCZ010000008.1  41827374-41827659   c
            990-1046            JAXUCZ010000008.1  41825215-41825271   c
            1047-1547           JAXUCZ010000008.1  41824522-41825022   c
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="8"
                     /map="8q21"
     gene            1..1547
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /note="family with sequence similarity 118, member B"
                     /db_xref="GeneID:315549"
                     /db_xref="RGD:1307173"
     exon            1..93
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
     CDS             8..1060
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /codon_start=1
                     /product="protein FAM118B"
                     /protein_id="NP_001020454.1"
                     /db_xref="GeneID:315549"
                     /db_xref="RGD:1307173"
                     /translation="MASTGSQASDIDKIFGFFNDGEPPTKKPRKLLPSLKTKKPRELV
                     LVIGTGISAAVAPQVPALKSWKGLIQALLDAAIDFDLLEDEESKKFQKCLHEDKNLVH
                     VAHDLIQKLSPRTSNVRSTFFKDCLYEVFDDLESKMEDSGKQLLQSVLHLMENGALVL
                     TTNFDNLLELYAADQGKQLESLDLTDEKKVLEWAQEKRKLSVLHIHGVYTNPSGIVLH
                     PAGYQNVLRNTEVMREIQKLYENKSFLFLGCGWTVDDTTFQALFLEAVKHKSDLEHFM
                     LVRRGDVDEFKKLRENMLDKGIKVISYGNDYADLPEYFKRLTCEISTRGRSGMAREGQ
                     LNGSSAAHGEIRGCST"
     exon            94..346
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
     exon            347..574
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
     exon            575..703
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
     exon            704..989
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
     exon            990..1046
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
     exon            1047..1547
                     /gene="Fam118b"
                     /gene_synonym="Ppp4r1l; RGD1307173"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 aaactggatg gcttctacag ggagccaggc ctctgatata gacaagattt ttggattctt
       61 caatgatggc gagcctccca ccaaaaagcc caggaagctg cttccaagtc tgaaaaccaa
      121 aaagcctcga gaacttgtgc tggtgattgg gacaggcatt agtgctgcag tggcaccgca
      181 ggtcccagcc ctgaaatcct ggaaggggtt aattcaggcc ttactggatg ctgccattga
      241 ctttgatctt ctagaagacg aggaaagcaa aaaatttcag aaatgtctcc atgaagacaa
      301 gaacctcgtc catgttgccc atgacctcat tcagaaactt tcccctcgta ccagtaatgt
      361 tcgatccaca tttttcaaag actgtttata tgaagtattt gatgacctgg aatcaaagat
      421 ggaagattct ggaaaacagc tccttcagtc tgttctccac ctgatggaaa atggagccct
      481 agtattaact acaaattttg ataatctcct agaactctat gcagctgacc agggaaaaca
      541 acttgaatcc cttgacctta ctgatgagaa aaaggtcctg gagtgggctc aggagaagcg
      601 gaagctaagt gtgctacaca tccatggggt ctataccaat cctagtggca tcgtcctcca
      661 cccagctgga tatcagaatg tgctcaggaa cactgaagtt atgagagaga ttcagaaact
      721 ctatgaaaac aagtcatttc ttttcttggg ttgtggctgg acggtggacg acaccacttt
      781 ccaggccctg ttcctagaag ctgtcaagca taaatctgac ttagaacatt tcatgttggt
      841 tcgaagagga gatgtagatg aattcaagaa gcttcgagaa aacatgctgg acaaggggat
      901 taaggtcatc tcctatggaa atgactatgc tgatcttcca gaatacttca agcgactgac
      961 atgtgagatc tccacaagag gcagatcagg gatggcaaga gaaggccagc taaatggttc
     1021 atctgcagca catggtgaaa taagaggctg tagtacttga gcaagccgaa gtcgccatta
     1081 gaccatgctg tggggccttc ctgtggatgt gttaacaagc aaacgtgcga gaactcagca
     1141 cagctcctag gaagtaccaa tacccagtga agctcggggt agaatagggg tggcagtgtt
     1201 gcaccttccc tccatgctgg ctgtttctcc atactctgct gcctggtcca gtttaatacc
     1261 caaatgacat caggacccaa tgcagctcct acctacccca aggctggaca ggcttatcta
     1321 cacagcagac caatgtgatg actcctggct atggctccag ctctgcagga ctggaagagc
     1381 aagaagtcat ggagtcagtg ggctcttgtt gcagttttgt actccacttg gtttttcaat
     1441 tgagcttatg gcttttttaa aacatgactc gaagctctag ttttctagat cttttacagt
     1501 gtacagtatt ttacataact gagctgtatt aaaagcttgt tcgttta
//
