LOCUS       NM_001108797            5494 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 117, member B
            (Fam117b), mRNA.
ACCESSION   NM_001108797 XM_001069873 XM_343576
VERSION     NM_001108797.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 5494)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000009.1.
            
            On Feb 17, 2022 this sequence version replaced NM_001108797.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360190.115223.1,
                                           SRR26360190.284646.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760386
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-739               JAXUCZ010000009.1  68834354-68835092
            740-891             JAXUCZ010000009.1  68869691-68869842
            892-984             JAXUCZ010000009.1  68873525-68873617
            985-1098            JAXUCZ010000009.1  68876527-68876640
            1099-1242           JAXUCZ010000009.1  68886828-68886971
            1243-1468           JAXUCZ010000009.1  68888362-68888587
            1469-1589           JAXUCZ010000009.1  68892470-68892590
            1590-5494           JAXUCZ010000009.1  68898639-68902543
FEATURES             Location/Qualifiers
     source          1..5494
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="9"
                     /map="9q31"
     gene            1..5494
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /note="family with sequence similarity 117, member B"
                     /db_xref="GeneID:363236"
                     /db_xref="RGD:1307676"
     exon            1..739
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     CDS             154..1908
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /note="amyotrophic lateral sclerosis 2 (juvenile)
                     chromosome region, candidate 13"
                     /codon_start=1
                     /product="protein FAM117B"
                     /protein_id="NP_001102267.2"
                     /db_xref="GeneID:363236"
                     /db_xref="RGD:1307676"
                     /translation="MSQRVRRNGSPTPAGALAGGAVGPAGGPGSRLQPMRATVPFQLK
                     QQQQHGSPTRGGGGGGNNGGSGGASGPSGGGGGGGPRTASRSTSPTRGGGSAAARTSP
                     TVATQTGASVTSTRGTSPTRGTAPGARSSPPRPQPPPPLLGTVSSPSSSPTHLWPSEV
                     SAAPHPARVRHRRRSPEQGRPSAEKRSPSAPVCKAGDKTRPPSSSPSSIIRRTSSLDT
                     LAAPYLAGHWPRDSRGQATPCMRDKATQTESAWAEEYAEKKKGSHKRSSSWGSTEQLK
                     EIAKLRQQLQRSKHSSRHHRDKERQSPFHGNHAAINQSQAPAPKSTLIPAGPITKSSG
                     SRFRNSVEGLNQEIEIIIKETGEKEEQLIPQDIPDGHRAPPPLAQRSSSTRSIDTQTP
                     GGADKGSNNSSRSQSVSPTSFLTISHEGSEESPCSADDLLADPRDKDNGNNSPLPKYA
                     TSPKPNNSYMFKREPPEGCERVKVFEECSPKQLHEIPAFYCPDKNKVNFIPKSGSAFC
                     LVSILKPLLPTPDLTLKGSGHSLTVTTGMTTTLLQPISMTSLSTNTEQDRVSRGTSTV
                     LPSASLHAPPEPIEEAEG"
     exon            740..891
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     exon            892..984
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     exon            985..1098
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     exon            1099..1242
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     exon            1243..1468
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     exon            1469..1589
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
     exon            1590..5494
                     /gene="Fam117b"
                     /gene_synonym="Als2cr13"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gcggctgcac cacctcgtcg ctgcccgcgc gccccctctt cccgaagtca ggcttcgtca
       61 cccgctggct cgggcctttc ctcgggcccc aagcagcagg tccccgccgc ccagcacccc
      121 cggccgccgt ctttggggcg ggggggggga accatgtccc agcgggtgag gcgcaatggg
      181 tctcccacgc ccgccggcgc cctcgcgggt ggcgcggtcg gcccggccgg gggccccggg
      241 agccgcttgc agcctatgag ggcgacagtg ccgttccagc taaagcagca gcagcaacat
      301 ggcagcccca cgcggggcgg cggcggcggc ggcaacaacg gaggcagcgg aggcgcctca
      361 ggcccctcgg gtggcggcgg cggcggcggc ccgcgcaccg cctcacgcag caccagcccc
      421 acgcgcggcg gcggcagcgc ggcggcgcgc accagcccca cggtggccac gcagacgggc
      481 gcgtccgtga cgtccacgcg cggcaccagc cccacgcgcg gcacggcgcc tggagcccga
      541 agcagtcctc cgcgaccgca gccgccgccg cccctactgg gcaccgtgtc gtcgcccagt
      601 tcgtcgccca cccacctgtg gccgagcgag gtgagtgcgg ccccacaccc cgcccgcgtt
      661 cgccaccgga ggaggtcccc agagcagggt cggccctcgg cggagaagag gagccccagc
      721 gccccggtgt gcaaagcagg tgacaaaaca cgcccacctt cctccagccc ctccagcatt
      781 atccggcgta cttcctccct ggataccctt gcagctccat accttgctgg gcactggccc
      841 cgagacagtc gtgggcaagc cacaccctgc atgagggaca aggccacaca gaccgagagt
      901 gcgtgggctg aagagtatgc tgaaaagaag aaagggtctc ataaacgctc atcatcctgg
      961 ggcagtacag aacagcttaa agagattgca aaattacgcc agcaactgca gagaagcaaa
     1021 cacagcagcc gtcaccatcg agataaagaa aggcagtctc cattccatgg caaccatgca
     1081 gctattaacc agagccaggc tcctgctcca aagagcacgc tcattcccgc tggccccatc
     1141 accaagtcct caggctcccg gttccggaac agtgtggaag ggctgaacca ggagatcgag
     1201 atcataatca aagagacagg ggagaaggaa gaacagctga ttccacaaga tatcccagat
     1261 ggtcatcgtg cgcctccacc cctcgcacag agaagcagca gcacacgcag cattgacaca
     1321 cagactcctg ggggtgcaga caagggaagc aacaacagca gccgctctca gtctgtgtcc
     1381 ccgacatcct tcctcaccat ctctcatgaa ggcagtgagg agagtccctg ttcagctgac
     1441 gacctgcttg ccgatcccag agataaagac aatggaaaca actctccttt gccaaaatat
     1501 gcaacctcac caaaacctaa caacagttac atgttcaaaa gggaacctcc agagggctgt
     1561 gaaagggtca aagtctttga ggaatgctcg ccaaagcaac ttcatgagat tccagccttt
     1621 tactgtcccg acaaaaacaa ggtgaatttt attcctaaaa gtggctctgc tttctgcctc
     1681 gtgagtatcc tcaaaccact tcttcctaca ccagatctta ccctcaaggg ctctggtcac
     1741 agcctgaccg tcaccactgg catgaccacc actttgctcc agcccatctc tatgacctcc
     1801 ctgtctacaa acacagagca agaccgggta tctcgaggaa ccagtacagt cctgccgtcc
     1861 gcttccctcc atgcaccacc agaacccatc gaggaagctg aaggataggg ctcagcttga
     1921 gctatgggtg ctgggaatta agaaccctgc aggtcacatg actgtgatgg tatcatgtcc
     1981 tcccggttgg ctgtgaagtg ctttggcttt ccagtgatgt gaaacagcaa ggctcctgga
     2041 aggactcgtg gtcccctgag tgctctgccc tgcacgtgaa ggccactgac gtgcttcacc
     2101 ttcttggcct tgaagcacca gctgaaacct gaaaggtctc ttctttactt ttggaggaac
     2161 aaaatcacat tttcatttgt tttcaaatta gacctgttta aaaacaaaac aaagacccac
     2221 aaaaccggat ccctgcaaac ataatttctg aagggagata tgattgatgc tgcaagaaaa
     2281 tcatctttta tatgaaaacg actattttat aataccaatg tcacattttc tcaaagtagc
     2341 aaacaggacg ttccaatgat cctctggtgg cctctgtttc ttgtttcctt tttctagata
     2401 ttgcttttct cagctgtttt cagctttggg accaaaggga ttgctgacat ttccccagca
     2461 atgtcaatct catgactgtg ttcttctccc aagtaagaat tgataggtaa atgcattgaa
     2521 ccaagtatat ataaaaaaga tcaaaagcaa tattcgtaca ttatgtgatt tatgtttttt
     2581 tatgtcaaaa gtttgtgatt tgagtgaagt atttgtaaac tgctgttttc tgaactatcc
     2641 ctgtccacac ttcaccttgt ggtcagtcag tctgaagaca ggttgcttta acagtcagtg
     2701 agccaaaaga aactctgaag tgtggattgt tagctaggag tatggagctc tctggtcttc
     2761 tgtgagctgt gtgtcccgtg gtgccctccc cgccgggtgt cagtctaact ttgatcatca
     2821 ctgtatcata tagccccaag agaccctgaa aaggctgtgc atggattccc tcctctgctt
     2881 ctgtggtggt gttgtcttgt ggatttggtc agggttagta gttttccaag agtgtgatcc
     2941 attgagtagc aattgggagc tgcagaaatc ttttgaggac tgacttcctt catgtgttgg
     3001 cgctgtgatt tgctacttac agattttgct agtttcttct ccaacattcc atacactggg
     3061 ggaaagacaa gaggctggga gcttaggcag caggtacctt tgaaaagtat acagttttgg
     3121 atttgagctc atctggtaac cattgccagt atcacatgac agtatttaat ttctaggtgc
     3181 gtgataataa aattaaggag ctgctcttta gaaatgaatt ccatcagtgt tggtaaagca
     3241 ctgttttaat acatgctaac ttatactgct gcatacaaca ggtggatggc aagccctgca
     3301 tgagagggac acagttttga aggcgaattc catccactgg tccaagtcat tccatcagga
     3361 gaaaccaaga gatagcagta catcttcttg gcaaggtttt tgtcacctca ggatgcctcg
     3421 gaaacttaaa gtaggctctg ctcagcttta agtaaggata tttaggttta ttggataaat
     3481 tcaaacatct aagtaaaatc catcagtttt ggttgggaaa actgaaactt tttggtactt
     3541 gccacccaaa gcttaacttc tgggaactag taaatcatag cttcttagtc agtaaaagcc
     3601 tcagttgttt ggtgtgtagg ctttttgttt ggtgggtttt ttttgtacct tgatttttct
     3661 ccctgtcggg ccttttgact ttaccatttt atcaggatcc agaagtacag aagaaagagg
     3721 actggcagtc cattgagctg acctgaaggg agaggaggca tttaaaagca agggttcttg
     3781 ttttgtttgt ttttgaggtg gctcttatta tgtagcccag gctggcctgg cactcatgcc
     3841 tctcccaagt gctgggatta gtggcgtggg ccactgcacc atgcgtgtct tctttttaat
     3901 gctgtggttc cccacctgaa tgctgtcaag tgggtgttct tcttccttat ctataccacc
     3961 tcttctctcg atttacaagt atagtttact ctgcaataga tttcttccct tttctgttat
     4021 acttgtttgg cctcgtcctt gaaataacac agagagggac aggtttcagg tcagcatctg
     4081 ctcctagaag tagaacttaa gtttgaggtt tggctggaag aagactgtga atttgtaagt
     4141 aaatgaatta tatggtgacc aaacactcct gagatctgaa gaaaaacaaa aaaggtctat
     4201 gtccaaaaaa acaactctta actgccaggg ccaaagggct aatttttaag catatgagct
     4261 ttatttgcag tcttagcata tattaaccgt agatccacct agctgtttta tttaactctt
     4321 aattcccagg tgcttggttt taaaaatggg tctactctta gtagagtggg catgattaca
     4381 ctgacaagcc acactccata attaggttat tctgtagaaa ctgtacagag gtagagtagc
     4441 ttcagtgcaa atacagtctt tcccagtgct ggggatgaaa cccagggcct cgtgcatgct
     4501 gagcaagtgc tctgtcgctg gcttatttcc cagttcctca tttaaattct taattaaaaa
     4561 ccattttgtt ccattgcagt aaaagtgggt ggcatgtgta ttttttggct aaagcactgt
     4621 tcctggccca tcttagttct acttgaccct ccagcagttt cctccctgcg gtgataaacc
     4681 tcaggtttat agcttctgac tcggtaagtc tgttacttat cactggttta caggcagttg
     4741 tgtttaaaac actagtaggt ttgctttctt tggttaaata tagtgggaat gtcaattttt
     4801 tttctaccag gttcttcatt tttgtttaca gggtttctta gacctaggac cataaccaat
     4861 ctgcctctct gtctgtagat gctgttgctg actggggtgg gtctggcaac ggggaaggct
     4921 gctttttatt cttacttttt aatgttttca ttaaagaaac agtcagcttt tcctagaagg
     4981 tctaaaaaaa aatggcacaa tatagagctt tctctgtatg ggatttgaac tgagatcttg
     5041 aggttttctt tcaaggaaac taaagtaaaa ttgacattac tgaatttgtg aagttgagat
     5101 tcattcctaa atactgggtt tggggtgtgt caaaactgga ccagtggaag tgctgaattt
     5161 gcaaagtaaa gccaagatac ttaagtctgc actttaaggc ttctggtcgc tctgccttca
     5221 ttagtgactc cgcagagtgg ctctgaacag tattttgttt atacagtcct gttggagata
     5281 tataatttat gttttttaaa ctctgcatct ttgtctctgt tggtgtaaat cttttttaat
     5341 gcaatttttt aaagttataa cagaattctt cccccaaaaa aacagcattt ccagcgatga
     5401 taagtattgt gttgtggact gtccctgcac ctgagcactt actgcttccg acagggggag
     5461 actcctgtgt tcaaataaag tctgttgttc tcga
//
