LOCUS       NM_001109039            2325 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 117, member A
            (Fam117a), mRNA.
ACCESSION   NM_001109039 XM_001081251 XM_573179
VERSION     NM_001109039.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Gaudet,P., Livstone,M.S., Lewis,S.E. and Thomas,P.D.
  TITLE     Phylogenetic-based propagation of functional annotations within the
            Gene Ontology consortium
  JOURNAL   Brief Bioinform 12 (5), 449-462 (2011)
   PUBMED   21873635
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1, JACYVV010000288.1, CB696283.1 and CB584411.1.
            
            On Mar 15, 2021 this sequence version replaced NM_001109039.1.
            
            Sequence Note: This RefSeq record was created from transcript and
            genomic sequence data to make the sequence consistent with the
            reference genome assembly. The genomic coordinates used for the
            transcript record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26643429.38534.1,
                                           SRR26643299.45067.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760383, SAMEA5760389
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on single protein-coding transcript
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-243               JAXUCZ010000010.1  80778229-80778471
            244-413             JACYVV010000288.1  72266-72435
            414-509             JAXUCZ010000010.1  80812160-80812255
            510-620             JAXUCZ010000010.1  80815205-80815315
            621-887             CB696283.1         159-425
            888-1287            CB584411.1         194-593
            1288-2325           JAXUCZ010000010.1  80821082-80822119
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q26"
     gene            1..2325
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /note="family with sequence similarity 117, member A"
                     /db_xref="GeneID:497983"
                     /db_xref="RGD:1561062"
     exon            1..243
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     CDS             48..1406
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /codon_start=1
                     /product="protein FAM117A"
                     /protein_id="NP_001102509.2"
                     /db_xref="GeneID:497983"
                     /db_xref="RGD:1561062"
                     /translation="MSGAAAGGRGGGSWGPGRGGAGCLRRGCSPPAPAGSPRVGLQPL
                     RATVPFQLQQPHQRRDGGGRAASVPCSVAPEKPVCRPQPPQVRRTFSLDTILSSYLLG
                     QWPRDADGAFTCCTNDKATQTPLSWQEPEGERASFCMHKRSASWGSTDHRKEITKLRQ
                     QLQRTKLSRSGKEKERSSPVQGDHAVLGAVRVSLPSLPAGSPVLRLSPCLHRSLEGLN
                     QELEEVFVKEQGEEELLRILEVPDGHRAPAPPQNSNCDHPLLLEPGNLTSSPSMPLVS
                     PQPPGQASREHHQSATEELASIHGNKASSAGHPAFLEDDSPSPVLAFAASPRPNHSYV
                     FKREPPEGCERVRVFEEATSPGPDLAFLTSCPDKNKVHFNPTGSAFCPVSLIKPLFPS
                     MGFIFRNCPSSPGSPLPPASPRAPPRKDPEASKASSLPFEPWQRTPPSEESVLFQSSL
                     VV"
     exon            244..413
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     exon            414..509
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     exon            510..620
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     exon            621..755
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     exon            756..954
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     exon            955..1105
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
     exon            1106..2325
                     /gene="Fam117a"
                     /gene_synonym="RGD1561062"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 agtgtggggc tcgctgtggg gctgaagcac aggtagccgg gtgggccatg tccggggctg
       61 cagcgggcgg ccgaggtgga ggttcctggg ggccggggcg cggaggggcg gggtgtctcc
      121 ggcggggctg ctcaccaccg gcgcccgctg gctccccccg ggtcggtctg cagccactca
      181 gggctacggt ccccttccag ctgcagcagc cgcaccagcg ccgggacggg ggtggccgcg
      241 cagctagcgt cccgtgttcg gtggccccgg aaaagccagt gtgtaggccc cagccacccc
      301 aggtccgacg tactttctcc ctggacacca tcctcagttc ctaccttctg ggccagtggc
      361 cacgagatgc agatggggcc ttcacctgct gtaccaatga caaggccacc cagacacccc
      421 tatcctggca agagccagaa ggtgagcggg ccagcttctg catgcacaag cgatcagcat
      481 catggggtag cacagaccac cgaaaagaga tcaccaagtt gaggcaacag ctgcagagga
      541 caaagctgag ccgcagtggg aaggagaagg agcggagctc ccctgtccaa ggggaccatg
      601 ctgtactggg agcagtgagg gtatcccttc ctagcctccc cgcaggatcc cccgtcctga
      661 gactcagccc ttgtctgcac agaagcctag aagggctcaa ccaggagctg gaagaggtgt
      721 ttgtgaagga gcaaggtgaa gaggagctgc tgaggatact tgaggttcct gatggacatc
      781 gtgccccggc tcctccacag aatagcaact gtgaccaccc gctcctcctg gagccaggca
      841 acctgaccag ctctccctcc atgccactgg tatcccccca gcctcctggc caggccagcc
      901 gcgagcacca ccagagtgcc acagaggagc tggcatctat ccacggtaac aaagcctctt
      961 ctgcaggcca cccagccttc ctagaagacg acagtccttc tccagtcctt gcctttgctg
     1021 cttcccctcg gcccaatcac agctatgtct tcaaacgaga gcccccagaa ggctgtgaga
     1081 gagtgcgtgt gtttgaggag gccacgtccc caggtcctga cttggccttc ttgacttcct
     1141 gtcctgacaa gaacaaagtc catttcaacc cgactggctc tgccttctgc cctgtcagct
     1201 tgatcaagcc cctctttccc agtatgggct tcattttccg taactgcccc tccagccctg
     1261 gctctcctct ccctcctgcc agccccaggg caccacctcg gaaggatcca gaagcttcca
     1321 aggcctcctc gctgccattt gagccatggc agcgcacgcc accatcagaa gagtctgtgc
     1381 ttttccagag ctccttggta gtctgagtcc cccagacccc taccacactt taccatggag
     1441 aatagtgcct tggtggcaag ctcttcattg gctttccaag ctgggggatg gaggagccct
     1501 tccctcttgg cctttgagca ctttcattaa ttgtgtcaaa gccccaggtc ctttggtgga
     1561 catcagcccc tccaaaaggg aggagactta cctcctccgc tagcagctag gcagctcaca
     1621 actgtgtacc tgcagcttcc ctcacccact agaaggtctt gaatcttcca gcccagagtg
     1681 tgagttcaaa tgacttttaa gaggctcttg tcatggaaca cgttggctgt gactgagaaa
     1741 ggaaggggaa atgccacagg ctttctgaca gttccacttc tagagacaca gaaaggcaga
     1801 ccagatagat gcctccttcc tagaggagct gaccagagtg gtcctcgggg ccagaacact
     1861 tgaccaatcg tctgttggca ggggaccacg agatttccca agtggcattt tcatctcagt
     1921 tttaccctga ctgaagattg tcttaagcag catcccggcc caaaatgaag agtgggaaga
     1981 aggatctggc actcctccag ggggcatgta gcagccacat accctccacc tgccccaggg
     2041 gacacatagc agctccatat cctctaccca ccccagggtt ggattgaatt agaaaaatgc
     2101 ctatttttct tgtattgatg tagaaactct attttcaccc aaagacacta tttttgcagc
     2161 tatttgaagt ttgtatattt tccgtactgc agagcttact caaaattgaa gaatgttaat
     2221 gttagaggtt tcttatctta tgtttagagg ttattgtggg tttttttgtt tgtttgtttt
     2281 ttgcagatct tgatttatta gaccaaataa ataagtgttc cagca
//
