LOCUS       NM_001402010            2588 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 114, member A2
            (Fam114a2), transcript variant 1, mRNA.
ACCESSION   NM_001402010 XR_005490235
VERSION     NM_001402010.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Mar 3, 2022 this sequence version replaced XR_005490235.1.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360186.681685.1,
                                           SRR26360176.1929774.1 [ECO:0000332]
            RNAseq introns              :: mixed sample support SAMEA5760475,
                                           SAMEA5760476 [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-103               JAXUCZ010000010.1  42197155-42197257   c
            104-297             JAXUCZ010000010.1  42192497-42192690   c
            298-400             JAXUCZ010000010.1  42192049-42192151   c
            401-493             JAXUCZ010000010.1  42191662-42191754   c
            494-582             JAXUCZ010000010.1  42187605-42187693   c
            583-717             JAXUCZ010000010.1  42185713-42185847   c
            718-876             JAXUCZ010000010.1  42185087-42185245   c
            877-1000            JAXUCZ010000010.1  42183619-42183742   c
            1001-1080           JAXUCZ010000010.1  42178510-42178589   c
            1081-1203           JAXUCZ010000010.1  42171478-42171600   c
            1204-1343           JAXUCZ010000010.1  42170409-42170548   c
            1344-1416           JAXUCZ010000010.1  42168903-42168975   c
            1417-1470           JAXUCZ010000010.1  42165364-42165417   c
            1471-2588           JAXUCZ010000010.1  42162295-42163412   c
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q22"
     gene            1..2588
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /note="family with sequence similarity 114, member A2"
                     /db_xref="GeneID:303155"
                     /db_xref="RGD:1305362"
     exon            1..103
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            104..297
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     CDS             118..1593
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /note="isoform 1 is encoded by transcript variant 1"
                     /codon_start=1
                     /product="protein FAM114A2 isoform 1"
                     /protein_id="NP_001388939.1"
                     /db_xref="GeneID:303155"
                     /db_xref="RGD:1305362"
                     /translation="MADKDATETPAVTEAASILKDENCEPVEKPENKCQPAVSTRKRP
                     ETRPSSDLEASELPAQQETASKDASQTGWGYWGSWGKSLLSSASATVATVGQGISNVI
                     EKAETSLGIPSPTEISAEVKQAAGETSASENGSLLVSGPFGMLSTISTAVQSTGKSVI
                     SGGLDALEFIGKKTMDVIAEGDPGFKRTKGLMIRNSTLSQVLREAKDKEEQWPSNEVT
                     METDKKTHYGLLFDEFQGLSHLEALEMLSRESEIKVKSILSSLSGEELQTTRLELEQL
                     KEAFSLAEFCEEEEEERQGDEDFTKEITELIAQLHVSSRPEKLARARNTAYEWIRTSL
                     AKPVAEKEEGEKQLEAENTEEAQKHSIEDIHAFAIRSLAELTACSIELFHKTAALVLH
                     GQKQEVTALERSQTLSQMTVMLCKDLASLSKEFTTCLTTAGVKEKADVLNPLITAVFL
                     EASNSASYIQDAFQLLLPVLQISLIENKTESPDVSHQPRDL"
     exon            298..400
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            401..493
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            494..582
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            583..717
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            718..876
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            877..1000
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            1001..1080
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            1081..1203
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            1204..1343
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            1344..1416
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            1417..1470
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
     exon            1471..2588
                     /gene="Fam114a2"
                     /gene_synonym="AABR07029651.1; RGD1305362"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 ccgcctccga gaggaggtca ggaatacttc cgtgactgtc ggatcggcga gcaggcggcg
       61 gtggccgcgg tgaggggcgg tgtcgggact gcggggcttc ccggtgatgc tgcagtcatg
      121 gcagataagg atgctacaga gactccagcg gtgaccgaag cagcctcgat ccttaaagat
      181 gagaactgcg agccagtaga gaagccagag aataaatgtc agcctgcagt gtccacccgg
      241 aaaagaccag agaccagacc ttccagtgac ctggaggcct ctgaacttcc tgctcagcag
      301 gagactgctt ctaaagatgc atctcagact ggatggggct actggggcag ttggggcaag
      361 tctctactct cctcagcctc agctacagta gctacagtag gacaaggtat ttcaaatgtc
      421 attgagaagg cagagacttc tcttgggatt cctagcccca ctgaaatttc agctgaagtc
      481 aagcaagcag caggagaaac aagtgccagt gagaatggaa gcttactagt gtctgggcca
      541 ttcgggatgc tctcgaccat ctcaacagct gtgcagagca cgggcaagag cgttatcagt
      601 ggaggtttgg atgccttgga attcattggg aagaagacaa tggatgtcat agcagaaggg
      661 gatcctggat ttaaaagaac caagggcctg atgatccgga attctacact gtcacaggtt
      721 ttacgagagg caaaggataa agaagagcag tggccttcca atgaagtaac catggaaaca
      781 gacaagaaaa ctcattatgg gctactcttt gatgagtttc aaggcctttc acatctagaa
      841 gctctggaga tgctttcccg agaaagtgaa ataaaggtga aatctatcct tagttctctg
      901 agtggagaag aactacagac aactagactt gagctagagc agctcaaaga agccttttcc
      961 ctagcagagt tctgtgagga agaggaggag gagagacaag gggatgaaga ttttaccaag
     1021 gagataacag aactgattgc tcagcttcat gtctcttccc gaccagagaa acttgccagg
     1081 gcaagaaata cagcctacga atggatcagg acgtctctag ctaagccagt agcagagaaa
     1141 gaagaagggg aaaaacagtt ggaggcagaa aatactgagg aagcccagaa acattcaata
     1201 gaggacatcc atgcatttgc aatccggagc ttagcagagt tgactgcctg ctcaattgaa
     1261 ttgttccaca aaacagcagc gttggttcta catggccaga agcaggaggt gacagcctta
     1321 gaaaggagcc agactctctc ccagatgaca gtcatgctgt gtaaagactt ggcctctctg
     1381 tctaaagagt tcaccacctg cctgaccaca gctggggtca aagagaaggc agatgttctc
     1441 aacccgttaa tcaccgcagt gtttctagag gcctcaaaca gtgcctccta cattcaagat
     1501 gccttccagc ttctcctgcc tgtgctgcag atctctctca tcgagaacaa gacagagtca
     1561 ccagatgtga gccaccagcc cagagacctc tgacagagca ctgaggagca gaggagaggc
     1621 tgcctgagat tgtgatagca gagactctga ctttgctcca ggacgccctg cagccagacg
     1681 gagacatagt cctgagtgtg tgagagcgca ggcagggcgc aggctcacgg tgctcggctg
     1741 ctcacactgc tcttcccagc cttataagta atacattatt taaaaaaaca tatttcagga
     1801 aagtcagcgg gacattctgg cagaaatgct ggattttctt acaaagatca gaaaacacta
     1861 aaggctggca tggatgtcat ttacagccag tggtataatt gttaaacagg agagaacaaa
     1921 acctcaattt gctgtcctgc ggtttatgac attcttcgta ccctgggttt tttcctttcc
     1981 ataataaagc ctgtggcttt tagagagctg acactccatt ggccctaagg cagatggtca
     2041 gacagagctg tcctcccttc acctctagat gcttggcatg gagtagaaac tcctagccat
     2101 ggtgtgaacc ccagcaaagt gccctttagc ttcaaatggc tctcttccca gtgagaccat
     2161 gcagctgcat gtctgctcgt gcgctgagtc tcttcaggct gcgctgtgca gacgctgcct
     2221 gaggctgcgt ccatgcaggg cacgttcttc agctgccaac cccagagcgg gaggaagctc
     2281 ttttggcgat ggggctttgt tgagtcctat gaagatgctc acttacgaca ggacttagcc
     2341 tcagatgttt cccctcatta ttccctgttt taatgtactt gttactgtgc tttgggaaaa
     2401 gctcaactgc catcctgtac tcttgagtct tctttgcaaa tttcaacagt taagagctgt
     2461 tttggtatcc aggctttttg aaaatgttcg ctaactttgt ggtttttagt aactctggta
     2521 acttttgaga gccccatcct tcatctttga aaaccattac aataaagtat aattatgcct
     2581 acttataa
//
