LOCUS       NM_001109163            3191 bp    mRNA    linear   ROD 03-APR-2024
DEFINITION  Rattus norvegicus FAM111 trypsin like peptidase A (Fam111a), mRNA.
ACCESSION   NM_001109163 XM_001076464 XM_574627
VERSION     NM_001109163.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Alabert,C., Bukowski-Wills,J.C., Lee,S.B., Kustatscher,G.,
            Nakamura,K., de Lima Alves,F., Menard,P., Mejlvang,J.,
            Rappsilber,J. and Groth,A.
  TITLE     Nascent chromatin capture proteomics determines chromatin dynamics
            during DNA replication and identifies unknown fork components
  JOURNAL   Nat Cell Biol 16 (3), 281-293 (2014)
   PUBMED   24561620
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Fine,D.A., Rozenblatt-Rosen,O., Padi,M., Korkhin,A., James,R.L.,
            Adelmant,G., Yoon,R., Guo,L., Berrios,C., Zhang,Y.,
            Calderwood,M.A., Velmurgan,S., Cheng,J., Marto,J.A., Hill,D.E.,
            Cusick,M.E., Vidal,M., Florens,L., Washburn,M.P., Litovchick,L. and
            DeCaprio,J.A.
  TITLE     Identification of FAM111A as an SV40 host range restriction and
            adenovirus helper factor
  JOURNAL   PLoS Pathog 8 (10), e1002949 (2012)
   PUBMED   23093934
COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
            NCBI review. The reference sequence was derived from CH473953.1.
            
            On or before Oct 4, 2007 this sequence version replaced
            XM_001076464.1, XM_574627.2.
            
            ##Evidence-Data-START##
            Transcript exon combination :: FQ230484.1, FQ226103.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMD00132261, SAMD00132262
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression,
                                      longest protein
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /map="1q43"
     gene            1..3191
                     /gene="Fam111a"
                     /gene_synonym="RGD1560913"
                     /note="FAM111 trypsin like peptidase A"
                     /db_xref="GeneID:499322"
                     /db_xref="RGD:1560913"
     exon            1..56
                     /gene="Fam111a"
                     /gene_synonym="RGD1560913"
                     /inference="alignment:Splign:2.1.0"
     exon            57..259
                     /gene="Fam111a"
                     /gene_synonym="RGD1560913"
                     /inference="alignment:Splign:2.1.0"
     CDS             179..2011
                     /gene="Fam111a"
                     /gene_synonym="RGD1560913"
                     /note="family with sequence similarity 111, member A"
                     /codon_start=1
                     /product="FAM111 trypsin like peptidase A"
                     /protein_id="NP_001102633.1"
                     /db_xref="GeneID:499322"
                     /db_xref="RGD:1560913"
                     /translation="MSSKKRKSQKIPFNTRKNKKIKDYFSQVPKEEQNDPSISQVKVD
                     SKKMPRDITNTRNQRPLSPKKTQQDQTPPLYKKILVTLGVNARKHKNMKHVLTDRETS
                     SLYAALNSLSAVKEEIECQKGKEMLVCGKEGIEGYLNLGMPLCCIPEGSHVIITFCQC
                     KSKTEETKQFFEPQDQASTNYVRFYIHAVGSKRKKILKCGELHKEGNKVCVYGSKGEN
                     IRDTLRKDGRFCSFIENDHWKLINDLDTIIENTQPVDELEGKLFQVAAELPKNPRVVS
                     VMQNSGLENRDFHKLEDYIVNANPTLKEEGEKLRAYIKKESKKSSLFKVHKEHFGKIT
                     KNSTPVKVHKHLSKVSDSVGFLWWNNNGKEGCATCFVFKGLYILTCRHVITSIVGEGI
                     DPCQWASLISQCVKVTFGYEEFPLVEDKFFEVKPWFEISNESLDYAVLELRENGQEVP
                     AGLYNGIGPVPLSGLIYLIGHPDGEKKSTDGCAVVPQSHRGQKCQENFQEREKANYWI
                     STSFFPIYTQRSFHEVFHNHDVVTYDTTFFGGSSGSPVFDSNGSLVAMHAAGITCTDQ
                     NGVFNIIEFGFTMESILANIKQTKEWYDTIFVNDRDAEMLSTDS"
     exon            260..3191
                     /gene="Fam111a"
                     /gene_synonym="RGD1560913"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 caaaaagacg cgggattcta gcggctggag agaaggtgcc agtgtggaaa gatctggttg
       61 aggacaaagc ctgggccttg taattggtag tctaccactg aagtcaattt ctaccccaac
      121 ttgaaccatt ttggagtttg tgtttcagct gagccatcta tttcatctct aagccacaat
      181 gagttctaag aagcgcaaat cacagaagat cccatttaat accaggaaaa ataaaaaaat
      241 caaagactat ttctctcagg ttcccaaaga agagcagaat gatcccagta tttctcaagt
      301 aaaagtggac tctaaaaaaa tgccaaggga tataaccaac accaggaacc aaagaccact
      361 ttcacctaag aaaactcaac aagatcagac tcctccccta tataagaaaa ttctggtcac
      421 cttgggtgtg aacgctagga aacacaaaaa catgaaacat gtgctcacag atagggagac
      481 aagtagcttg tatgcagcac ttaacagtct cagtgctgtc aaagaagaga tagaatgcca
      541 aaagggcaaa gaaatgctgg tatgtggcaa agaaggaatt gaaggatact taaaccttgg
      601 catgcccctc tgctgtatac cagaaggcag ccatgtgatc attacatttt gtcaatgtaa
      661 aagtaagaca gaagaaacta aacaattctt tgaaccacag gaccaagcat ctaccaatta
      721 tgtccgattt tacattcatg cagttgggag taagaggaaa aagattctga agtgtgggga
      781 acttcacaaa gaggggaaca aagtctgtgt ctatggctcc aagggagaga acatcagaga
      841 cactctgagg aaggacggca ggttttgttc tttcatagag aatgaccatt ggaaactcat
      901 taatgacctg gacactatca tagaaaacac tcagccagtt gatgagttag agggcaagct
      961 ctttcaggtt gcagctgagc taccaaagaa ccctagagta gtctctgtca tgcagaattc
     1021 tgggttagag aacagagact tccataagct agaagactat attgtgaatg cgaaccctac
     1081 attgaaagaa gaaggagaaa aactcagagc atacatcaag aaagaaagta aaaaaagttc
     1141 cttattcaaa gtgcataaag aacactttgg gaaaataaca aaaaattcta ctcctgttaa
     1201 agtgcacaaa catctttcga aagtcagtga ttcagttggg ttcctatggt ggaacaacaa
     1261 tggaaaggag ggctgtgcca cctgctttgt ttttaaagga ttatacattt tgacttgccg
     1321 gcatgtgata actagtattg tgggtgaagg catagatcca tgtcagtggg caagcttaat
     1381 tagtcagtgt gtaaaggtga cctttggtta tgaagagttc ccactagtag aagacaagtt
     1441 ttttgaggtt aaaccttggt ttgagatatc taatgaaagc cttgactatg ctgtcctaga
     1501 actgagggaa aatggacaag aagttcctgc tggactgtat aatggaatag gacctgtgcc
     1561 acttagtggg ttaatatatc tcattggcca tcctgatgga gaaaagaagt ctactgatgg
     1621 ctgtgcagtg gtccctcaaa gtcatagagg gcaaaaatgt caggaaaatt ttcaagaaag
     1681 agagaaagca aactactgga tttctacatc ttttttccct atatacacac aaagaagttt
     1741 ccacgaagtc tttcacaacc atgatgtggt tacttatgac accacttttt ttggtgggtc
     1801 ttctggatcc ccagtatttg attctaatgg ttcattggtg gccatgcatg ctgctggcat
     1861 cacttgtaca gaccagaatg gagtttttaa tatcattgag tttggtttta ctatggaatc
     1921 cattcttgct aatattaagc aaactaaaga gtggtatgat accatttttg taaatgatcg
     1981 ggatgcagaa atgctgagca cagactcctg aggactggaa agggtgtatt ctagttcaca
     2041 actttatggg aattgcctaa ggtgtttttc ttcagataat aatgttttat gaactttcaa
     2101 aatgattaat ttcacccaat aatcatagtt ctagagtgta tcttaactat caagcatttt
     2161 catggtttat taaaacaaac aatcaaaaac aaaactatca attgaactat ttgtgtaaag
     2221 tagcatgaaa aagaggatta agtgctgatg tgggatccga gggtcaggag atgctaagat
     2281 gtgaaaaagt tgagagcata aactggagtt attagccaga agactcatgg aaaagaaaga
     2341 agccaaccac gttccttgaa acttaaacca atttcaaact cactcatttg gttctaccca
     2401 tatcttcctt ctctgctgac cagagctcag ccaggacacc gaatcacagc gacttaaccc
     2461 tcctaggtcc ctgaacatgg tggcatttct tccattttgt ctttttaact taagacttag
     2521 atctgaaatg aacccacatg aagtggcatg gaaatcattg agcaagcaag gagctggtct
     2581 ctgccacaga atgcatgtac ctgagacttt ctggacttga gttgtggaga gcaaacatgg
     2641 gaataggtgg tttctacttg atacgattca caatggagag tgctaggagg atattggaca
     2701 caacctagga caattctcag cagtgtgaca ctcaagtctt ggtcctttga agagaaagaa
     2761 aactgcgttc aagaagtaat ctcatcaaaa acagagtcaa ggagaattta tgaacagaag
     2821 gccagagatc ttagattatt tgagagaaag taggagtaga tgagatgctg aaggaatgtt
     2881 gctgggatcc agcgattgct tcaattcttc ctttatcata actgaaatat gtcctgtatg
     2941 agagctaaca tgatcctaat ccacaactcc ccttattttc cagacatttc ctagtgctat
     3001 tgtgtgatat tttgtgtccc ctgcccaatg tatttttccc aaatcaaata caggtgaatc
     3061 aattaaaaaa cagtgtaata tctgtagtag gttttgaaat ataagatgaa aaaattattt
     3121 gtatggcatt cccattgttt tggcccaaat actcattctc aatattataa agtaataaat
     3181 gttgttttta c
//
