LOCUS       NM_001401503            3108 bp    mRNA    linear   ROD 24-APR-2024
DEFINITION  Rattus norvegicus family with sequence similarity 107, member B
            (Fam107b), transcript variant 2, mRNA.
ACCESSION   NM_001401503 XM_008771882
VERSION     NM_001401503.1
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 3108)
  AUTHORS   White,J.K., Gerdin,A.K., Karp,N.A., Ryder,E., Buljan,M.,
            Bussell,J.N., Salisbury,J., Clare,S., Ingham,N.J., Podrini,C.,
            Houghton,R., Estabel,J., Bottomley,J.R., Melvin,D.G., Sunter,D.,
            Adams,N.C., Tannahill,D., Logan,D.W., Macarthur,D.G., Flint,J.,
            Mahajan,V.B., Tsang,S.H., Smyth,I., Watt,F.M., Skarnes,W.C.,
            Dougan,G., Adams,D.J., Ramirez-Solis,R., Bradley,A. and Steel,K.P.
  CONSRTM   Sanger Institute Mouse Genetics Project
  TITLE     Genome-wide generation and systematic phenotyping of knockout mice
            reveals new roles for many genes
  JOURNAL   Cell 154 (2), 452-464 (2013)
   PUBMED   23870131
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000017.1.
            
            On Feb 14, 2022 this sequence version replaced XM_008771882.3.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on transcript alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: SRR26360194.1075800.1,
                                           SRR26643297.49153.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760434 [ECO:0000348]
            ##Evidence-Data-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-179               JAXUCZ010000017.1  79449818-79449996   c
            180-363             JAXUCZ010000017.1  79395693-79395876   c
            364-514             JAXUCZ010000017.1  79391197-79391347   c
            515-3108            JAXUCZ010000017.1  79387795-79390388   c
FEATURES             Location/Qualifiers
     source          1..3108
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="17"
                     /map="17q12.3"
     gene            1..3108
                     /gene="Fam107b"
                     /note="family with sequence similarity 107, member B"
                     /db_xref="GeneID:498796"
                     /db_xref="RGD:1561482"
     exon            1..179
                     /gene="Fam107b"
                     /inference="alignment:Splign:2.1.0"
     exon            180..363
                     /gene="Fam107b"
                     /inference="alignment:Splign:2.1.0"
     CDS             236..631
                     /gene="Fam107b"
                     /note="isoform 1 is encoded by transcript variant 2;
                     protein FAM107B"
                     /codon_start=1
                     /product="protein FAM107B isoform 1"
                     /protein_id="NP_001388432.1"
                     /db_xref="GeneID:498796"
                     /db_xref="RGD:1561482"
                     /translation="MAEPDYIEDDNPELIRPQKLINPVKTSRNHQDLHRELLMNQKRG
                     LAPQNKPELQKVMEKRRRDQVIKQKEEEAQKKKSDLEIELLKRQQKLEQLELEKQKLQ
                     EEQENAPEFVKVKGNLRRTGQEVAQAQES"
     exon            364..514
                     /gene="Fam107b"
                     /inference="alignment:Splign:2.1.0"
     exon            515..3108
                     /gene="Fam107b"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 gccacttaat tctgacgcgc gaggccgccg ggtgcgagag ccgccctgag ccggacgggc
       61 ttcgtactcg ggcgttgcaa ccgctgtcgg aaccgccctc tctccacctc ggtggccaag
      121 gtgccgggta ccaacgccag cagcggagcg cgccagggag cagcgcgcct ttgtgcgaga
      181 cggcccgctt gaggacattg accccaaaga ctcctgtctc attccaagaa acatcatggc
      241 cgagccggac tacatagaag atgataatcc tgagctaatt aggccccaga agctgatcaa
      301 tcctgtcaaa acatcccgaa accaccagga cctccacaga gagcttctta tgaatcaaaa
      361 aaggggtctt gctcctcaga ataaaccaga gctgcagaag gtgatggaga agaggaggcg
      421 tgaccaagtg ataaaacaga aggaggagga ggctcagaag aagaagtccg acctggaaat
      481 agaactgttg aagcgacagc agaagctgga gcagcttgaa cttgagaagc agaaattaca
      541 agaagagcaa gaaaatgccc cagagtttgt gaaggtgaaa ggcaatctca ggagaacagg
      601 ccaagaggtg gcccaggccc aggagtccta ggcccaggct gtgtgacctg gtgtgtcccc
      661 accatctgtt tccgcagggg ccctgtctag gctctgcagt gctcctcttg gccaaagccc
      721 tgagggagag cacccagcag atgagaaatt tgattatcaa aaaggattgc gtttgattta
      781 ccattgtggt agatgagtcg tctctgacgg ttgccattcc cgttcgccaa atggacatcg
      841 accagcacac aagacaccat ggacctgtgt ttagagactt tagacaaaga aacccacgga
      901 acaagtggag agagccagga agcaggcact ggaacacatg tgagggctga tcctcggcct
      961 ttctcccact ccaagtttag tggggctcag agccttcctt gttcttttaa aaactacgcg
     1021 agttgttcgg aatccctctt gggttagctg ttattgtttt gactgcatcg aaatgctttt
     1081 catctgttac atccagtatt gtatttcatt ttgagacccc agattttacc cccacattac
     1141 aagctaagaa aggaggctat tactgtttat gttcagtcag acttttactt tggttgacag
     1201 tgaagctctg acacaggatt agccatgtta acatgtcagc gcccatcatg aacttactgt
     1261 aatcccctta ggtttggtgt ggcagcaggc cagatgtccc ctctccgctt ccaagaaggt
     1321 acaaacagcc tttcgatgcc tttcttgttc tgacagccat aggctttctg ttcagtttta
     1381 gtttgtcatt tcttgctcaa ctattccttt cagttgaagc aattcctcag ttctctggtg
     1441 gatgaaactc aacttctgtg ttccatatag agagaccaga tcttttgagt tctcctgcga
     1501 gcagtgtaga ggggtgtcca ttaggactgg gtgacgaggc ctttagagat tgtatgtatt
     1561 gcaaatagag atctgtttct aggagacttt agtggaagac tatacttttt acattttgag
     1621 tattttagat ttgagctttg aacatccctg acagatggtc acaagtttct ttcccttctg
     1681 tttcttgtga agaatgacta tcttggcgct ctcttggcat gatgctgttg gtagggatgg
     1741 tcctgactac tgtgttgcat ctctcaggaa aagctgaggt gctgggcagg actgctcagt
     1801 ctcctcttgc tagctagtgt gctgttctaa gagacatcta ggttacacgt aatatgaatg
     1861 ttctcatgca aaatatactt tatgctacag gcatgagagg ttttttttgt ttttggtttt
     1921 tttttctttt tagcatttag tacttctcca tagagatgat ttaaccagta atttctacac
     1981 ttctttttcc ttccatgatg catagaatac tggtagtgct ttggaatcct tgattagcac
     2041 actagatgct agttttctct gggaacactt cagtctggga gttaatgggc ccatgttccc
     2101 ttcaagtatg aataagaagt caatggaaga cagttcactg ctagacaaga agcacgagag
     2161 ccgattatag cagaagggat tctgggtcct atcacaagtg ttatctaaat aaaatatgag
     2221 atgctgaagg taagatggct tgcccttgaa gatcggcatg gtgacaactc tgtcatcttc
     2281 cttccctttg ggaaaagaga ggtcattcgc tgattgttga aatgaacctc tccagtgcac
     2341 actgcttatt ctttctctgt gcatatggag gaatgatgcc aggtgtaggg tgatcattcg
     2401 gggcaattag accttcctgt ctacctggaa gttagctctg gagatattct gccacttggc
     2461 aggatcgtca ggagccatcg ccagctccca tagaagggct gatgctgttc caagacacca
     2521 gtggggaaag ctcgctgcaa acacacttgc ttcctggttg cgctcagacc tgcggtcttc
     2581 cttggtgatt agtgctgcag agtcaagcca gaagaggact tgggcacagc atgatgtgat
     2641 ggcttctgcc aggtctcaga gcatccgggg agtgggcccc ttaggagtct ctcagctctg
     2701 ctcactggga gtgcagtcgg tcgctcactc tgcacctaac actgtgtagt cggacgtgcc
     2761 acttgagcag tgtcatgctt tgagccactt atagggggaa ggctccattt ttccactctg
     2821 tagttttctt aagatagctc tgtgttttgt ggtctcctgc taatatagta gtgttgcttt
     2881 ctaagctata acagtcaact ttattcttct actccaagaa tctcacccca tttgagtgta
     2941 cataatatat ataaaggagc cttaatggat ttgttttcat aatttaatat tttttgtatt
     3001 tgctcttgta taattgtttt ttttaatgga aagtattaca gaatcgaggg tggaattctt
     3061 agaaccaaag ttattcttaa taaaaatcac caatgcttgg agcacgca
//
