LOCUS       XM_039093463            3047 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus family with sequence similarity 107,
            member A (Fam107a), transcript variant X1, mRNA.
ACCESSION   XM_039093463
VERSION     XM_039093463.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051350.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039093463.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3047
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="15"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..3047
                     /gene="Fam107a"
                     /gene_synonym="Drr1; RGD1306327; Tu3a"
                     /note="family with sequence similarity 107, member A;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 31 ESTs, 12 Proteins, and 100% coverage of
                     the annotated genomic feature by RNAseq alignments,
                     including 72 samples with support for all annotated
                     introns"
                     /db_xref="GeneID:361018"
                     /db_xref="RGD:1306327"
     CDS             168..686
                     /gene="Fam107a"
                     /gene_synonym="Drr1; RGD1306327; Tu3a"
                     /codon_start=1
                     /product="actin-associated protein FAM107A isoform X1"
                     /protein_id="XP_038949391.1"
                     /db_xref="GeneID:361018"
                     /db_xref="RGD:1306327"
                     /translation="MAQKLSEWAKPPAKATGLYRAVLLRSASMYSEIQRERADIEGLM
                     ARPEYREWNSELIKPKKLLNPVKASRSHQELHRELLMNHKRGLGMDRKPELQRVLEHR
                     RRNQLIKKKEEELEAKRMQCPFEQELLRRQQRLNQLENPPQREEDHAPEFIKVRENLR
                     RITTLTSEERAL"
ORIGIN      
        1 acacggccgc acaccctacg cagatctggg aagcaggctg ggtctcacac agcccacagt
       61 aaccagatct ccggcgggtg gagcagccgg gcgcgtcact atcaccgagt gagacgctgc
      121 acaagccctc agtccaggct cggcggtggg aattcacagc gcagggcatg gcgcagaagc
      181 tcagcgagtg ggccaaaccg cccgctaagg ccaccgggct ctaccgagcg gtgctgctca
      241 ggtcagcctc catgtactca gagatccaga gggagcgggc tgacatcgag ggactcatgg
      301 ccaggccaga gtacagagag tggaattcag agctcatcaa acccaagaag ctgctaaacc
      361 ctgtgaaggc ctctcgaagc catcaggagc tgcaccgtga gctgcttatg aaccacaaaa
      421 ggggcctggg tatggaccgc aaaccagaat tgcagcgggt cctggagcac cgtcgcagga
      481 atcagctgat caaaaagaag gaggaggagc tggaggccaa gcggatgcag tgccccttcg
      541 agcaggagct gctgagaagg cagcagagac tgaaccagct ggaaaaccca ccacagagag
      601 aagaggacca tgcccctgag ttcatcaaag tccgggaaaa cctgcgcaga atcaccaccc
      661 tgaccagcga agagagagca ctgtagagtt tcctccactc agcagctcct gccacttgct
      721 ctggcccagc cctcctgaac ctgaggaccc tagcccacaa tgatgctagc aaggcacacc
      781 tgaaagctat ccctgggaaa ctgaaaaccc cccgcacccc acaggaaaag tctctggact
      841 tttctgagca cctagcattc ctgcaccaag aggaagccac taccaggaaa gacctccaga
      901 ggtgccattc ctgatctgac tcactgagac ttccccgcag aagaggaaga gagccaggtg
      961 tccctcgatt ttgcttcagt tgcccaataa ggcctacttc ttggaacaac tcagctccta
     1021 gcattggaaa cagctcaact ccggcttaac ctaaggccac ctgtttgaga aatcacagaa
     1081 tgagcaaaga aagcaccaga tgtttgtagc aaggaagggt gggaaggggc ccaagccacg
     1141 cccttttagg ccttgcccga ttgcctcata gtttggcttt tatttctcct ccccactgcc
     1201 ctccctaaac catacttcac ctcagagctc cggtttctag cctagaacag catgttgcca
     1261 agttactgta aatacaaatc agagagtcct gtgatcagtc cctggaagct acatgtataa
     1321 catactccat ggtccaggac atgggtttga acacatagct aggctgaagc agccaagagt
     1381 ggtttattag aaatatccaa ctttcttggc tccctgacca ggagtttccc agagcctcct
     1441 ctaaagccac ccaaactctt tactcactat ccatagtatt cccaacacac acacacacac
     1501 acacacacac acacacacac acacacacac agagagagag agagagagag agagagagag
     1561 agagagagag agagagagag agagaaaccc tagcctggtc aggggattgt aactgccaat
     1621 ttttatttct tactagtgta accacactat catacaattc tagccaaaaa taaccttagc
     1681 tttctacagt gttttggaaa gcaactatac aatgatttcc tctgcaaaga tatatatata
     1741 tatatattag ttcgaagacc ccactgccat ggtgatggag tagactctta ggtcaatatt
     1801 gccagcactg tcacctcaga ccctgcccct ccccctagtc tgggtcttcc ccacccattc
     1861 ttcttcctca aagtcccctt cctccacaac acccaaatac ttgaatcttt tgttcctatg
     1921 ccatttttta aaagatctac agagtaagcc aggcctgaat cctttcccct gaagaatgaa
     1981 atccatgact cagcttttaa gccctttgct ggtgggaaca acatggccag acaagcacaa
     2041 gttctcatgc cacagaccct cggatttccc tgctggggcg ccagtggatc tgcctccaag
     2101 aaatgatggt gggatggaca cagggtctga cagtgaatgg agatgtgtaa atagactctc
     2161 tgtgtttttc tcactctgaa ggtctaaatg agtggttctc aacctttcta atgctgtgga
     2221 ccctttaatg cagtttctca tgttgcggtg aaccccctcc caacagtaaa ttattttcat
     2281 tgctttttca taactgtatt cttactacta ttaaaatcat aatgtaaata tctgatatgc
     2341 aggatatcta atgtgtgacc cccccctccc atgaaagggt catgccccac aggttgagaa
     2401 acgatggttt aaatgcagtg aagctgtctt aagtatctgc tggtgaggta ttatgctgaa
     2461 gatgtgtatt tcctaaatag agggttgggg gttctcccct tacaggtcca ttgctgttct
     2521 gacatgtaaa gaggaacagg cggggcctct gggatagagt aggaccgccc aaaggacttg
     2581 gcagtcccag gagatatggc aaggtatgaa agagacaccc ccaaagtaca agaggcctca
     2641 aggcaggtct tccaggggaa ccatagtagc ggccttgata ctctgtgaat ctgttagtcc
     2701 caattccgtc tctctcactg cctttgtgac tataaatcta gattctcatt ctcctagcca
     2761 actctgtagg tttggctgag catgtgacca ggcatggcca atgaaattga agtggaagtc
     2821 tacaggagct actagaagaa ctcatgcctt tcctgaaacc ctcacttggc ctctcccttc
     2881 ttgattgagg atgtcatgcc tggaccatta gcaaccatgt tttacctgag ggaaggccaa
     2941 aagatccaca aaccctgtga tctgatcgtc tgaccaagca agtgccaaca gctttcccgt
     3001 ctccaaactc catgtaaata aaaataaatc cctgtttggt aaagcca
//
