LOCUS       NM_001408891            3063 bp    mRNA    linear   ROD 01-APR-2024
DEFINITION  Rattus norvegicus VCP nuclear cofactor family member 2 (Vcf2),
            transcript variant 2, mRNA.
ACCESSION   NM_001408891
VERSION     NM_001408891.1
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     INFERRED REFSEQ: This record is predicted by genome sequence
            analysis and is not yet supported by experimental evidence. The
            reference sequence was derived from JAXUCZ010000021.1.
            
            ##Evidence-Data-START##
            RNAseq introns :: mixed sample support SAMEA5760393, SAMEA5760433
                              [ECO:0006172]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on expression, longest protein
            ##RefSeq-Attributes-END##
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-182               JAXUCZ010000021.1  22820499-22820680   c
            183-282             JAXUCZ010000021.1  22789310-22789409   c
            283-3063            JAXUCZ010000021.1  22765764-22768544   c
FEATURES             Location/Qualifiers
     source          1..3063
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /map="Xq12"
     gene            1..3063
                     /gene="Vcf2"
                     /gene_synonym="Fam104b; Fam156a; Fam156b; Tmem29"
                     /note="VCP nuclear cofactor family member 2"
                     /db_xref="GeneID:100359832"
                     /db_xref="RGD:2323310"
     exon            1..182
                     /gene="Vcf2"
                     /gene_synonym="Fam104b; Fam156a; Fam156b; Tmem29"
                     /inference="alignment:Splign:2.1.0"
     exon            183..282
                     /gene="Vcf2"
                     /gene_synonym="Fam104b; Fam156a; Fam156b; Tmem29"
                     /inference="alignment:Splign:2.1.0"
     exon            283..3063
                     /gene="Vcf2"
                     /gene_synonym="Fam104b; Fam156a; Fam156b; Tmem29"
                     /inference="alignment:Splign:2.1.0"
     CDS             405..1019
                     /gene="Vcf2"
                     /gene_synonym="Fam104b; Fam156a; Fam156b; Tmem29"
                     /note="isoform 2 is encoded by transcript variant 2;
                     rCG38975-like; transmembrane protein 29; family with
                     sequence similarity 156, member B; family with sequence
                     similarity 156, member A; family with sequence similarity
                     104 member B"
                     /codon_start=1
                     /product="transmembrane protein 29 isoform 2"
                     /protein_id="NP_001395820.1"
                     /db_xref="GeneID:100359832"
                     /db_xref="RGD:2323310"
                     /translation="MDPLQKWDPMSIAVPSRIATVKSSQDAPATPQPSSSEKLSMGLS
                     VLSSSPSPSSGVPATLSEGLFQQQAREKAALWQQYWEKQGFPQRKKVFLRHSRRWHRD
                     HLAPYLLERDVRAFPSGDRAQNQLRCQGHVQNIAEMSGERNTAPNPPSWEMLVQGLNG
                     LTLSLGANRPGPLPEGPRQQQQPEDICQLERQQESLKMFQRMLK"
ORIGIN      
        1 ggctgatttt cgctagggcg aggatgggcg tacgggcttt catcgcggat ccagttggtt
       61 gtgctctctt aggcaagtac gagtgacttc ggcggttttc tccattccgc ttaccttccg
      121 gagtcttcat ttctacaacc gttgactgaa aagcagccga aatttttttt tgttctgtga
      181 gggaaacgac gaccagatga caatgcggac gacaaccatc atccccctca ttccaagagg
      241 acaaggaagg accagaccga acaggatcct tgtgctatag agtctggctt ttcctggctg
      301 cacacatccc tactcgccct cgcctagtta ttccacaagc ctccactttc acttttcctg
      361 tgggaccagg gctcagtgtg gcctccatct cagactagac ccccatggat ccactgcaga
      421 aatgggatcc aatgtcaatt gctgtgccct cccgcatagc cactgtgaag agctcacaag
      481 atgctccggc aacccctcag ccttcctctt cagaaaagct aagcatgggc ctcagtgtcc
      541 tgagcagcag ccccagcccc agctcaggtg tccctgctac tctgtcagag gggctgttcc
      601 agcagcaggc ccgggagaag gcggctctgt ggcagcagta ctgggagaag cagggctttc
      661 ctcagaggaa gaaagtcttc ctgaggcact cgagacgctg gcaccgggat cacctggcac
      721 cttacctgct tgaaagggat gtcagagcct ttccctcagg tgatcgagct cagaatcagc
      781 ttcgatgcca gggccacgtg cagaatattg ctgagatgag tggggagagg aacacagccc
      841 ccaaccctcc ctcgtgggaa atgctggtgc agggcctcaa tggcctcacc cttagcctgg
      901 gagccaacag acccggcccc ctgccagagg ggcctcggca gcaacagcag ccagaggaca
      961 tttgccagct ggagagacag caggaaagcc tgaagatgtt ccagaggatg ctcaagtaga
     1021 ggatgcaaga aggctgaggt gctggctccc aagaataaat gtgaaaatgc atttagaagg
     1081 tgctgcatcg ctatctcggg ggtgtggact cctctgaggt caaggcagtc cactgccact
     1141 ggataagtcc caacacttgt gctatgatgg gaattgtcct tggaacgatc tcaactatcc
     1201 tgcctgtctt ttcgcatgcc tttttggatg tggtgctgcg tgttagccta tacagaagaa
     1261 aactgggtac cagtgatccc caaatgcatt tgatgtgatt catacacaga ggttttgctg
     1321 tttttttttt ccttagagct caacaccttt tccacattct tgttgaaaag agctaatacc
     1381 acatgtatat ctgtatatag tgtgaagaca tggcttcttg atgtcagttt attgagtgtc
     1441 cccacaagaa ggattactac ataccttgtg atgcatgtgg tgggtaggag agagggagag
     1501 agattcaatt gcagcttcca gaaactgaag ccagggaatt cagtcttaag gcagcaaccc
     1561 aatgtactga agtgggtaaa gcatccagcg gtgtgaacct tcatggaaga agagatcttg
     1621 tcttccttag gcataccaaa tggtggctca gtgcaggagt ttcccacgtg tttactcaat
     1681 catttgtgaa gcagaagttg acttggaact gcagaactat atcatcttcc ctcctagtcc
     1741 taccctctgg ctcttcatct cattaataag acaatttaaa gacactcggg caggtcagga
     1801 aagccgtagt ttcctttaga tgagaaggca aagagattag aagctccagt atgcctgcta
     1861 ggggcagcat ggacagtctg gggtgtggat aaggactgta ctgaaggaag gcttggagta
     1921 catcattatg gcctcagaaa ttggttagat gtgaatgttt gcagggattt actttacaat
     1981 cccatctttt cccatagtgg cactatatat aaccaaggcc tgggtatgcg catattatta
     2041 actggaagct ggggagggct gtgcagctgt ccttcaagtg ttcctttagt ggccaatgac
     2101 cacaagtggc aaatgctcta tccaattcta ttagtgggag tgtttgttat ctgtgtgtgc
     2161 tgttggattt tagttttggt aaagactctg aacatcggac agatcagtag ggagtgcaga
     2221 aattagcccc taggtagatt accaaaggga cagcaattta cctgcctgtg tgccacatgg
     2281 tgttatggta gcagtgtggg cttggtcaac tttggacttg gccattgctc cagtttgttg
     2341 catagcaacc attctgcagt gggaacatga aatccatgtg tgcttaaagg gaacgtgctc
     2401 ttaaccttca ggttcatttt atcttattac ttctgagtgg acagaattac aatcctgggc
     2461 agctattcac catagcttgg gagcactacc catttatagc ttctgattga cagagggagc
     2521 tggtcgaggc cttgaaacac atccctgcca attattcgat gccttgatca ctgtgtaggt
     2581 aaaggctgcc tggcaagata acccttctcc ctggccattt ggccatgaga agcagagcct
     2641 cttgtgtact aggtaacaag ggaacacctt catcctcaca tgccctttga tctgcaggct
     2701 atgtacaggg catcccttac ccctctctga cccaaggggt gtgtcagggt gtacatgtgt
     2761 attttaactt ttctgacatg gaattgattt gctttgtttc aaggatgagc taccctctgc
     2821 ttgtaccaga tggcgtgaaa tcccctgttc caactgtgat agcaggttct cttctgtgag
     2881 tgcctgcctc ctgttgttta tgttaagtag aatgtcatag tgtggtcttg tcagagactg
     2941 tgaggtaaag aaactgagca gtgatctccc ctccactact ggagacaact ggtttgcatt
     3001 acacagtgtg agttttgtaa cacattgtct gactgtgaag ggttaaattt ccattgcact
     3061 taa
//
