LOCUS       NM_001034958            2552 bp    mRNA    linear   ROD 30-MAR-2024
DEFINITION  Rattus norvegicus VCP nuclear cofactor family member 1 (Vcf1),
            mRNA.
ACCESSION   NM_001034958
VERSION     NM_001034958.2
KEYWORDS    RefSeq; RefSeq Select.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
REFERENCE   1  (bases 1 to 2552)
  AUTHORS   Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G.,
            Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D.,
            Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K.,
            Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F.,
            Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L.,
            Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L.,
            Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S.,
            Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J.,
            Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J.,
            McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S.,
            Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W.,
            Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A.,
            Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S.,
            Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y.,
            Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D.,
            Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M.,
            Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E.,
            Schnerch,A., Schein,J.E., Jones,S.J. and Marra,M.A.
  CONSRTM   Mammalian Gene Collection Program Team
  TITLE     Generation and initial analysis of more than 15,000 full-length
            human and mouse cDNA sequences
  JOURNAL   Proc Natl Acad Sci U S A 99 (26), 16899-16903 (2002)
   PUBMED   12477932
COMMENT     VALIDATED REFSEQ: This record has undergone validation or
            preliminary review. The reference sequence was derived from
            JAXUCZ010000010.1.
            
            On Oct 2, 2008 this sequence version replaced NM_001034958.1.
            
            Sequence Note: The RefSeq transcript and protein were derived from
            genomic sequence to make the sequence consistent with the reference
            genome assembly. The genomic coordinates used for the transcript
            record were based on alignments.
            
            ##Evidence-Data-START##
            Transcript exon combination :: BC105876.1, FQ120376.1 [ECO:0000332]
            RNAseq introns              :: single sample supports all introns
                                           SAMEA5760389, SAMEA5760434
                                           [ECO:0000348]
            ##Evidence-Data-END##
            
            ##RefSeq-Attributes-START##
            RefSeq Select criteria :: based on conservation, expression
            ##RefSeq-Attributes-END##
            COMPLETENESS: complete on the 3' end.
PRIMARY     REFSEQ_SPAN         PRIMARY_IDENTIFIER PRIMARY_SPAN        COMP
            1-221               JAXUCZ010000010.1  99227251-99227471   c
            222-321             JAXUCZ010000010.1  99220570-99220669   c
            322-2552            JAXUCZ010000010.1  99206549-99208779   c
FEATURES             Location/Qualifiers
     source          1..2552
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /map="10q32.1"
     gene            1..2552
                     /gene="Vcf1"
                     /gene_synonym="Fam104a"
                     /note="VCP nuclear cofactor family member 1"
                     /db_xref="GeneID:619573"
                     /db_xref="RGD:1563409"
     CDS             1..552
                     /gene="Vcf1"
                     /gene_synonym="Fam104a"
                     /note="family with sequence similarity 104, member A"
                     /codon_start=1
                     /product="protein VCF1"
                     /protein_id="NP_001030130.2"
                     /db_xref="GeneID:619573"
                     /db_xref="RGD:1563409"
                     /translation="MGRRGGDTGSSCGTGGTEGYSPPAASTRAAVRAQARGGGRGGRR
                     NTTPTVRCRRGAAPRRSPSPAAMSERLRPRKRRRNGSDDDNHPPPQTKRSSRNPIFQD
                     SWDTESSSSDSGGSSSSSINSPDRASGPESSLSHIIPGSCPSTPQPMPEQSALCQGPY
                     FHINQTLKEAHFHSLQHRGRPPT"
     exon            1..221
                     /gene="Vcf1"
                     /gene_synonym="Fam104a"
                     /inference="alignment:Splign:2.1.0"
     exon            222..321
                     /gene="Vcf1"
                     /gene_synonym="Fam104a"
                     /inference="alignment:Splign:2.1.0"
     exon            322..2552
                     /gene="Vcf1"
                     /gene_synonym="Fam104a"
                     /inference="alignment:Splign:2.1.0"
ORIGIN      
        1 atggggaggc gcggaggaga caccggaagt agctgtggta cgggtgggac tgaggggtac
       61 tcaccgccgg cagcctccac ccgcgcggca gtcagagctc aggcccgtgg gggtgggcgt
      121 ggcggtcgcc ggaacacaac tccgactgtt cgctgtcggc gcggggcggc gccgcgtcgc
      181 tcgccttcac cagctgccat gagcgagcgc ctccgcccca gaaaaaggag aagaaatggc
      241 agtgatgatg acaaccaccc tcctccacag accaaaagga gcagtaggaa ccccatcttc
      301 caggactcct gggacacaga gtcttcaagc agtgacagcg gtgggagcag cagcagcagc
      361 atcaacagcc cagacagggc cagtgggcca gagagcagcc tgagccacat catccctgga
      421 tcctgcccca gtacccccca gccgatgccc gagcagtctg cactgtgcca aggcccttac
      481 ttccacatca atcagaccct gaaggaggct cactttcaca gcctacagca ccgaggccgg
      541 cctccgacat gatgctccgg cagtttcttg ccttctgtga agggacagca ctgtgcagat
      601 tggatatttc aacttaatga tttgttttta aaagttgcac acacacacaa aaaactgcct
      661 gttggctttc agtctatatt tgagtaccgg gtcagcaggc gctgtttact tgggttttgc
      721 tgcactattg cgatttcaga ggggcttggg agcaattttt tataggattc ttttgagaga
      781 gggcatcaga tccacgtcat ggcagtgtat gaggaagtct catctgactg atttccacat
      841 ctgtcactta gatgctatac tgtatgtaaa agagcctctt aaaaaatgtg ggatcttaac
      901 ttttttaatt caataaacta gtaaagaata tctagtttcc atgaaaaaaa aatgtaagtt
      961 tctccctaaa tgtaggaagc ttggctcagt gttgcactga agttaactgc catactacct
     1021 cttagtatgt agatgtctgt ggaaatgctc tcccttgaaa cagaagagtt gcccactctg
     1081 aagaccatgg aagttaagcc cctttcctag ttgtggtctt tgttttatat ttgaatttcc
     1141 ggggagaata tcacttccat atctattttt ttctggtctg tagcctagac gctatagaga
     1201 acattgtgca gttctcaaag tcaagaaata cctagtaact gtcttacgaa cttgtgtatt
     1261 aacagcttaa ctgctagctc cttgcagtgc ccatgaccaa ggcagcggtc agtgcagatc
     1321 aagtgcaagc tgcccgacag ctggagggag agaggtttaa ctcatgcctg cgggtacccg
     1381 gccctgctag gggtcgccgc attcttatca ttggagctgg agagattggt gtggtgtaga
     1441 aacctgagca aaggcaccgc taggacaaac agtgcggtag ggtttattta gagcctgggc
     1501 gttgttccat gctacttggt catactagag agccaggcga gcttgaacaa tgaaggtgca
     1561 ggtgagccgt cttcctcact tgcaagctgt ctgaatagag agccaggatg cgccgttggg
     1621 tcacctactc tggagagtgc cggggggcca acctgccgtt agaagaagag gaagtgcctt
     1681 aagcgtccac ccatagcctc ctgcctgtcc ccttcactgc accccactca gaggccacac
     1741 agcacaggca acagcgctga ggagtgggga tggctctaga gaggaggatc tgacagggac
     1801 acactggacc agagcaggtt actatgtgac acagttgcag tgtgaaggag gcccatgcca
     1861 ggaggggagt gaacatgcag tgccttccat ggcctgctcc tctgagggcc acagcatgga
     1921 agggctggcc ccgtgacatg ggaactactg tcatgaagcc cagagttcag aaagtagttt
     1981 ttttttttct ttcaggactg ttttccagat tttaaaaaca gatgtttgct gaggactcag
     2041 gatcttactg ggtttgttgg caaggaatgt gggaaaggat actttactgg aattctaaca
     2101 gtaaggcaaa cagtgctatg agaagcgaag ctgtcgctgt caagcacaca tgtacacaac
     2161 acaacccaga aatacccagg agggctccgg caggcctaat ggatggcgtc ctactgaaac
     2221 aaaacatgta ttaataaaac agtgtgtgag gaagcatgtt tcttcccatc tcccacccaa
     2281 gtaaaggcac aggtgagacc gtctgaagac aaagggtctt cccacgttct gaacacagtg
     2341 ttggggcaca gtcattcttt caccccacaa aatgcaagaa gccatctcta tcgtgtgctg
     2401 tgcggttttc acagcctggg gtctggctct gggtagattt ctattttgag gtgtttgcac
     2461 gagtcaatgg gtatctttct atgagctcaa gctagtgaac cctgtcttct ctactgcgcc
     2521 gccattaaaa gcagccttag tgcattgctg ta
//
