LOCUS       XM_039087819            5294 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus FA core complex associated protein 100
            (Faap100), transcript variant X1, mRNA.
ACCESSION   XM_039087819
VERSION     XM_039087819.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051345.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039087819.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5294
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="10"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5294
                     /gene="Faap100"
                     /note="FA core complex associated protein 100; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 9 ESTs, 2 Proteins, and 100% coverage of the annotated
                     genomic feature by RNAseq alignments, including 28 samples
                     with support for all annotated introns"
                     /db_xref="GeneID:303742"
                     /db_xref="RGD:1306926"
     CDS             763..3504
                     /gene="Faap100"
                     /codon_start=1
                     /product="Fanconi anemia core complex-associated protein
                     100 isoform X1"
                     /protein_id="XP_038943747.1"
                     /db_xref="GeneID:303742"
                     /db_xref="RGD:1306926"
                     /translation="MWAVPSQVLSQNDARASAAYNLAPEQPLLNRMAGASSRVHYLSD
                     FCCPLGGRAAGKPHVLRHDAEVFLSTGREFVYVYDQEGGLLTAVYQFPDQVWHLQLLA
                     TRRALYVLCARTGIYCLSLDSLDRSGSQACEDKEDETHPYPVIHVDPDACVLPDAALC
                     AFTVLDDVLVTLAQGPTQWKMQLFECPHAGEEPRPGGQVGEVQLSTCTPPGGVPGEPT
                     APCFLPVLCCVFPPDSRAPHGHPQGCGCFMLEEALFGLLFGVDASLLQSPVVLCGLPD
                     GQLCCVALKALVTSELAPGDPKVLVKILHHLEEPVIFIGALRAEPQEEEEEEAVRELL
                     PVENVHSDCLVALGHQGRTLAIRASWSESGNLVPELREYYLPGPVLCAACGRDGHMYH
                     STPSDLCVVDLTRRDSTWNPEKPDGAIGSLPSTLCPASLNICSALALCVTARAPTGGT
                     ELLVLSSKGRLITCSLDLNPEAPVPTKMAVANAGQKIKELLLDIGDVSERVSFLKKAV
                     DQRNKAITSLNEAMNVSCALLSSQEGDRPISCTITTSWSRLELRDMLMATCTLDNSSS
                     FSLDQGWTLCIQVLTSSSALDLDGTGSAFTYTIPVDRLGPGSRREVTLPLGPSESGVL
                     DLPVTMSCWLFYSLREVIGEALAPSDPLEVPYLEKLPLNLPKQEGVCLPLCKRTVDML
                     QCLRFPGVASHPAQAPSVPGPACDPVETFLKTCQGPGSEPTGAASLRAKYLPPSTASI
                     RVSAGLLRAALEDGHSGFHLCSATLCWLLAENAAVDVLRAQALSSIQGIAPDGTDVNL
                     IVHEVAVTDLSPAGPIQAVEIQVESSSLANMCRAHHAIIRRIKTMVTEQAAQGSSPPD
                     LRMQYLQQIHANHQELLREVQTLRDQLCTEDEVSSCSTAQKLLQIYKQLRNPSLVLL"
ORIGIN      
        1 ccttcagagc tggggaccca acccagggcc ttgtgcttgc taggcaagcg ctctaccact
       61 gagctaaatc cccaaccccc cacacaactt ttattactgt tttttatcgt gtgtttttgt
      121 gtacagaaat agctcggtag aggatgtgtt agccctggag ctattagggt tgtgaccttc
      181 cctatgtgga tgctgggaat caaacttggg tcttctgcaa gaatagtatg tgcttgtaag
      241 tgctgagcca tctttccagc cccagggtgc tgtttgacaa ctacactagg atcatactat
      301 gttccaaaac gcactggact tttgtgcctg gttgtacctc agaccttgta gatttgtcca
      361 ctggaatttt cagatgagaa ttttttaaga gtcaaggttg cctgggctgg ccccaaactc
      421 tagtattcct gcctcagcct cctgagtagc tgccactcta gaagcatagg cagtggcatc
      481 tagtttgatg agtgctctgg aagagtggcg aatacttcat gaatcttgta cttggagcct
      541 cattccaggt gggagtctca gtctgctctc tcaaagagct gcaagtagag ctgtcactga
      601 agaacatgta gtttccctta gacccagctc atcagggttc tccgcatcct ctgctctagt
      661 tcagaatcac attctactgt gttcgtggag gagaggctct tctggccggc tggtctgaag
      721 cacctttctc cctgatcaag tgaacggttt gctgaacatg ctatgtgggc ggtaccctcc
      781 caagtgctgt cacaaaacga tgcgagggca agtgctgcat acaaccttgc accagagcaa
      841 cctctgctca acaggatggc gggcgcttcc tcgcgcgtgc actatctgtc ggacttctgc
      901 tgcccgctcg gaggccgagc ggcggggaag ccccatgtgc tgcgacatga tgcggaggtc
      961 tttctgtcca ccgggcgcga gttcgtctat gtgtatgacc aggagggcgg gctgctgacg
     1021 gcggtgtacc agtttcccga ccaggtgtgg cacctgcagc tcctggccac ccgcagggca
     1081 ctctacgtcc tgtgtgcccg gactggcatc tactgcctgt cgttggactc actggacagg
     1141 tctgggagcc aggcctgtga ggacaaagag gatgagactc acccttaccc tgtgatccat
     1201 gtggacccag atgcctgtgt tctccctgac gctgccctct gtgccttcac tgtgctggac
     1261 gatgttctgg tcaccctggc acagggcccc acccagtgga agatgcaact ctttgagtgt
     1321 ccccatgcag gggaggagcc tcggcctgga ggccaggtcg gtgaggtgca gctatccacc
     1381 tgcacccctc caggtggggt gccgggggag cctacagccc cctgcttcct gccagtactg
     1441 tgctgtgtgt tcccaccaga ctccagggca cctcatggtc acccccaggg ctgtgggtgc
     1501 ttcatgctgg aggaggctct ctttggtcta ctctttggag ttgatgccag tctcctgcag
     1561 tcccctgtgg tcctctgcgg tctccctgat ggccagcttt gttgtgtggc cctgaaggct
     1621 ctggttactt ctgagttagc ccctggtgac ccaaaggtcc tggtcaagat cctccaccac
     1681 ctagaggagc ctgtgatctt cattggggct ttgagggcag agccacagga ggaggaggag
     1741 gaggaagcag taagagagct gctgcctgtc gagaatgtgc actctgactg cctagtagcc
     1801 cttggtcacc agggccggac actggccatc agggccagct ggagtgagtc agggaatctg
     1861 gttccagagc ttcgtgagta ttacctcccg gggcctgtgc tctgtgccgc ctgtggcagg
     1921 gatggccaca tgtaccacag caccccctca gacctctgtg tggtagacct gactcggaga
     1981 gacagtactt ggaaccctga gaagccagat ggggccatag gaagcctgcc ctccacgctg
     2041 tgcccagcca gcttgaacat ctgcagcgcc cttgctctgt gtgtgacagc aagggcacct
     2101 acaggtggca ccgagctcct ggtcctgtct tctaaaggac gcctgatcac ctgcagtctg
     2161 gacttgaacc ctgaggcacc tgtgcctacc aagatggctg tggcaaatgc aggccagaaa
     2221 attaaggagc tgctcctgga cattggcgat gtctctgaga gggtgtcctt tctgaagaaa
     2281 gctgttgacc agcgcaacaa ggccataaca agtctcaatg aggccatgaa tgtgagctgt
     2341 gccctgctgt ccagccagga gggcgaccgg cccatctcat gtaccatcac cacctcctgg
     2401 agccgcctgg agctgcgaga catgctgatg gccacctgca cactggacaa tagcagcagc
     2461 ttcagcctgg accagggctg gaccttgtgc attcaggtgc tgactagttc ctctgcctta
     2521 gacctggatg ggactggttc agctttcacc tacaccattc cagtggacag actgggccca
     2581 ggcagccggc gggaagtgac gttgcccctg ggccctagtg agagtggtgt gctcgacctg
     2641 cctgtgacca tgtcctgctg gctcttctat agcctcaggg aggtgatagg tgaggccctt
     2701 gccccctcag accctctaga ggtcccctac ctggagaagc tccctctcaa ccttcctaag
     2761 caagagggtg tctgcctgcc cctgtgcaag cgcacagtgg acatgcttca gtgcctgcgc
     2821 tttcctggcg tggcctcaca ccctgcccag gcccccagtg tgcctggccc tgcctgcgat
     2881 cctgtggaaa ctttcctgaa gacctgccaa ggccctggca gcgagcccac tggtgccgcc
     2941 tcgctacggg ccaagtacct gcctccatcc acagcctcca tcagggtgtc tgcaggcctc
     3001 ctcagagctg ccctagaaga cggtcactca ggcttccacc tgtgcagtgc taccctgtgc
     3061 tggctccttg ccgagaatgc tgctgtggat gtcctgaggg cccaggcact gtcttctatc
     3121 cagggaatag ccccagatgg gacggatgtc aacctcatcg tgcatgaggt agctgtgact
     3181 gatttgagcc ctgcagggcc catccaggct gtagagatcc aagtagagag ctcctctctg
     3241 gccaacatgt gcagggcgca ccatgccatc atcagacgaa taaagacgat ggtcacagag
     3301 caagcagccc aaggctccag cccacctgac ctccgtatgc agtatttaca gcagatccat
     3361 gccaaccacc aggaactgct ccgtgaagtg caaaccctgc gtgatcagct gtgcactgaa
     3421 gacgaagtga gttcctgctc cacagcccag aaactcctgc agatttacaa gcagctgcgt
     3481 aaccctagcc ttgtcctgtt gtgaccagct gctggccagc tccacgtcac tgtgggacac
     3541 actgggggct tgcctggcag tacccctcaa ctgtaacctc tgcacccctg atgagaattg
     3601 tcgtcaccca agtactcagg ccatggagac acagggtttc tggaatccag acttccaagt
     3661 ttgggacggt tctgctgctg accccagcac accccaggag cgcttgctgc ctctctgggg
     3721 ccaccagggg gcagagtgct cacttcactg caaccaaagc acaaagacct tgggagggct
     3781 cccattgatg ccagtgggaa ggctgcctcc agcactgtgc tgctcttcag ccccacatcc
     3841 cagcctcctc cttcagccgg gccctgccct gccctgctgc tggtgctgtc gttaccgtgg
     3901 gaggggagcg tgtctgcaga gctctgcctg ctcctgttgt ctgtctgtga ggtgctgtgc
     3961 tgacaagctg cctttctgtg aagttccagg tgtccactga ggttgactca cttctgccct
     4021 ccaccttctc tgttgagcga gctctgtgca gttgggtgga taacccttcc caggttccct
     4081 ttgcccactg acggaaggac agtcctcagt gcccaggcac cctccaccaa ggcttctgtg
     4141 gctatttggg gccaaaggtc tgccctctga ggtctggcca gacggaggcc actggctctt
     4201 gccaccctca cctcacaggg catttacatg ggagtctgtc catcctacag gacaaagttc
     4261 tccataaagg aagttaggaa gtggaatagg cccactgtag acaccacctt gagtcgatat
     4321 aaggtcggct tttgtaacaa ggtgcttgtt cccagggttg ccagttcact tggccctgat
     4381 ggcctgctaa gagcctggcc acagcttgtc cccaaggcta ctcttcagtg ggaaccccgg
     4441 ctcctttgtg tactgccctc tcaacaagtt agggtgggtc aagccacagg gtataaagcc
     4501 ttggaaaaag gaggtgtctg ctaggctgta ctggcttcag tctctgtcag agttgacatt
     4561 ttctagtgtc ccctacttgc tgttataccc tacagagatt gagaggctcc tccctagcct
     4621 gaacttgagc aggtctcagg atcggaagtg tgtgacctca gggactggtc ctgatgatgt
     4681 cccacctcct cagcctcact aggcacctgg acacacgccc acatctgcac ctggacacac
     4741 acacgcccac atctggtctt tggctgttgt cctcagcact ggctggatca gtagagtcca
     4801 caccactctt aggcggctgc cagagtagaa gaaatactgg tcagctggag agtcacacct
     4861 gaagtgtcat ggtggattaa gagtcaccct taggggctgg ggatttagct cagtggtaga
     4921 gcgcttacct aggaagcgca aggccctggg ttcggtcccc agctccgaaa aaaaagaacc
     4981 aaaaaaaaaa gagtcaccct taatccagct gggaccccag tcttgttcaa cacctgtgtg
     5041 atgtcccggg acacaccagg tatgcctgac atcaggaaca ctgcaggcca tggaccactg
     5101 gggctcgcag acaagattct gagacttggc gcactcaggg tggctgctaa ggtcaactcc
     5161 aagagtcagt aggctattcc ctgacatgtg tccctggtcc cttggtaagc cacgggcagt
     5221 cctaacggtg agggtgcgtg tctggccatc acttccttcc catcatgttt tcctgtcttc
     5281 cctccttgct ccga
//
