LOCUS       XM_017602279            7130 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus family with sequence similarity 120C
            (FAM120C), transcript variant X1, mRNA.
ACCESSION   XM_017602279
VERSION     XM_017602279.2
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051356.1) annotated using gene prediction method: Gnomon,
            supported by mRNA and EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 2, 2024 this sequence was replaced by
            NM_001427708.1.
            
            On Jan 21, 2021 this sequence version replaced XM_017602279.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7130
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="X"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..7130
                     /gene="FAM120C"
                     /note="family with sequence similarity 120C; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 1 mRNA, 26 ESTs, 4 Proteins, and 100% coverage of the
                     annotated genomic feature by RNAseq alignments, including
                     70 samples with support for all annotated introns"
                     /db_xref="GeneID:317423"
                     /db_xref="RGD:1564253"
     CDS             94..3783
                     /gene="FAM120C"
                     /codon_start=1
                     /product="constitutive coactivator of PPAR-gamma-like
                     protein 2 isoform X1"
                     /protein_id="XP_017457768.2"
                     /db_xref="GeneID:317423"
                     /db_xref="RGD:1564253"
                     /translation="MLIRPAPAPLPQLESEYHREDEATWLPEVEGRGFTPFEEVKKSS
                     GGEREKRSDYDLSSLLSSQPLLSLVSLTSALHPHPVCGLLPSPPTFPRPSRSRTLSPP
                     PSPLPPAECARARLQLRAGIAAWLACAAAVSSAHGGSMGVQGFQEFLEKRCPGAVVPV
                     DLLKLARTVSRQQQQQHLHRQLPPAALAPGAPRIARGSAPLPPPLPPAAFGAYSGGAG
                     PTRHHHPAHHFHHHGQAPPGLHPPPPPPLPGARVLVDAGSALPRLYGGYQTDWVCGGQ
                     WNAMLGYLSALCQACAYPGGDGLELVVMFPGGLGKDRLAEWGRRCQAERQTAQLIVGH
                     VGNKGTPPPRAWFLPPACLSHCVRLALIRFRVKVFQSLEDHHLEVVAFFRENGFHGLL
                     AHDSEYALYNIPSYYSSHALKLSWNGKNLTTNQFLMQEVAKQLGLKRMNFPIFAALLG
                     NHILPDEDLAAFHWSLLGPEHPLASLKVRAHQLVLPPCDVVIKAVSEYVSSIKDPSNL
                     DVVGKDVFKQSQSRTEDKIERFKKAVEYYSVTTKLSSLPVGPSFLGFRNNRLGNPPLP
                     RNQMGPISPGKPMFSRQMPQKMKYPPPFPMGPNSSLLFSHSVGESHAFSEDAMLQDSS
                     FANWAVSYDSNTSQFPNCLTSKTSPPLGPDSSHSSSSDGDEANGAGSEQVTEAVQQQP
                     GWEDPSGDRGAWVQPVDAGASETNATESEPHIPSLLSMSTRNHMDITIPPLPPVAPEV
                     LRVAEHRHRRGLMYPYIYHVLTKGEIKIPVCIEDECNMELPPAALLFRSARQYVYGVL
                     FSLAETQRKMERLAIRRRLPIEVPSVILKEWSAYKGKSPQTPELVSALTFREWTCPNL
                     KKLWLGKAVEDKNRRMRAFLACMKSDTPSMLNPANVPTHLLLMCCVLRYMVQWPGGRI
                     LHRHELDTFLAQAVSTQLYEPDQLQELKIEKLDARGIQLAALFMSGVDTALFANDACG
                     QPVPWEHCCPWIYFDGKLFQSKLIKAGRERVSLVELCDGQADLASKVEKMRQSILEGV
                     NMNHPPPSALLPSPTFVPPMVPSLYPVSLYSRAMGSFPPPPQARSRGFAGLHPIPPQG
                     GKLEIAGMVVGQWAGSRSSRSRGSFGMQVVSVGGPGKGHGKEQAGRGSKGHKKGNKQG
                     SSDGISKSVELHPSRARSQVNGNNGTLIVEEKSDPLPAPPQCALSRDSTVCNSSDDHC
                     LPVKNGEKNHVQEQELEAVAQQKEE"
ORIGIN      
        1 tgacacttac gaacatcaag gcctgacagg agtgatcctc tggttcgaag actagatcct
       61 gaggctatcc aggaaaagac tacaactccc aggatgctca tccgccccgc ccctgcaccc
      121 ctcccccagc tagaaagcga gtatcacaga gaagacgagg caacatggct cccggaggtg
      181 gaaggcagag gcttcacccc ctttgaagag gtgaagaaga gcagcggagg ggaacgggaa
      241 aagagaagtg actacgattt gtcatcgctt ttatcttccc agcctcttct gagtctggtc
      301 agcctcacct ctgctctcca tccgcaccca gtctgtggtc tcctcccctc cccgcccacg
      361 ttccctcgcc cctcccgctc tcgaaccctc tccccgcccc cctcgcccct accccccgcg
      421 gagtgcgcac gcgcccgcct ccagcttcgc gcggggatcg ccgcctggct cgcttgcgca
      481 gccgctgttt cttctgccca cggaggaagc atgggcgtcc agggcttcca agagttcctg
      541 gagaagcgct gtcccggggc tgtggtgcct gtggacctcc tcaaactcgc gcgcaccgtc
      601 tcgcgccagc agcagcagca gcacctgcac cgccagctgc cgccagcagc cctagcgcca
      661 ggggctccac gcatcgccag gggctctgct cctctgccgc cgccgctccc gcctgctgcc
      721 tttggtgctt actccggggg cgcggggccg actcggcacc atcaccctgc tcaccatttc
      781 caccaccatg gccaagcgcc gccagggctg catccgccgc cgccccctcc gctgcctggg
      841 gctcgggtat tggtagacgc gggctccgcg ctgccgcggc tctatggtgg ctaccagacg
      901 gattgggttt gtggcggcca gtggaatgcc atgctgggct acttgtcagc gctgtgccag
      961 gcttgtgcct atccgggcgg agacggcctg gagctggtgg tcatgttccc tgggggcctg
     1021 gggaaggacc gactggcgga gtggggccgt cggtgccagg cggagcggca gactgcgcaa
     1081 ctgatcgtgg gacacgtggg caacaagggc acccctccac cgcgggcctg gttcctgcca
     1141 cctgcctgtc tgagccactg cgtgaggcta gcactcatcc gcttccgggt caaggtcttt
     1201 cagagccttg aagaccacca tttggaagta gtggcttttt tcagggagaa tggctttcat
     1261 ggccttcttg ctcacgactc tgagtatgcg ctctacaata tcccatctta ctacagttcc
     1321 catgcgctga agctgagctg gaatggcaag aacctcacaa ccaaccagtt cctgatgcag
     1381 gaagtggcca agcagctggg tttgaagcga atgaattttc ccatattcgc tgcactgctt
     1441 ggtaaccaca ttctgccaga tgaagacttg gctgcttttc actggagcct tttgggacca
     1501 gaacatcctc ttgcatcact taaggtccga gctcatcagc tggttcttcc tccttgtgac
     1561 gtcgtcatca aggctgtttc tgagtatgtt agttccatca aagatccctc aaacctggac
     1621 gtggttggca aggatgtttt caaacaatct cagtctagga cagaagacaa aatagaacga
     1681 ttcaagaaag cagttgagta ctattcagtc acaaccaaac tctcttcact gccagtgggt
     1741 ccttcctttc taggctttcg aaataatcgg cttggaaatc ctccccttcc acggaatcaa
     1801 atgggcccta tttctcctgg aaagccaatg ttttctcgcc agatgcccca gaaaatgaaa
     1861 tatccaccac catttccaat gggacccaac tcatctcttc tcttctccca tagtgtggga
     1921 gaatcccatg ctttctctga ggatgccatg ctacaggaca gttcctttgc caattgggct
     1981 gtttcttatg actctaatac atcccagttt cctaactgcc tgacttccaa aacttcacct
     2041 cctttgggac cagattcttc ccattcctct tcctctgatg gtgacgaggc aaatggagct
     2101 ggttctgaac aagtcacaga agcagttcaa caacagcctg gatgggaaga tcccagtggt
     2161 gacagaggag cttgggtaca gcctgttgat gctggagctt cagaaacaaa cgcaactgaa
     2221 agtgaacctc acatcccatc tctgttatct atgtctacaa ggaaccacat ggatatcacc
     2281 attccaccct tacctccagt agctccagaa gtcttgaggg ttgctgagca cagacaccga
     2341 aggggtctta tgtatccgta tatttaccat gtccttacta agggtgagat taaaatccct
     2401 gtatgtatcg aggatgaatg taacatggag ctgcctccag ctgctctcct gttccgctca
     2461 gctcgccagt atgtatatgg agtccttttt agcctagcag agacacagcg gaaaatggag
     2521 cgcctggcca tacggcgacg gttacctata gaagttcctt ctgtgatcct taaagagtgg
     2581 tctgcatata aagggaaatc acctcagacc cccgagctgg tatctgcact cacttttcgg
     2641 gaatggactt gcccaaacct caagaagctc tggttaggca aagcagttga ggacaagaac
     2701 aggaggatga gggctttcct ggcctgtatg aagtcagaca ctcccagtat gctcaatcca
     2761 gctaatgttc ccacccacct gctactcatg tgctgtgtac tccgatacat ggttcagtgg
     2821 cctggtggcc gaatcctgca tcgccatgaa cttgacacct tccttgcaca ggcagtgtct
     2881 actcaacttt atgaaccaga tcagcttcaa gaactcaaga ttgagaaact ggatgctcga
     2941 gggatccagc ttgctgccct gttcatgagt ggggtcgata cagctctgtt tgctaatgat
     3001 gcatgtggcc agccagtccc ttgggagcac tgctgcccct ggatttactt tgatggcaag
     3061 ctgttccaga gcaaactcat taaagcaggc cgagaacgag tatcactggt tgaactctgt
     3121 gatggccagg ctgacctggc aagcaaagtg gaaaagatga ggcagagcat ccttgaaggc
     3181 gtcaacatga atcatccacc accttctgct ctgcttcctt cacctacgtt cgtgcctccc
     3241 atggtgccat ctctctaccc tgtttctctt tattccagag ccatgggctc atttccacct
     3301 ccccctcaag caaggagtcg aggctttgca ggtctccatc caatcccacc ccaaggagga
     3361 aaactggaaa ttgctggcat ggtggtgggc cagtgggctg gcagcagatc ttcgagaagc
     3421 cgaggatcct ttggcatgca agtggtttct gtcggtgggc caggaaaggg acatggaaaa
     3481 gaacaggctg ggagaggatc caaaggtcac aaaaaaggaa ataaacaagg ctcttcagat
     3541 ggaatttcca aatctgtgga gcttcatccg agtcgggccc gctcgcaggt aaatggaaac
     3601 aatggcacat tgattgtgga ggagaagagt gatccgcttc cggctccacc ccagtgcgcc
     3661 ttatccagag acagtactgt gtgtaacagt agcgatgacc actgcctccc cgtgaagaat
     3721 ggagagaaga accatgtgca agagcaagag ctagaagctg tggcccaaca gaaagaggag
     3781 tgataagctg aagatggctg cacttgtagg gggaggagaa aacaatactt ttctgattct
     3841 aggcccaagt tagaggagga tagaaatctt taccctacat caatcctgga ctttcaggaa
     3901 atatttatgt attgtatcca ccttttcatc cctatcttct ctggctccag acttagaacc
     3961 tgggaggttt ctggttaatg atgactaagc tccagttctc aaatatacag caccaatgtt
     4021 ttctttgtac ctactggaaa tctagtgagg cagtaactgt cagaaggcag gtatcatcac
     4081 acaagtccta gggaaaagtt ctggctttgg ttttctgagt atttaatatg ataactcatt
     4141 tataaactta tatgagaaat atggggttga aagataagct gcctatgggt tcctggtttt
     4201 tgtctttgag gtaatggaac cttgatacct aatcaatatc ctccttactc tctcccctaa
     4261 ctcacctacc ccaggacttt atatatcacc tctagctctg gcctgacaat cagataggta
     4321 gatgttttca gggaagtaga cagcgttggt ttgggttatt ttatttttta ttttatacac
     4381 ttttaaaaaa aaactacaat ggcctttgta ctgggagatt caagtgagtc cgaaaagtac
     4441 tgggcagatt tttcctgcct cccaaccagt gcattgttta taaaatagaa gatatggtgc
     4501 agttcaccca ctctctgctg cccacacttt aaaagggtgg gaatcaatgt tatgaaactg
     4561 agtacaaaag ggactcaaag actttatgtg tgtgtacatg tgtataggtg tgtgtgtggg
     4621 tgtatatatg aacatgtgta tctatatgca tacacatacc ctttatataa gagacagatc
     4681 tatttatcta tacatatttt atatatataa atgtgtgtat acagatatat atacacatac
     4741 atacatacat ggtaaagttc cagaagattt actgaatttc ccagaaatgc ttccactgct
     4801 atggaatggt gggtttcaaa agaccatact ttaaatccga aatccttact aagtcacagc
     4861 ctatcacaat tatgagaaga tgggctactc taaatcagac acaaagtact ttccagagct
     4921 tgcctgttca gaacaacaaa tacttcactt tgaacagagc cctcacatcc catatggtga
     4981 aaacaggaag ttgagatggg attgggaaga gttgcacatt ttttacgaag gtctggagat
     5041 agaaaaggga taggaggtaa tttccatttg aaaaggcttt cagccaattt ggaagaaatg
     5101 ccttttggaa ctccaggatc aaattggctt ccggcaagaa ctaactgaca tgaatccaag
     5161 gagggaaaac tagcattgga atgatggggt ggggagatgt gaggaacttt gagaatttga
     5221 ttttacatgc ttagattgtt tcgtttattc attgacattt tgactacagg atcttttcat
     5281 ttgctttgca aggaagatgt cagagaactt ggccagggat ttgagaggca ttctataaaa
     5341 gagcctcagt ccctgtgggg ccaagatctg cccaggataa aaaggctctt cctccttgct
     5401 ggagataatc ttacaaaaac cttgatttcc agtttccctc attttgggca accaaaacac
     5461 aagggatgga aacaaggctc ataaccaact ataacttata aactcataac caactagtat
     5521 cttcattcag gaattgaggc ttctggccac acacatctcc ttttggactt tgatattctt
     5581 gcccaagaaa tatcatttct ataagaatat aactgactag actcctagca gggtcctcta
     5641 tttttgggaa aaaacatgca acttaactta caatagatcc ttcgtgattt ttttccagac
     5701 aaccagaagg ctatgtttgc tgtctgccca tttgtctcaa gaaactaaaa cgtcttgggc
     5761 tgtttaatcc aagtccaacc cagtttaaga gaactcacaa ttttcagggt acaggaaccc
     5821 tggtatgcct tgtcccttgc ccagactttt cttacataag cctaataaag gtggcaagag
     5881 tatgtcccat gccatatata agaagaataa gaagaaaaag tatacaacac ttcctctttg
     5941 aaacgagctc ccctgatttg gttccctttc tgatcttgga cctactcatc cttttgcaat
     6001 accttgaagg ttaggacttt tatatccagt aagggaaaga attcatagaa aatatagatg
     6061 gcttagaatc accttctgag ctacagaagg gttcatcctt tgaagctcta aaagtaacca
     6121 gaatcactga gtgaatggtt agatatatgg acaaatattg aataggaagt gcttggagtt
     6181 aaatgttaga gtatcttcag ttgctgtttc tgtgcattgt gagtctatct gatgcagtca
     6241 gatgacagta ttgttaactc ttatatcctt ctcacaacag gaagatttat tttgtagcca
     6301 ttcactgtga gaggtaaaaa tgctgctttg acagaaatga ttccagtttg ccaaaagact
     6361 tgcttttccc ccttccagag acctctgctt ctccctagcc tggcccagga tgaaacaagt
     6421 ggcttacgtc caactttcag ttttgatttg attgagcatt tggggtttgg gaggttacaa
     6481 gaaaaactat aaagacttct gggctgggga tttagctcag tggtagagca cttgcctagc
     6541 aagcacaagg ccctgggttc ggtccccagc tccgaaaaaa agaaaaaaga aaaaaaaaga
     6601 cttctgttcc tatattcagt gtacctacca aaacatacaa tttaaaagcc agggaagcta
     6661 aagttcatta ctgagaaatg gactttttct aattggaaga caaattgggg gcctttgctg
     6721 tacccctttg aggttccatt tcttattctc actggctgtt cttggacaaa gtcatcttgg
     6781 aatccccaga aatgacggct ttaccttgta gggacacagc aaaaataaaa ccagaaccct
     6841 aaactggttt tgtgcagcca ctgaatgcta aagtcttgca gttcttctgc ctttgtgtct
     6901 ttgggtcagc ctgtgacgcc taccttttta catgactggt cctgacagac ttctatttgt
     6961 tttaatcatt ctcactgtac ataggtaggt cttcaggcat tttgcagccc cccaaaatgg
     7021 cacattcttt gactagggac atttgatttt tgtctccatc tggattttct gacattgttg
     7081 gccaaagtac cctaatactt tcatcactaa ggtaaaaaaa aaaaaaaaaa
//
