LOCUS       XM_039103338            5711 bp    mRNA    linear   ROD 11-JUN-2023
DEFINITION  PREDICTED: Rattus norvegicus EYA transcriptional coactivator and
            phosphatase 4 (Eya4), transcript variant X14, mRNA.
ACCESSION   XM_039103338
VERSION     XM_039103338.1
DBLINK      BioProject: PRJNA677964
KEYWORDS    RefSeq.
SOURCE      Rattus norvegicus (Norway rat)
  ORGANISM  Rattus norvegicus
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha;
            Muroidea; Muridae; Murinae; Rattus.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_051336.1) annotated using gene prediction method: Gnomon,
            supported by EST evidence.
            Also see:
                Documentation of NCBI's Annotation Process
            
            [WARNING] On Feb 22, 2024 this sequence was replaced by
            XM_039103338.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Updated annotation
            Annotation Name             :: GCF_015227675.2-RS_2023_06
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.1
            Annotation Method           :: Best-placed RefSeq; Gnomon;
                                           cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 06/06/2023
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5711
                     /organism="Rattus norvegicus"
                     /mol_type="mRNA"
                     /strain="BN/NHsdMcwi"
                     /db_xref="taxon:10116"
                     /chromosome="1"
                     /sex="male"
                     /tissue_type="kidney"
                     /geo_loc_name="USA: Wisconsin, Milwaukee, Medical College
                     of Wisconsin"
                     /collection_date="2019-03-08"
                     /collected_by="Rebecca Schilling"
     gene            1..5711
                     /gene="Eya4"
                     /note="EYA transcriptional coactivator and phosphatase 4;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 3 ESTs, 4 long SRA reads, 8 Proteins, and
                     100% coverage of the annotated genomic feature by RNAseq
                     alignments, including 11 samples with support for all
                     annotated introns"
                     /db_xref="GeneID:292172"
                     /db_xref="RGD:1307099"
     CDS             685..2442
                     /gene="Eya4"
                     /codon_start=1
                     /product="eyes absent homolog 4 isoform X12"
                     /protein_id="XP_038959266.1"
                     /db_xref="GeneID:292172"
                     /db_xref="RGD:1307099"
                     /translation="MEDTQDLNEQSVKKTCPESDVSEPQNSRSMEMQDLASPHALVGG
                     SDTPGSSKLDKSGLSSTSVTTNGTGVITSSGYSPRSAHQYSPQLYPSKPYPHILSTPA
                     AQTMSAYAGQTQYSGMQQPAVYTAYSQTGQPYSLPAYDLGVMLPAIKTESGLPQTQSP
                     LQSGCLSYSPGFSTPQPGQTPYSYQMPGSSFAPSSTIYANNSVSNSTNFSGSQQDYPS
                     YTAFGQNQYAQYYSASTYGAYMTSNNTADGTSSSTSTYQLQESLQGLTSQPGEFDTVQ
                     SPSTPIKDLDDRTCRSSGSKSRGRGRKNNPSPPPDSDLERVFVWDLDETIIVFHSLLT
                     GSYAQKYGKDPPMAVTLGLRMEEMIFNLADTHLFFNDLEECDQVHIDDVSSDDNGQDL
                     STYSFATDGFHATASSANLCLPTGVRGGVDWMRKLAFRYRRVKELYNTYKNNVGGLLG
                     PAKRDAWLQLRAEIEGLTDSWLTNALKSLSIISTRSNCVNVLVTTTQLIPALAKVLLY
                     SLGGAFPIENIYSATKIGKESCFERIMQRFGRKVVYVVIGDGVEEEQAAKKHNMPFWR
                     ISSHSDLLALHQALELEYL"
ORIGIN      
        1 aacaggcagt gtcccgagat tgaataaaaa gagagggttt ctgcgcctgc caagatcccc
       61 cgctcttccg gcggcccgct gcgaggcccc cagcggccac cctagcccca gggcgcaggc
      121 gacgacgtcc ccccacctcc tatacccccc cttctcccgc ctctaggctc cggctccgag
      181 cgcaagggag aggctgcccg cggcgcggcg cacgctccgg cggcttctgg tttgagcgca
      241 aacctttacc cgggtcggcg ccctagagag gggacggcgt ggcggggacc tgcggagtga
      301 cgcccggcta cccggcgcgc gcgctttctc ttttcttctg ctttcccccg gccgctcggc
      361 tgccgggacc ctggctcggc tcctttcgtc ctccccctcg cagccggctc ccccaccccg
      421 ccctgtttct cccccacttg tgtaagcatt tgttgggggt ggccgaaagg gatgtcctgt
      481 tttcaccaga gacacagcgc gaagggaaaa cttagacact ggaaggaaag cgagtaaata
      541 cacagatcgg acccgcagat cactggctgg gacagacaat tgaacttcgg gagcccgagg
      601 cggtccgggc cgccagagat agtcaatttt gaatcccagg aagctgcttc tgcgtgggag
      661 tggcagaaga agttagagaa ccacatggaa gatacccagg acctaaatga gcagtccgta
      721 aagaaaacgt gcccagaatc agatgtttca gaacctcaga attccaggtc tatggaaatg
      781 caagacctag caagtcccca tgccttggtt ggaggcagtg acacacctgg gagctccaag
      841 ctggataaat ccggtctcag cagcacttcg gtcacaacaa atgggacagg agtaataacc
      901 agcagtggct acagccccag atcggcacac cagtactccc cacagctgta cccctccaag
      961 ccctatccac acattctttc tacaccagca gctcaaacaa tgtcggccta cgcaggccag
     1021 actcagtact ctgggatgca gcagccagcg gtctacacag cctactcgca gacagggcag
     1081 ccctacagcc tgcccgccta cgatcttggt gtgatgttgc cagccatcaa gacggaaagt
     1141 gggcttcccc aaactcagtc ccctttacag agtggctgcc tcagctacag ccctgggttt
     1201 tctaccccac agccaggcca gacaccttac tcttaccaaa tgccaggctc cagttttgca
     1261 ccatcatcca ctatttatgc aaataattcc gtctctaatt caacaaattt cagcggctca
     1321 caacaggatt acccatcgta cacagccttt ggccaaaacc agtatgctca gtattactca
     1381 gcatcaacct atggggcata catgacttca aacaacacag ccgatggcac atcgtcatcc
     1441 acctcgactt accagctaca ggaatctctc caaggactga ctagccaacc aggagagttt
     1501 gatacagtgc agagcccatc cacaccaatc aaagatcttg atgacagaac atgtagaagt
     1561 tctgggtcaa agtctcgagg aagaggccgg aaaaataatc cctccccacc tccggacagt
     1621 gacctggagc gtgtgtttgt ctgggacttg gatgaaacca tcatcgtctt ccactctctc
     1681 ctcacgggct cttacgcaca gaagtacggc aaggatcccc cgatggctgt aacccttggg
     1741 ctccgaatgg aagaaatgat ctttaatctt gcggatacac atttgttttt taacgactta
     1801 gaggagtgtg atcaagttca tatagatgat gtttcctccg atgacaatgg tcaggactta
     1861 agtacctaca gttttgcaac tgatggcttc catgcaactg caagtagtgc gaacctttgt
     1921 ttgccaacag gtgtgagagg aggggtggac tggatgagga agctggcttt tcgttacaga
     1981 agagtaaagg aattatataa cacctacaag aacaatgtcg gaggtctcct tggccctgcc
     2041 aagagggatg catggctgca gttaagggca gagatcgaag gcctaacaga ttcctggcta
     2101 acaaatgcac ttaagtcttt atcaattatt agtactagga gtaactgtgt aaatgtcttg
     2161 gtaacgacaa cccagctgat tcctgctctt gcaaaagtcc tgctttacag cctaggaggt
     2221 gctttcccca ttgagaatat ttacagcgca actaaaatag gaaaagaaag ttgctttgaa
     2281 cggataatgc aaaggtttgg cagaaaagta gtgtatgtgg taattgggga tggtgtagaa
     2341 gaagagcagg cagcgaaaaa gcacaacatg cccttttgga ggatatcaag ccactcggac
     2401 ctcttggctc tacatcaagc actggaatta gagtatttgt aactgtattc tctagctgag
     2461 gatccatttt tttttatatt tcaagtacac tgaattttta tgtgtgatcc aatgccgctg
     2521 gcttcttcta cacatataaa tggtcttaac ggatgaaatc atacttggaa ggaaaactcc
     2581 agagtgaaga attcgggttg ctgaatggaa ttaaacttta gtgctacaga aaggaagctc
     2641 tatggtctta ttatctttac aatactttca tggtttaaaa aaaaatcagt ggcagttgct
     2701 gacacgtatc aagtgagtcc taagagggat taacagcttt agtaaagaac tggaaccctc
     2761 cgagccacag cacctgctct gcctctgaca aggtggttga aaacattcct caaaatggga
     2821 gctcttctca accctgaggt ttgaatctga cttatagcct acctagccca gaaaatctga
     2881 atcggaatgc actcagactg tataacgaca gtcctatcta gacatgtaat ttgtgtaaat
     2941 tattgatgga aataatttac tgtgacttta ttagcagctg actctgaaag tggatgcaat
     3001 ttttctttta tttgttgggg tgggaaaggg ctggggaaat gggaatataa tattgtctct
     3061 tttttaaggt tggcaaagag aatgttcata ctgatgtgtt gtgccttaaa gacaagacag
     3121 catttgtgtg ttacaatgta actttggtta caactctcta tagataatca aagacaaaaa
     3181 aaactttaaa aaaatcaagc aaacaaacaa atacctttgt gataattctt cacatgacca
     3241 aatttaaaat tcaacctatc agtttaatat ggagtcattg acaaactgag tatttgttaa
     3301 aatgagaaac cagtaacaca gaactattgg gttctaaatg atttcagtaa tcagtatatg
     3361 tcagttatct gaacacccaa tcacaagcag gtttgggaga ctataggttc tttatttaga
     3421 gagtgaaata tatagatatt aaagtttcaa gtatcctttc ttacagtttt ctggatggaa
     3481 attaagagct ctattcatgt caacataccc aattttagtt taagactgga tatgtgccag
     3541 tttctaagag gacaatatca tggtgcaaat ttagcaaata ttaccaaagt catttttaga
     3601 acatgctatg gatgtagctt aaaacacaca ttgagtaggc acagcagagt gcatttgtct
     3661 tccatgctgt tacaaaagca agtgtcatca atggtagaag gcaggtatac cagatagctc
     3721 tcaaggaaac aactctgaat ctgtgaattt tttatataat attattataa gtaaattatc
     3781 gaacaagcta tatcttgaca tcaccaccag atcacaacag taaaagggta ttcactctcc
     3841 ttggaacaca tcagtccagg gtctccctat tacagacagg aatacattgg tttcttcctg
     3901 catggttgct gaacaatgcc tgcattcatt gctgggagag cctggcctca ttgtgtgtct
     3961 gcctgtcctt ttgccttgtt ggtgtacaac ccatattggt aacatgatac agattctcct
     4021 ctcatttgtt atgatatggt ttgccttgtg gaaatttaag acttcaagaa gggaaatatt
     4081 ctaatggtgt aagcacctga atctctctgc atactgaatg gcataagatg gatcctagag
     4141 tctagctctt agtcaaagtc cttcatctga ggctgcttca tgagaggtcg tcatctgaga
     4201 ctccggcaac ttaaataagg ccaatgcttt gctcaaacat cacagaggat actctggagg
     4261 gctgtaaatt tctttagaga atgatgtggt cctgtttaca aagacagata agatagctgc
     4321 ctatgattgg gacttcttat ctaaatcctt actttttcaa tgtgtctttt ggtttccctt
     4381 tccctgacgc tatggtggca aattatggtt ggaatatttt aatactaatg ctattaataa
     4441 taaattttac acttttgtcg gtcttcagct tgaaagtggt ttaaaggtca aagatgtgat
     4501 ttttttttgt tactgggact cgtttgtagt taatactatg actaaaacaa agttagtttg
     4561 tcacacagcc agtttctttc actgatagac ttgtgcccct gcatcaaaag ttataactct
     4621 tcttgaaatc tgatgaacaa ggcttctttc ttaaactgct ccacttgagg gacagagagg
     4681 cttgcccttt ccaaatgcat caagggctgg ctgttggcct cctccctact taaccatccc
     4741 cctctccctt ccctaccact ccaccttccc cactctcaca tatctgtccc ggggttgagg
     4801 ggggaggcag ccagtataat acctacaagt gaggttgatg gaaaagcgac tgtccagcac
     4861 aacaatggtg atagccagaa agccatagcc cagcctggtc atgtgacttt gagcagactc
     4921 aaactacaac tcttcccctc ttagggcagg aaaattccct ttctttctag aaacacatca
     4981 gccaaacaac aattaaataa ataaataaat aaataaataa ataaataaat aaataataac
     5041 cagccctgtg ggcagttcct acattctatt tttatgtgga atatcgtgcc ttattataaa
     5101 tgaatttgaa aactgttctc caactcagaa gggttttggg ctattacata ttcaagcttg
     5161 gtatgatatt agaaaaaata actgccttat attgcacctt aaaaagatca agaccctatc
     5221 acttgagtaa gaaaataggg gtggcctaac tacaacatta tagcatacgt ctaagatgat
     5281 aaaaaccctg aagaaatgtg caaacacaat tcagaggtaa aaataagatt ttaagattat
     5341 atggtctgtc cacagaaata gctactaact gtctgatgag ctaagatcaa agtagcttca
     5401 acagcatgcc ctactgtgaa gtttttttgt aaaaacctac ttttttgtga cacgcctgca
     5461 ttctcagcga atatggcatt tagtatttct tttcaacaca aacctaatct tcatgagcca
     5521 aagttgcatt ttgacttcca actagggcgg cgttagaggg aatcacacag tcaaagtcaa
     5581 gggtttctgt tatgtattag taaagtatag attattgggg cctacataat ttaaagaaat
     5641 gtaaattaat attaaaagct tgtaaaaatg tacatcttta ctatttctca ataaatacct
     5701 ttgcaactgt a
//
